Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Reverse (-)

1685456 .. 1686592

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCGTTTTGCCGCCTCATCCGCCGCGCATTTTCCACCGCCACCCAGCCCAAACCCAAGAGCATCAGAGCCATCTCCGAAGACCTCTACAGAGAACGCAACCTCAAACGCCTCGTCCACAAGTTCAAAGAGTCCTCAGAGATCTACCGCTTCCGAACCAAAAGCCCCATTTACGAAGAAACTGTCCGCCGCCTCGCCACCGCCAAGCGCTTCAATGCCATCGAAGAAATGCTGGAGCACCAGAAGAAGTACCCGGATTTCGCCGACGAGGGTTTCGCCGTTAGAATCCTTTCCCTTTATGGAAAGGCCGGGATGTTCGATAATGCCCAGAAGGTGTTCGACGAAATGCCTGACAGAAACTGCGTGCGCACCGTGCTGTCCTTCAACGCGCTTATGGGCGCGTGCGTGAACTCCAAGAGGTTTGATATGGCTGAGAAGATATTTAAGGAGGTGCCGGAGAAGTTGTCTGTTGAGCCGGATTTGGTGTCTTACAATATTTTGATCAAGGCGTTTTGTAAGATGGGTTCATTTGATTCCGCGGTTTTGGTGCTTGAAAAGATGGAGAAGAAGGGTATGAAGCCGGATGTGATCACGTTTAACACGATTTTGGATTGCTTGTATGGGAATCAGCGGTTTTCAGATGCTAAGAAGATATGGGGTGTAATGGTGGAGAAGAATGTTGTTCCGGATATTAGGAGCTATAATGCCAAGTTGATGGGATTGGCTTTGGAGAAGAGGAGTAAAGAAGGGGCTGAATTGGTTAAGGAGTTGAGGAGTAGTGGAGTGGAACCTGATGTGTTTAGCTTCAATGCCTTGATTAAGGGATTTGTGGGTGAGGGGAACTTGGAGGAAGCTAAGCGGTGGTATGGTGAACTAGTGAAGAGTGGTTGTGCTCCGGATAAATGGACTTTCGAGATGCTTGTTCCCTTTTCTTGTGAGAAGGGGGATGTGGAGTATGGTTTTGAGCTCTGCAAGGATATTTTCCAAAGGCGCCGTCTTGCTAGTGCGGCAATGTTGCAGCCTGTGGTGGATGGTCTGGTTAAGGCCTCTATGATTGAGCAGGCAAAGGAACTTGTCAAACTTGGGAACACTAATTCCTACAAACGTTTTAACTTGAAGTTGCCTTCAGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

379

Amino Acids

43.28

Weight (kDa)

