Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008308.1

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Reverse (-)

5927 .. 7075

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008308.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgtcgtttggtcgcctcctccgccgtgcattctccaccgccgccacccagcccaaacccacaaccgccaagagcatcagagccatctccgccgacctcgacagagagcgcaacctcaaacacctcgtcaagaagttcaaagagtcctcagagctctaccgcttccgaaccaaaacccccatttacgaagagaccgttcgccgcctcaccaacgccaagcgcttccgtgcgatcgaagaaatcctagaggaccagaagaagtacccggatttctccgacgagggtttcgccgtccgaatcctttccctttatggaaaggcgggcatgtttgagaatgcccagaaggtgttcgacgaaatgcctgagagaaactgcggccgcaccgtgttgtctttcaatgccctcctgggggcctgcgtgaactccaagaagtttgatatggttgagaagattttcggggaggtaccggagaagttgtcgattgagccggatttggtgtcgtacaatactgtgatcaaggcattttgcaagatgggttcgtttgactctgcggtttcggtgattgatgtgatggagaagaagggtgtgaagccggatgtaatcacgttcaatacgattttggattgcttgtatgggaataagcggtttttggatgctgagaagatatggggtcaaatggtggagaagaatgtcgttcctaatattaggagctacaatgccaaattgctggggtttgctttggagaagaggagtgaagaaggggctcagttagttgaagagttgaggaatattggagtgaaacctgatgtgttcaccttcaatgccttgattaagggctttgtgaatggggggaacttgggtgaagctaagcggtggtatggtgaaatagagaagagtagttgtgctccagataaatgcacttttgagacgcttgttccctttgtttgtgagaaggatgattttgagttttcttttgagctgtgcaaggacattttccaaaggcgccgccttgtgagtgcggcactgttgcagcctgtggtggatggactggtcaaggcctccatgattgaggaggcaaaggaacttgtcaaacttgggaacactaataactacagacgttttaatctgaagctgacttcagacaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

382

Amino Acids

43.51

Weight (kDa)

