Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008308.1

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Reverse (-)

35439 .. 35914

Gene Structure 476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008308.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgtccagcatcaattccctggtttgctcgactgcaatcgtattgcaattaaggtggggtcaaatggtggagaagaatgttgttcctgatattaggagctacaatgctaagttgctgggattggctttggagaagaggagtgaagaaggggctcaattacttcaatgccttgataagggatttgtgaatgagggcaacttggatgaagctaagcggtggtatggtgaaatagagaagagtagttgtgctctggataaatggactttcgagacccttgttcccttcgtttgtgagatgggtgatgtggagtatgcttttgagctctgcaaggacattttccaaaggcgccgccttgtgggtgcagcattgttgcagcctgtggtggatggtctggtcaaggcctccgtgattgaggggaggcaaatgaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

143

Amino Acids

16.07

Weight (kDa)

5.09

Isoelectric Point (pI)

65.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	345
AciI	CCGC	2 cut(s)	214, 349
AcyI	GRCGYC	1 cut(s)	346
AfiI	CCNNNNNNNGG	2 cut(s)	175, 355
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	3 cut(s)	99, 209, 322
AluI	AGCT	3 cut(s)	99, 209, 322
Alw21I	GWGCWC	2 cut(s)	250, 324
Alw26I	GTCTC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	362, 373
AspLEI	GCGC	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	236, 311
BanI	GGYRCC	1 cut(s)	345
BanII	GRGCYC	2 cut(s)	154, 324
Bbv12I	GWGCWC	2 cut(s)	250, 324
BbvI	GCAGC	2 cut(s)	374, 385
BccI	CCATC	2 cut(s)	289, 380
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	430
BfoI	RGCGCY	1 cut(s)	349
BisI	GCNGC	3 cut(s)	349, 363, 374
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	3 cut(s)	350, 364, 375
Bme1390I	CCNGG	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	18
Bpu1102I	GCTNAGC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	346
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 355
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	208, 391
BseLI	CCNNNNNNNGG	2 cut(s)	175, 355
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	374, 385
BseYI	CCCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	401
BshNI	GGYRCC	1 cut(s)	345
BsiHKAI	GWGCWC	2 cut(s)	250, 324
BslI	CCNNNNNNNGG	2 cut(s)	175, 355
BsmAI	GTCTC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	401
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	154, 250, 324
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	214, 349
BspANI	GGCC	1 cut(s)	401
BspLI	GGNNCC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	18
BssNI	GRCGYC	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	20
Bst6I	CTCTTC	2 cut(s)	128, 230
BstACI	GRCGYC	1 cut(s)	346
BstDEI	CTNAG	2 cut(s)	108, 210
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	208, 391
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	374, 385
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	208, 391
CfoI	GCGC	1 cut(s)	348
CspCI	CAANNNNNGTGG	2 cut(s)	35, 70
CviJI	RGCY	7 cut(s)	99, 125, 152, 209, 322, 376, 401
CviKI_1	RGCY	7 cut(s)	99, 125, 152, 209, 322, 376, 401
DdeI	CTNAG	2 cut(s)	108, 210
DinI	GGCGCC	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	128, 230
EarI	CTCTTC	2 cut(s)	128, 230
Ecl136II	GAGCTC	1 cut(s)	322
Eco147I	AGGCCT	1 cut(s)	401
Eco24I	GRGCYC	2 cut(s)	154, 324
Eco31I	GGTCTC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	322
EcoICRI	GAGCTC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	154, 324
EgeI	GGCGCC	1 cut(s)	347
EheI	GGCGCC	1 cut(s)	347
FaiI	YATR	2 cut(s)	222, 312
Fnu4HI	GCNGC	3 cut(s)	349, 363, 374
FokI	GGATG	2 cut(s)	215, 398
FriOI	GRGCYC	2 cut(s)	154, 324
Fsp4HI	GCNGC	3 cut(s)	349, 363, 374
FspBI	CTAG	1 cut(s)	430
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	3 cut(s)	349, 363, 374
GsaI	CCCAGC	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	401
HhaI	GCGC	1 cut(s)	348
Hin1I	GRCGYC	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HphI	GGTGA	2 cut(s)	236, 311
Hpy188III	TCNNGA	3 cut(s)	86, 251, 268
HpyAV	CCTTC	2 cut(s)	140, 292
HpyCH4V	TGCA	5 cut(s)	35, 46, 327, 362, 373
HpyF3I	CTNAG	2 cut(s)	108, 210
Hsp92I	GRCGYC	1 cut(s)	346
HspAI	GCGC	1 cut(s)	346
KasI	GGCGCC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	8 cut(s)	5, 19, 32, 99, 101, 236, 377, 390
Lsp1109I	GCAGC	2 cut(s)	374, 385
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	430
MboII	GAAGA	4 cut(s)	85, 145, 155, 247
MhlI	GDGCHC	3 cut(s)	154, 250, 324
MluCI	AATT	3 cut(s)	13, 47, 155
Mly113I	GGCGCC	1 cut(s)	346
MnlI	CCTC	5 cut(s)	129, 184, 406, 411, 412
MseI	TTAA	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
NarI	GGCGCC	1 cut(s)	346
NlaIV	GGNNCC	1 cut(s)	347
PceI	AGGCCT	1 cut(s)	401
PkrI	GCNGC	3 cut(s)	350, 364, 375
PluTI	GGCGCC	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	3 cut(s)	349, 363, 374
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	3 cut(s)	154, 250, 324
SetI	ASST	4 cut(s)	56, 101, 211, 324
SfaNI	GCATC	1 cut(s)	18
SfoI	GGCGCC	1 cut(s)	347
Sse9I	AATT	3 cut(s)	13, 47, 155
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	2 cut(s)	214, 349
SspDI	GGCGCC	1 cut(s)	345
SspMI	CTAG	1 cut(s)	430
SstI	GAGCTC	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	18
TaqI	TCGA	2 cut(s)	29, 267
TasI	AATT	3 cut(s)	13, 47, 155
TauI	GCSGC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseI	GCWGC	2 cut(s)	362, 373
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	394
XagI	CCTNNNNNAGG	1 cut(s)	173
XspI	CTAG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.