9.1

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	106 - 195	8.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	111 - 173	9.8e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	124 - 173	6.5e-11	PPR repeat family
PPR_3	PF13812	153 - 205	3.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	157 - 188	1.1e-10	PPR repeat
PPR_2	PF13041	159 - 206	1.4e-15	PPR repeat family
PPR	PF01535	162 - 191	7.9e-08	PPR repeat
PPR_3	PF13812	183 - 236	9.7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	194 - 241	5.5e-09	PPR repeat family
PPR_2	PF13041	229 - 277	3.5e-07	PPR repeat family
PPR_3	PF13812	253 - 307	2.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	264 - 308	5.8e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	368
AccB1I	GGYRCC	2 cut(s)	451, 990
AccII	CGCG	4 cut(s)	27, 389, 401, 539
AccIII	TCCGGA	2 cut(s)	685, 895
AclI	AACGTT	1 cut(s)	1105
AcuI	CTGAAG	1 cut(s)	1110
AcyI	GRCGYC	1 cut(s)	991
AfaI	GTAC	1 cut(s)	251
AfeI	AGCGCT	1 cut(s)	209
AgsI	TTSAA	6 cut(s)	127, 214, 385, 554, 808, 1117
AhlI	ACTAGT	1 cut(s)	874
AloI	GAACNNNNNNTCC	2 cut(s)	1079, 1111
AluBI	AGCT	4 cut(s)	699, 804, 854, 967
AluI	AGCT	4 cut(s)	699, 804, 854, 967
Alw21I	GWGCWC	3 cut(s)	240, 895, 969
AlwNI	CAGNNNCTG	1 cut(s)	360
Aor13HI	TCCGGA	2 cut(s)	685, 895
Aor51HI	AGCGCT	1 cut(s)	209
AoxI	GGCC	2 cut(s)	306, 1044
ApeKI	GCWGC	1 cut(s)	1018
ArsI	GACNNNNNNTTYG	8 cut(s)	99, 131, 168, 200, 257, 289, 979, 1011
Asp700I	GAANNNNTTC	2 cut(s)	289, 335
AspLEI	GCGC	6 cut(s)	29, 210, 369, 391, 401, 993
AsuC2I	CCSGG	2 cut(s)	254, 310
AsuHPI	GGTGA	2 cut(s)	845, 881
BanI	GGYRCC	2 cut(s)	451, 990
BanII	GRGCYC	1 cut(s)	969
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	3 cut(s)	240, 895, 969
BbvI	GCAGC	1 cut(s)	1030
BccI	CCATC	6 cut(s)	80, 227, 514, 553, 709, 1025
BceAI	ACGGC	2 cut(s)	263, 978
BclI	TGATCA	2 cut(s)	501, 588
BcnI	CCSGG	2 cut(s)	254, 310
BcuI	ACTAGT	1 cut(s)	874
BfaI	CTAG	2 cut(s)	875, 1002
BfmI	CTRYAG	1 cut(s)	88
BfoI	RGCGCY	2 cut(s)	211, 994
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	5 cut(s)	13, 25, 190, 1008, 1019
BlpI	GCTNAGC	1 cut(s)	855
BlsI	GCNGC	5 cut(s)	14, 26, 191, 1009, 1020
Bme1390I	CCNGG	2 cut(s)	254, 310
BmiI	GGNNCC	3 cut(s)	453, 789, 992
BmrFI	CCNGG	2 cut(s)	254, 310
BmsI	GCATC	3 cut(s)	72, 631, 906
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	254
Bpu1102I	GCTNAGC	1 cut(s)	855
BpuMI	CCSGG	2 cut(s)	254, 310
BsaHI	GRCGYC	1 cut(s)	991
BsaJI	CCNNGG	1 cut(s)	537
BsaWI	WCCGGW	2 cut(s)	685, 895
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bse3DI	GCAATG	1 cut(s)	1017
BseAI	TCCGGA	2 cut(s)	685, 895
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	5 cut(s)	18, 318, 589, 952, 1036
BseMI	GCAATG	1 cut(s)	1017
BseMII	CTCAG	2 cut(s)	150, 423
BseRI	GAGGAG	2 cut(s)	751, 787
BseXI	GCAGC	1 cut(s)	1030
BseYI	CCCAGC	1 cut(s)	45
Bsh1236I	CGCG	4 cut(s)	27, 389, 401, 539
BshFI	GGCC	2 cut(s)	308, 1046
BshNI	GGYRCC	2 cut(s)	451, 990
BsiHKAI	GWGCWC	3 cut(s)	240, 895, 969
BsiSI	CCGG	7 cut(s)	254, 309, 455, 476, 581, 686, 896
BsnI	GGCC	2 cut(s)	308, 1046
Bsp1286I	GDGCHC	3 cut(s)	240, 895, 969
