Rh5DG041300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003805
Physical Location & Seq
Reverse (-)
3073469 .. 3074039
571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG041300.1

Sequence Viewer

Length: 321 bp
ATGTTTGAGAATGCCGGGAAGATGTACGACGAAATGCCTCAGAGAAACTGTGAGCGTACAGTGTTGTACTACAATGCCCTCCTAGGGGCCTGTGTGAACTCCAAGAAGTTTGATATGGTTGAGAAGATTTTCGGGGACGTGCCGGAGAAGTTGTCGATTGAGCCTGATTTGGTGTCATACAATACTATGATCAAGGCATTTTGCAAGATGGATTCGTTTGACTCTGCGGTTTCGGTGATTGAGATGATGGACAAGAAGGGTGTGAAGCCAGATGAGCTACAATGCCAAGTTGCTGGGGTTGGTTTTGGAGAAGAGGAGTGA

Protein Analysis

106

Amino Acids

11.97

Weight (kDa)

4.59

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 5 - 95 1.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 9 - 69 4.5e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 53 - 83 1.3e-08 PPR repeat
PPR_2 PF13041 55 - 92 3.9e-11 PPR repeat family
PPR PF01535 58 - 88 3.8e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AfaI GTAC 3 cut(s) 26, 58, 68
AfiI CCNNNNNNNGG 2 cut(s) 84, 85
AjiI CACGTC 1 cut(s) 139
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
AoxI GGCC 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 128
AspA2I CCTAGG 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 87
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 247
AvrII CCTAGG 1 cut(s) 82
BccI CCATC 2 cut(s) 202, 241
BclI TGATCA 1 cut(s) 189
BcnI CCSGG 1 cut(s) 16
BfaI CTAG 1 cut(s) 83
BlnI CCTAGG 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 85
BseDI CCNNGG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 84, 85
BseMII CTCAG 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 293
BshFI GGCC 1 cut(s) 89
BsiSI CCGG 2 cut(s) 15, 143
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 84, 85
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 82
Bst4CI ACNGT 2 cut(s) 50, 61
Bst6I CTCTTC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 39
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 293
BsuRI GGCC 1 cut(s) 89
BtrI CACGTC 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 3 cut(s) 25, 57, 67
CviJI RGCY 4 cut(s) 89, 163, 268, 277
CviKI_1 RGCY 4 cut(s) 89, 163, 268, 277
CviQI GTAC 3 cut(s) 25, 57, 67
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaiI YATR 3 cut(s) 116, 178, 188
FaqI GGGAC 1 cut(s) 149
FbaI TGATCA 1 cut(s) 189
FspBI CTAG 1 cut(s) 83
GsaI CCCAGC 1 cut(s) 297
HaeIII GGCC 1 cut(s) 89
HapII CCGG 2 cut(s) 15, 143
HinfI GANTC 2 cut(s) 212, 221
HpaII CCGG 2 cut(s) 15, 143
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 50, 61
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 138
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 6 cut(s) 28, 103, 156, 177, 279, 282
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 138
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 2 cut(s) 31, 136
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 3 cut(s) 48, 89, 307
MroXI GAANNNNTTC 1 cut(s) 128
MspI CCGG 2 cut(s) 15, 143
MspR9I CCNGG 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 274
NciI CCSGG 1 cut(s) 16
NdeII GATC 1 cut(s) 189
NlaIV GGNNCC 1 cut(s) 88
PctI GAATGC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 212
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 87
RsaI GTAC 3 cut(s) 26, 58, 68
RsaNI GTAC 3 cut(s) 25, 57, 67
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 87
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 16
SetI ASST 2 cut(s) 141, 279
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 2 cut(s) 50, 61
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 155
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 1 cut(s) 66
TspRI CASTG 1 cut(s) 66
XmaJI CCTAGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.