Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Reverse (-)

3481314 .. 3481762

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031261

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTGGGGTCAAATGGTGGAGAAGAATGTTGTTCCTGATATTAGGAGCTACAATGCTAAGTTGCTGGGATTGGCTTTGGAGAAGAGGAGTGAAGAAGGGGCTCAATTAGTTGAAGAGTTGAGGAGTATTGGAACGCTTGTTCCCTTCGTTTGTGAGATGGGTAATGTGGAGTATGCTTTTGAGCTCTGCAAGGACATTTTCCAAAGGCACCGCCTTGTGGGTGCAGCATTGTTGCAGCCTGTGGTGGATGGTCTGGTCAAGGCCTCCATGATTGAGGAGGCAAATGAACTAGTCAACCTTAGGATCACTAATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

106

Amino Acids

11.75

Weight (kDa)

4.98

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	207
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	113
AhlI	ACTAGT	1 cut(s)	289
AloI	GAACNNNNNNTCC	4 cut(s)	123, 124, 155, 156
AluBI	AGCT	2 cut(s)	48, 184
AluI	AGCT	2 cut(s)	48, 184
Alw21I	GWGCWC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	224, 235
AxyI	CCTNAGG	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	103, 186
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	236, 247
BccI	CCATC	2 cut(s)	151, 242
BcuI	ACTAGT	1 cut(s)	289
BfaI	CTAG	1 cut(s)	290
BisI	GCNGC	2 cut(s)	225, 236
BlsI	GCNGC	2 cut(s)	226, 237
BmiI	GGNNCC	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse21I	CCTNAGG	1 cut(s)	299
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseRI	GAGGAG	3 cut(s)	100, 136, 290
BseXI	GCAGC	2 cut(s)	236, 247
BseYI	CCCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	217
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	103, 186
Bsp143I	GATC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	207
BssMI	GATC	1 cut(s)	303
Bst6I	CTCTTC	2 cut(s)	77, 108
BstDEI	CTNAG	2 cut(s)	57, 299
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	236, 247
Bsu36I	CCTNAGG	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	253
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	6 cut(s)	48, 74, 101, 184, 238, 263
CviKI_1	RGCY	6 cut(s)	48, 74, 101, 184, 238, 263
DdeI	CTNAG	2 cut(s)	57, 299
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
Eam1104I	CTCTTC	2 cut(s)	77, 108
EarI	CTCTTC	2 cut(s)	77, 108
Ecl136II	GAGCTC	1 cut(s)	184
Eco147I	AGGCCT	1 cut(s)	263
Eco24I	GRGCYC	2 cut(s)	103, 186
Eco53kI	GAGCTC	1 cut(s)	184
Eco81I	CCTNAGG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	184
EcoT38I	GRGCYC	2 cut(s)	103, 186
FaeI	CATG	1 cut(s)	271
FaiI	YATR	2 cut(s)	174, 269
FatI	CATG	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	225, 236
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	2 cut(s)	103, 186
Fsp4HI	GCNGC	2 cut(s)	225, 236
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	2 cut(s)	225, 236
GsaI	CCCAGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	2 cut(s)	89, 154
HpyCH4V	TGCA	3 cut(s)	189, 224, 235
HpyF3I	CTNAG	2 cut(s)	57, 299
Hsp92II	CATG	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	4 cut(s)	48, 50, 239, 252
Lsp1109I	GCAGC	2 cut(s)	236, 247
MaeI	CTAG	1 cut(s)	290
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	4 cut(s)	34, 94, 104, 125
MhlI	GDGCHC	2 cut(s)	103, 186
MluCI	AATT	2 cut(s)	104, 310
MnlI	CCTC	5 cut(s)	78, 114, 268, 271, 274
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	226, 237
Psp124BI	GAGCTC	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	186
SatI	GCNGC	2 cut(s)	225, 236
Sau3AI	GATC	1 cut(s)	303
SduI	GDGCHC	2 cut(s)	103, 186
SetI	ASST	3 cut(s)	50, 186, 300
SpeI	ACTAGT	1 cut(s)	289
Sse9I	AATT	2 cut(s)	104, 310
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	186
StuI	AGGCCT	1 cut(s)	263
TasI	AATT	2 cut(s)	104, 310
TseI	GCWGC	2 cut(s)	224, 235
TspDTI	ATGAA	1 cut(s)	300
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.