Bsp13I	TCCGGA	2 cut(s)	685, 895
Bsp143I	GATC	3 cut(s)	141, 501, 588
Bsp1720I	GCTNAGC	1 cut(s)	855
BspANI	GGCC	2 cut(s)	308, 1046
BspCNI	CTCAG	2 cut(s)	149, 424
BspEI	TCCGGA	2 cut(s)	685, 895
BspFNI	CGCG	4 cut(s)	27, 389, 401, 539
BspLI	GGNNCC	3 cut(s)	453, 789, 992
BspT107I	GGYRCC	2 cut(s)	451, 990
BsrDI	GCAATG	1 cut(s)	1017
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	3 cut(s)	141, 501, 588
BssNI	GRCGYC	1 cut(s)	991
Bst4CI	ACNGT	2 cut(s)	184, 373
Bst6I	CTCTTC	2 cut(s)	728, 875
BstACI	GRCGYC	1 cut(s)	991
BstC8I	GCNNGC	3 cut(s)	365, 403, 1062
BstDEI	CTNAG	4 cut(s)	136, 432, 645, 855
BstDSI	CCRYGG	1 cut(s)	537
BstF5I	GGATG	5 cut(s)	18, 318, 589, 952, 1036
BstFNI	CGCG	4 cut(s)	27, 389, 401, 539
BstH2I	RGCGCY	2 cut(s)	211, 994
BstHHI	GCGC	6 cut(s)	29, 210, 369, 391, 401, 993
BstKTI	GATC	3 cut(s)	144, 504, 591
BstMBI	GATC	3 cut(s)	141, 501, 588
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 373, 1007
BstSCI	CCNGG	2 cut(s)	252, 308
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	4 cut(s)	27, 389, 401, 539
BstV1I	GCAGC	1 cut(s)	1030
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	141
BstXI	CCANNNNNNTGG	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	308, 1046
BtgI	CCRYGG	1 cut(s)	537
BtsCI	GGATG	5 cut(s)	18, 318, 589, 952, 1036
Cac8I	GCNNGC	3 cut(s)	365, 403, 1062
CaiI	CAGNNNCTG	1 cut(s)	360
CfoI	GCGC	6 cut(s)	29, 210, 369, 391, 401, 993
Cfr42I	CCGCGG	1 cut(s)	540
Csp6I	GTAC	1 cut(s)	250
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	4 cut(s)	136, 432, 645, 855
DinI	GGCGCC	1 cut(s)	992
DpnI	GATC	3 cut(s)	143, 503, 590
DpnII	GATC	3 cut(s)	141, 501, 588
Eam1104I	CTCTTC	2 cut(s)	728, 875
EarI	CTCTTC	2 cut(s)	728, 875
EciI	GGCGGA	2 cut(s)	11, 176
Ecl136II	GAGCTC	1 cut(s)	967
Eco147I	AGGCCT	1 cut(s)	1046
Eco24I	GRGCYC	1 cut(s)	969
Eco47III	AGCGCT	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	967
Eco57I	CTGAAG	1 cut(s)	1110
EcoICRI	GAGCTC	1 cut(s)	967
EcoT38I	GRGCYC	1 cut(s)	969
EgeI	GGCGCC	1 cut(s)	992
EheI	GGCGCC	1 cut(s)	992
FbaI	TGATCA	2 cut(s)	501, 588
Fnu4HI	GCNGC	5 cut(s)	13, 25, 190, 1008, 1019
FokI	GGATG	5 cut(s)	5, 325, 596, 959, 1043
FriOI	GRGCYC	1 cut(s)	969
Fsp4HI	GCNGC	5 cut(s)	13, 25, 190, 1008, 1019
FspAI	RTGCGCAY	1 cut(s)	368
FspBI	CTAG	2 cut(s)	875, 1002
FspI	TGCGCA	1 cut(s)	368
GlaI	GCGC	6 cut(s)	28, 209, 368, 390, 400, 992
GluI	GCNGC	5 cut(s)	13, 25, 190, 1008, 1019
GsaI	CCCAGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	2 cut(s)	211, 994
HaeIII	GGCC	2 cut(s)	308, 1046
HapII	CCGG	7 cut(s)	254, 309, 455, 476, 581, 686, 896
HhaI	GCGC	6 cut(s)	29, 210, 369, 391, 401, 993
Hin1I	GRCGYC	1 cut(s)	991
Hin6I	GCGC	6 cut(s)	27, 208, 367, 389, 399, 991
HinP1I	GCGC	6 cut(s)	27, 208, 367, 389, 399, 991
HinfI	GANTC	4 cut(s)	131, 285, 533, 625
HpaII	CCGG	7 cut(s)	254, 309, 455, 476, 581, 686, 896
HphI	GGTGA	2 cut(s)	845, 881
Hpy166II	GTNNAC	3 cut(s)	118, 409, 872
Hpy188I	TCNGA	6 cut(s)	68, 79, 139, 155, 640, 1129
Hpy188III	TCNNGA	3 cut(s)	686, 896, 913
Hpy8I	GTNNAC	3 cut(s)	118, 409, 872
Hpy99I	CGWCG	2 cut(s)	269, 344
