Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010871.1

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Forward (+)

40639 .. 41114

Gene Structure 476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010871.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgtccagcatcaattccctggtttgctcgactgcaatcgtattgcaattaaggtgggttcaaatggtggagaagaatgttgttcctgatattaggagctacaatgctaagttgctgggattggctttcgagaagaggagtgaagaaggggctcaattacttcaatgccttgataagggatttgtgaatgagggcaacttggatgaagctaagcggtggtatggtgaaatagagaagagtagttgtgctctggataaatggactttcgagacccttgttcccttcgtttgtgagatgggtgatgtggagtatgcttttgagctctgcaaggacattttccaaaggagccgccttgtgggtgcagcattgttgcagcctgtggtagatggtctggtcaaggcctccgtgattgaggggaggcaaatgaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

143

Amino Acids

16.08

Weight (kDa)

4.94

Isoelectric Point (pI)

61.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	214, 349
AfiI	CCNNNNNNNGG	2 cut(s)	175, 355
AgsI	TTSAA	2 cut(s)	62, 164
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	3 cut(s)	99, 209, 322
AluI	AGCT	3 cut(s)	99, 209, 322
Alw21I	GWGCWC	2 cut(s)	250, 324
Alw26I	GTCTC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	362, 373
AsuHPI	GGTGA	2 cut(s)	236, 311
BanII	GRGCYC	2 cut(s)	154, 324
Bbv12I	GWGCWC	2 cut(s)	250, 324
BbvI	GCAGC	2 cut(s)	374, 385
BccI	CCATC	2 cut(s)	289, 380
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	430
BisI	GCNGC	3 cut(s)	349, 363, 374
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	3 cut(s)	350, 364, 375
Bme1390I	CCNGG	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	18
Bpu1102I	GCTNAGC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 355
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	175, 355
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	374, 385
BseYI	CCCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	401
BsiHKAI	GWGCWC	2 cut(s)	250, 324
BslI	CCNNNNNNNGG	2 cut(s)	175, 355
BsmAI	GTCTC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	401
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	154, 250, 324
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	214, 349
BspANI	GGCC	1 cut(s)	401
BspLI	GGNNCC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	20
Bst6I	CTCTTC	2 cut(s)	128, 230
BstDEI	CTNAG	2 cut(s)	108, 210
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	374, 385
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	208
CspCI	CAANNNNNGTGG	2 cut(s)	35, 70
CviJI	RGCY	8 cut(s)	99, 125, 152, 209, 322, 348, 376, 401
CviKI_1	RGCY	8 cut(s)	99, 125, 152, 209, 322, 348, 376, 401
DdeI	CTNAG	2 cut(s)	108, 210
Eam1104I	CTCTTC	2 cut(s)	128, 230
EarI	CTCTTC	2 cut(s)	128, 230
Ecl136II	GAGCTC	1 cut(s)	322
Eco147I	AGGCCT	1 cut(s)	401
Eco24I	GRGCYC	2 cut(s)	154, 324
Eco31I	GGTCTC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	322
EcoICRI	GAGCTC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	154, 324
FaiI	YATR	2 cut(s)	222, 312
Fnu4HI	GCNGC	3 cut(s)	349, 363, 374
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	2 cut(s)	154, 324
Fsp4HI	GCNGC	3 cut(s)	349, 363, 374
FspBI	CTAG	1 cut(s)	430
GluI	GCNGC	3 cut(s)	349, 363, 374
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	401
HphI	GGTGA	2 cut(s)	236, 311
Hpy188III	TCNNGA	4 cut(s)	86, 130, 251, 268
HpyAV	CCTTC	2 cut(s)	140, 292
HpyCH4V	TGCA	5 cut(s)	35, 46, 327, 362, 373
HpyF3I	CTNAG	2 cut(s)	108, 210
LmnI	GCTCC	2 cut(s)	96, 345
LpnPI	CCDG	8 cut(s)	5, 19, 32, 99, 101, 236, 377, 390
Lsp1109I	GCAGC	2 cut(s)	374, 385
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	430
MboII	GAAGA	4 cut(s)	85, 145, 155, 247
MhlI	GDGCHC	3 cut(s)	154, 250, 324
MluCI	AATT	3 cut(s)	13, 47, 155
MnlI	CCTC	5 cut(s)	129, 184, 406, 411, 412
MseI	TTAA	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
NlaIV	GGNNCC	1 cut(s)	347
PceI	AGGCCT	1 cut(s)	401
PkrI	GCNGC	3 cut(s)	350, 364, 375
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	3 cut(s)	349, 363, 374
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	3 cut(s)	154, 250, 324
SetI	ASST	4 cut(s)	56, 101, 211, 324
SfaNI	GCATC	1 cut(s)	18
Sse9I	AATT	3 cut(s)	13, 47, 155
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	2 cut(s)	214, 349
SspMI	CTAG	1 cut(s)	430
SstI	GAGCTC	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	18
TaqI	TCGA	3 cut(s)	29, 129, 267
TasI	AATT	3 cut(s)	13, 47, 155
TauI	GCSGC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseI	GCWGC	2 cut(s)	362, 373
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	394
XagI	CCTNNNNNAGG	1 cut(s)	173
XspI	CTAG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.