Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Forward (+)

91753040 .. 91753539

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00070810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCCAGCATCAATTCCCTGGTTTGCTCGACTGCAATCGTATTGCAATTAATGTGGGGTCAAATGGTGGAGAAGAATGTTGCTCCTGATATTAGGAGCTACAATGCTAAGTTGCTGGGATTGGCTTTGGAGAAGAGGAGTGAAGAAGGGGCTCAATTAGTTGAAGAGTTGAGGAGTATTGGACTTCAATGCCTTGATAAGGGATTTGTGAATGAGGGGAACTTGGATGAAGCTACGCGGAGGTATGGTGAAATAGAGAAGAGTAGTTGTGCTCTGGATAAATGGACTTTCGAGACGCTTGTTCCCTTCGTTTGTGAGATGGGTGATGTGGAGTATGCTTTTGAGCTCTGCAAGGACATTTTCCAAATGCGCCGCCTTGTGGGTGCAGCATTGTTGCAGCCTGTGGTGGATGGACTGGTCAAGGCCTCCATGATTGAGGAGGCAAATGAACTAGTCAACCTTAGGAACACTAATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

159

Amino Acids

17.72

Weight (kDa)

4.65

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	238
AciI	CCGC	2 cut(s)	238, 373
AfiI	CCNNNNNNNGG	2 cut(s)	199, 379
AgsI	TTSAA	2 cut(s)	164, 188
AhlI	ACTAGT	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	18
AloI	GAACNNNNNNTCC	1 cut(s)	458
AluBI	AGCT	3 cut(s)	99, 233, 346
AluI	AGCT	3 cut(s)	99, 233, 346
Alw21I	GWGCWC	2 cut(s)	274, 348
Alw26I	GTCTC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	2 cut(s)	386, 397
AseI	ATTAAT	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	260, 335
AxyI	CCTNAGG	1 cut(s)	461
BanII	GRGCYC	2 cut(s)	154, 348
Bbv12I	GWGCWC	2 cut(s)	274, 348
BbvI	GCAGC	2 cut(s)	398, 409
BccI	CCATC	2 cut(s)	313, 404
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	287
BcuI	ACTAGT	1 cut(s)	451
BfaI	CTAG	1 cut(s)	452
BisI	GCNGC	3 cut(s)	373, 387, 398
BlsI	GCNGC	3 cut(s)	374, 388, 399
Bme1390I	CCNGG	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 379
Bse1I	ACTGG	1 cut(s)	420
Bse21I	CCTNAGG	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	232, 415
BseLI	CCNNNNNNNGG	2 cut(s)	199, 379
BseNI	ACTGG	1 cut(s)	420
BseRI	GAGGAG	3 cut(s)	151, 187, 452
BseXI	GCAGC	2 cut(s)	398, 409
BseYI	CCCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	405
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	425
BsiHKAI	GWGCWC	2 cut(s)	274, 348
BslI	CCNNNNNNNGG	2 cut(s)	199, 379
BsmAI	GTCTC	1 cut(s)	287
BsmBI	CGTCTC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	425
Bsp1286I	GDGCHC	3 cut(s)	154, 274, 348
BspACI	CCGC	2 cut(s)	238, 373
BspANI	GGCC	1 cut(s)	425
BspFNI	CGCG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	20
Bst6I	CTCTTC	3 cut(s)	128, 159, 254
BstDEI	CTNAG	2 cut(s)	108, 461
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	232, 415
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	398, 409
Bsu36I	CCTNAGG	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	2 cut(s)	232, 415
CfoI	GCGC	1 cut(s)	372
CseI	GACGC	1 cut(s)	304
CspCI	CAANNNNNGTGG	2 cut(s)	35, 70
CviAII	CATG	1 cut(s)	430
CviJI	RGCY	7 cut(s)	99, 125, 152, 233, 346, 400, 425
CviKI_1	RGCY	7 cut(s)	99, 125, 152, 233, 346, 400, 425
DdeI	CTNAG	2 cut(s)	108, 461
Eam1104I	CTCTTC	3 cut(s)	128, 159, 254
EarI	CTCTTC	3 cut(s)	128, 159, 254
Ecl136II	GAGCTC	1 cut(s)	346
Eco147I	AGGCCT	1 cut(s)	425
Eco24I	GRGCYC	2 cut(s)	154, 348
Eco53kI	GAGCTC	1 cut(s)	346
Eco81I	CCTNAGG	1 cut(s)	461
EcoICRI	GAGCTC	1 cut(s)	346
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	154, 348
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	1 cut(s)	433
FaiI	YATR	3 cut(s)	246, 336, 431
FatI	CATG	1 cut(s)	429
Fnu4HI	GCNGC	3 cut(s)	373, 387, 398
FokI	GGATG	2 cut(s)	239, 422
FriOI	GRGCYC	2 cut(s)	154, 348
Fsp4HI	GCNGC	3 cut(s)	373, 387, 398
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	3 cut(s)	373, 387, 398
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	425
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	433
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HphI	GGTGA	2 cut(s)	260, 335
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188III	TCNNGA	3 cut(s)	86, 275, 292
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	2 cut(s)	140, 316
HpyCH4V	TGCA	5 cut(s)	35, 46, 351, 386, 397
HpyF3I	CTNAG	2 cut(s)	108, 461
Hsp92II	CATG	1 cut(s)	433
HspAI	GCGC	1 cut(s)	370
LmnI	GCTCC	2 cut(s)	88, 96
LpnPI	CCDG	8 cut(s)	5, 19, 32, 99, 101, 260, 401, 414
Lsp1109I	GCAGC	2 cut(s)	398, 409
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	452
MboII	GAAGA	5 cut(s)	85, 145, 155, 176, 271
MhlI	GDGCHC	3 cut(s)	154, 274, 348
MluCI	AATT	4 cut(s)	13, 47, 155, 472
MnlI	CCTC	7 cut(s)	129, 165, 208, 234, 430, 433, 436
MseI	TTAA	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	238
NlaIII	CATG	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	374, 388, 399
PshBI	ATTAAT	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	3 cut(s)	373, 387, 398
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	3 cut(s)	154, 274, 348
SetI	ASST	5 cut(s)	101, 235, 245, 348, 462
SfaNI	GCATC	1 cut(s)	18
SpeI	ACTAGT	1 cut(s)	451
Sse9I	AATT	4 cut(s)	13, 47, 155, 472
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	2 cut(s)	238, 373
SspMI	CTAG	1 cut(s)	452
SstI	GAGCTC	1 cut(s)	348
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	18
TaqI	TCGA	2 cut(s)	29, 291
TasI	AATT	4 cut(s)	13, 47, 155, 472
TauI	GCSGC	1 cut(s)	375
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseI	GCWGC	2 cut(s)	386, 397
TspDTI	ATGAA	2 cut(s)	243, 462
VspI	ATTAAT	1 cut(s)	50
XagI	CCTNNNNNAGG	1 cut(s)	197
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.