Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Reverse (-)

1615982 .. 1617349

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03043.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCGTCCCTCACGAAGTAATCATAGGTTGAGTCTTGATTTAGGGTCGGCGAGCAGAGAATCGGGTGTTCCCAAACTCTTCCCTTGCTCTCTAGAAAACTCGAGAGATATTGGGCATACCGGTGTCCTCTGGAAAGAGAAGAGTGGAGGGTTCCGGTTCCCTCTTAAGTTGGTCTCTCCCCCCAAAACCTCTCCCCTTCTCCTTCTCAGAGACCCCCCAAAAGAAAATCGGAGAAAGCCCCCAAAGATAGAGAGAGACCTGAAGAGTGGTTGTGCTCCGGATAAATGGACTTTCGAGACGCTTGTTCCCTTTGCTTGTGAGAAGGGTGATGTGGATTATGGTTTTGAGCTCTGCAAGGATATTTTCCAAAGGCGCCGTCTTGCTAGTGCGGCAATGTTGCAGCCTGTGGTGGATGGTCTGGTACGGTTAAGGCCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

147

Amino Acids

16.47

Weight (kDa)

9.85

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	372
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	373
AfaI	GTAC	1 cut(s)	423
AflII	CTTAAG	1 cut(s)	164
AgeI	ACCGGT	1 cut(s)	119
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw21I	GWGCWC	2 cut(s)	277, 351
Alw26I	GTCTC	4 cut(s)	178, 204, 249, 290
Ama87I	CYCGRG	1 cut(s)	100
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	400
ArsI	GACNNNNNNTTYG	2 cut(s)	361, 393
AsiGI	ACCGGT	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	375
AsuHPI	GGTGA	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	351
Bbv12I	GWGCWC	2 cut(s)	277, 351
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	1 cut(s)	360
BcoDI	GTCTC	4 cut(s)	178, 204, 249, 290
BfaI	CTAG	2 cut(s)	92, 384
BfoI	RGCGCY	1 cut(s)	376
BfrI	CTTAAG	1 cut(s)	164
BisI	GCNGC	2 cut(s)	390, 401
BlsI	GCNGC	2 cut(s)	391, 402
BmeT110I	CYCGRG	1 cut(s)	100
BmiI	GGNNCC	3 cut(s)	152, 158, 374
BsaHI	GRCGYC	1 cut(s)	373
BsaI	GGTCTC	3 cut(s)	178, 204, 249
BsaWI	WCCGGW	3 cut(s)	119, 153, 277
Bse118I	RCCGGY	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	277
BseGI	GGATG	1 cut(s)	418
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	412
BshFI	GGCC	1 cut(s)	433
BshNI	GGYRCC	1 cut(s)	372
BshTI	ACCGGT	1 cut(s)	119
BsiHKAI	GWGCWC	2 cut(s)	277, 351
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	3 cut(s)	120, 154, 278
BsmAI	GTCTC	4 cut(s)	178, 204, 249, 290
BsmBI	CGTCTC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	433
Bso31I	GGTCTC	3 cut(s)	178, 204, 249
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	277, 351
Bsp13I	TCCGGA	1 cut(s)	277
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	433
BspCNI	CTCAG	1 cut(s)	219
BspEI	TCCGGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	152, 158, 374
BspT107I	GGYRCC	1 cut(s)	372
BspTI	CTTAAG	1 cut(s)	164
BspTNI	GGTCTC	3 cut(s)	178, 204, 249
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssNI	GRCGYC	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	426
Bst6I	CTCTTC	3 cut(s)	83, 134, 257
BstACI	GRCGYC	1 cut(s)	373
BstAFI	CTTAAG	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	418
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	375
BstMAI	GTCTC	4 cut(s)	178, 204, 249, 290
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	418
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	119
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	422
CspAI	ACCGGT	1 cut(s)	119
CviJI	RGCY	4 cut(s)	238, 349, 403, 433
CviKI_1	RGCY	4 cut(s)	238, 349, 403, 433
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	1 cut(s)	206
DinI	GGCGCC	1 cut(s)	374
Eam1104I	CTCTTC	3 cut(s)	83, 134, 257
EarI	CTCTTC	3 cut(s)	83, 134, 257
Ecl136II	GAGCTC	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	351
Eco31I	GGTCTC	3 cut(s)	178, 204, 249
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	351
EgeI	GGCGCC	1 cut(s)	374
EheI	GGCGCC	1 cut(s)	374
Esp3I	CGTCTC	1 cut(s)	290
FaiI	YATR	4 cut(s)	24, 117, 339, 439
Fnu4HI	GCNGC	2 cut(s)	390, 401
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	390, 401
FspBI	CTAG	2 cut(s)	92, 384
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	2 cut(s)	390, 401
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	433
HapII	CCGG	3 cut(s)	120, 154, 278
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	375
Hin1I	GRCGYC	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HinfI	GANTC	2 cut(s)	31, 59
HpaII	CCGG	3 cut(s)	120, 154, 278
HphI	GGTGA	1 cut(s)	338
Hpy188I	TCNGA	2 cut(s)	209, 231
Hpy188III	TCNNGA	7 cut(s)	12, 35, 92, 102, 130, 278, 295
HpyAV	CCTTC	3 cut(s)	206, 212, 316
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4V	TGCA	2 cut(s)	354, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	373
HspAI	GCGC	1 cut(s)	373
KasI	GGCGCC	1 cut(s)	372
Kpn2I	TCCGGA	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	7 cut(s)	115, 133, 167, 272, 291, 404, 417
Lsp1109I	GCAGC	1 cut(s)	412
MaeI	CTAG	2 cut(s)	92, 384
MboII	GAAGA	3 cut(s)	70, 151, 274
MhlI	GDGCHC	2 cut(s)	277, 351
Mly113I	GGCGCC	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	5 cut(s)	19, 137, 140, 171, 199
MroI	TCCGGA	1 cut(s)	277
MseI	TTAA	2 cut(s)	165, 428
MslI	CAYNNNNRTG	1 cut(s)	120
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	3 cut(s)	120, 154, 278
MwoI	GCNNNNNNNGC	1 cut(s)	389
NarI	GGCGCC	1 cut(s)	373
NlaIV	GGNNCC	3 cut(s)	152, 158, 374
PaeR7I	CTCGAG	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	59
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	391, 402
PleI	GAGTC	1 cut(s)	39
PluTI	GGCGCC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	351
PspN4I	GGNNCC	3 cut(s)	152, 158, 374
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	165, 428
SatI	GCNGC	2 cut(s)	390, 401
SchI	GAGTC	1 cut(s)	40
SduI	GDGCHC	2 cut(s)	277, 351
SetI	ASST	4 cut(s)	29, 191, 261, 351
SfoI	GGCGCC	1 cut(s)	374
Sfr274I	CTCGAG	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	100, 164
SmoI	CTYRAG	2 cut(s)	100, 164
SseBI	AGGCCT	1 cut(s)	433
SsiI	CCGC	1 cut(s)	389
SspDI	GGCGCC	1 cut(s)	372
SspMI	CTAG	2 cut(s)	92, 384
SstI	GAGCTC	1 cut(s)	351
StuI	AGGCCT	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	101, 294
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	165, 428
Tru9I	TTAA	2 cut(s)	165, 428
TseI	GCWGC	1 cut(s)	400
Vha464I	CTTAAG	1 cut(s)	164
XbaI	TCTAGA	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	100
XspI	CTAG	2 cut(s)	92, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.