HpyAV	CCTTC	6 cut(s)	325, 391, 562, 740, 934, 1134
HpyCH4III	ACNGT	2 cut(s)	184, 373
HpyCH4IV	ACGT	2 cut(s)	593, 1105
HpyCH4V	TGCA	2 cut(s)	972, 1018
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 373, 1007
HpyF3I	CTNAG	4 cut(s)	136, 432, 645, 855
HpySE526I	ACGT	2 cut(s)	593, 1105
Hsp92I	GRCGYC	1 cut(s)	991
HspAI	GCGC	6 cut(s)	27, 208, 367, 389, 399, 991
KasI	GGCGCC	1 cut(s)	990
Kpn2I	TCCGGA	2 cut(s)	685, 895
Ksp22I	TGATCA	2 cut(s)	501, 588
KspI	CCGCGG	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	141, 501, 588
LmnI	GCTCC	3 cut(s)	235, 696, 898
Lsp1109I	GCAGC	1 cut(s)	1030
LweI	GCATC	3 cut(s)	72, 631, 906
MaeI	CTAG	2 cut(s)	875, 1002
MaeII	ACGT	2 cut(s)	593, 1105
MalI	GATC	3 cut(s)	143, 503, 590
MboI	GATC	3 cut(s)	141, 501, 588
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	3 cut(s)	240, 895, 969
MluCI	AATT	2 cut(s)	755, 1093
Mly113I	GGCGCC	1 cut(s)	991
MlyI	GAGTC	1 cut(s)	140
MroI	TCCGGA	2 cut(s)	685, 895
MroXI	GAANNNNTTC	2 cut(s)	289, 335
MseI	TTAA	6 cut(s)	444, 597, 762, 819, 1041, 1110
MspA1I	CMGCKG	2 cut(s)	539, 631
MspI	CCGG	7 cut(s)	254, 309, 455, 476, 581, 686, 896
MspR9I	CCNGG	2 cut(s)	254, 310
MvnI	CGCG	4 cut(s)	27, 389, 401, 539
MwoI	GCNNNNNNNGC	3 cut(s)	21, 373, 1007
NarI	GGCGCC	1 cut(s)	991
NciI	CCSGG	2 cut(s)	254, 310
NdeII	GATC	3 cut(s)	141, 501, 588
NlaIV	GGNNCC	3 cut(s)	453, 789, 992
NsbI	TGCGCA	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	1046
PcsI	WCGNNNNNNNCGW	1 cut(s)	599
PdmI	GAANNNNTTC	2 cut(s)	289, 335
PfeI	GAWTC	3 cut(s)	285, 533, 625
PkrI	GCNGC	5 cut(s)	14, 26, 191, 1009, 1020
PleI	GAGTC	1 cut(s)	139
PluTI	GGCGCC	1 cut(s)	994
PpsI	GAGTC	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	969
Psp1406I	AACGTT	1 cut(s)	1105
PspFI	CCCAGC	1 cut(s)	45
PspN4I	GGNNCC	3 cut(s)	453, 789, 992
PsrI	GAACNNNNNNTAC	2 cut(s)	508, 540
PstNI	CAGNNNCTG	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	141
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	969
SacII	CCGCGG	1 cut(s)	540
SaqAI	TTAA	6 cut(s)	444, 597, 762, 819, 1041, 1110
SatI	GCNGC	5 cut(s)	13, 25, 190, 1008, 1019
Sau3AI	GATC	3 cut(s)	141, 501, 588
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	254, 310
SduI	GDGCHC	3 cut(s)	240, 895, 969
SfaNI	GCATC	3 cut(s)	72, 631, 906
SfcI	CTRYAG	1 cut(s)	88
SfoI	GGCGCC	1 cut(s)	992
Sfr303I	CCGCGG	1 cut(s)	540
SgrBI	CCGCGG	1 cut(s)	540
SpeI	ACTAGT	1 cut(s)	874
Sse9I	AATT	2 cut(s)	755, 1093
SseBI	AGGCCT	1 cut(s)	1046
SspDI	GGCGCC	1 cut(s)	990
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	2 cut(s)	875, 1002
SstI	GAGCTC	1 cut(s)	969
StuI	AGGCCT	1 cut(s)	1046
StyD4I	CCNGG	2 cut(s)	252, 308
TaaI	ACNGT	2 cut(s)	184, 373
TaiI	ACGT	2 cut(s)	596, 1108
TaqI	TCGA	4 cut(s)	222, 318, 339, 912
TasI	AATT	2 cut(s)	755, 1093
TauI	GCSGC	4 cut(s)	15, 27, 192, 1010
TfiI	GAWTC	3 cut(s)	285, 533, 625
Tru1I	TTAA	6 cut(s)	444, 597, 762, 819, 1041, 1110
Tru9I	TTAA	6 cut(s)	444, 597, 762, 819, 1041, 1110
TseI	GCWGC	1 cut(s)	1018
TspDTI	ATGAA	2 cut(s)	516, 590
XmnI	GAANNNNTTC	2 cut(s)	289, 335
XspI	CTAG	2 cut(s)	875, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.