8.98

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	463
AccB1I	GGYRCC	2 cut(s)	463, 1002
AcoI	YGGCCR	1 cut(s)	376
AcuI	CTGAAG	2 cut(s)	1122, 1148
AcyI	GRCGYC	1 cut(s)	1003
AfaI	GTAC	3 cut(s)	263, 465, 503
AfeI	AGCGCT	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	408, 409
AgsI	TTSAA	5 cut(s)	139, 397, 610, 776, 820
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	5 cut(s)	154, 711, 866, 979, 1132
AluI	AGCT	5 cut(s)	154, 711, 866, 979, 1132
Alw21I	GWGCWC	2 cut(s)	156, 907
Alw26I	GTCTC	2 cut(s)	185, 920
Aor51HI	AGCGCT	1 cut(s)	221
AoxI	GGCC	3 cut(s)	376, 411, 1056
ApeKI	GCWGC	1 cut(s)	1030
ArsI	GACNNNNNNTTYG	4 cut(s)	111, 143, 269, 301
Asp700I	GAANNNNTTC	3 cut(s)	301, 347, 452
Asp718I	GGTACC	1 cut(s)	463
AspLEI	GCGC	3 cut(s)	111, 222, 1005
AspS9I	GGNCC	2 cut(s)	250, 411
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	5 cut(s)	199, 571, 805, 872, 893
AvaII	GGWCC	1 cut(s)	250
BanI	GGYRCC	2 cut(s)	463, 1002
BanII	GRGCYC	2 cut(s)	156, 766
Bbv12I	GWGCWC	2 cut(s)	156, 907
BbvI	GCAGC	1 cut(s)	1042
BccI	CCATC	4 cut(s)	92, 526, 565, 1037
BceAI	ACGGC	2 cut(s)	9, 275
BciT130I	CCWGG	1 cut(s)	407
BclI	TGATCA	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	185, 920
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	1111
BfoI	RGCGCY	2 cut(s)	223, 1006
BisI	GCNGC	7 cut(s)	42, 202, 376, 379, 1006, 1020, 1031
BlpI	GCTNAGC	1 cut(s)	867
BlsI	GCNGC	7 cut(s)	43, 203, 377, 380, 1007, 1021, 1032
Bme1390I	CCNGG	2 cut(s)	266, 407
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	250, 411
BmiI	GGNNCC	3 cut(s)	412, 465, 1004
BmrFI	CCNGG	2 cut(s)	266, 407
BmsI	GCATC	2 cut(s)	84, 643
BpmI	CTGGAG	1 cut(s)	891
Bpu1102I	GCTNAGC	1 cut(s)	867
BpuMI	CCSGG	1 cut(s)	266
BsaHI	GRCGYC	1 cut(s)	1003
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 409
Bse1I	ACTGG	1 cut(s)	1053
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	4 cut(s)	601, 658, 961, 1048
BseLI	CCNNNNNNNGG	2 cut(s)	408, 409
BseMII	CTCAG	4 cut(s)	162, 354, 648, 779
BseNI	ACTGG	1 cut(s)	1053
BseRI	GAGGAG	3 cut(s)	8, 763, 1085
BseX3I	CGGCCG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	1042
BseYI	CCCAGC	2 cut(s)	48, 727
Bsh1285I	CGRYCG	2 cut(s)	234, 379
BshFI	GGCC	3 cut(s)	378, 413, 1058
BshNI	GGYRCC	2 cut(s)	463, 1002
BsiEI	CGRYCG	2 cut(s)	234, 379
BsiHKAI	GWGCWC	2 cut(s)	156, 907
BsiSI	CCGG	4 cut(s)	266, 467, 488, 593
BslI	CCNNNNNNNGG	2 cut(s)	408, 409
BsmAI	GTCTC	2 cut(s)	185, 920
BsmBI	CGTCTC	1 cut(s)	920
BsmI	GAATGC	2 cut(s)	29, 340
BsnI	GGCC	3 cut(s)	378, 413, 1058
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	156, 766, 907
Bsp143I	GATC	2 cut(s)	231, 513
Bsp1720I	GCTNAGC	1 cut(s)	867
BspANI	GGCC	3 cut(s)	378, 413, 1058
BspCNI	CTCAG	4 cut(s)	161, 355, 649, 778
BspLI	GGNNCC	3 cut(s)	412, 465, 1004
BspT107I	GGYRCC	2 cut(s)	463, 1002
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	1053
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	2 cut(s)	231, 513
BssNI	GRCGYC	1 cut(s)	1003
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	4 cut(s)	196, 385, 511, 1026
Bst6I	CTCTTC	4 cut(s)	183, 740, 771, 887
BstACI	GRCGYC	1 cut(s)	1003
BstC8I	GCNNGC	2 cut(s)	322, 415
BstDEI	CTNAG	5 cut(s)	148, 363, 657, 765, 867
BstF5I	GGATG	4 cut(s)	601, 658, 961, 1048
BstH2I	RGCGCY	2 cut(s)	223, 1006
BstHHI	GCGC	3 cut(s)	111, 222, 1005
BstKTI	GATC	2 cut(s)	234, 516
BstMAI	GTCTC	2 cut(s)	185, 920
BstMBI	GATC	2 cut(s)	231, 513
BstMCI	CGRYCG	2 cut(s)	234, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 89
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	264, 405
BstSFI	CTRYAG	1 cut(s)	1111
BstV1I	GCAGC	1 cut(s)	1042
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstZI	CGGCCG	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	378, 413, 1058
BtsCI	GGATG	4 cut(s)	601, 658, 961, 1048
BtsIMutI	CAGTG	1 cut(s)	1022
Cac8I	GCNNGC	2 cut(s)	322, 415
CciNI	GCGGCCGC	1 cut(s)	376
CfoI	GCGC	3 cut(s)	111, 222, 1005
Cfr13I	GGNCC	2 cut(s)	250, 411
CseI	GACGC	1 cut(s)	937
Csp6I	GTAC	3 cut(s)	262, 464, 502
CviAII	CATG	2 cut(s)	325, 1063
CviQI	GTAC	3 cut(s)	262, 464, 502
DdeI	CTNAG	5 cut(s)	148, 363, 657, 765, 867
DinI	GGCGCC	1 cut(s)	1004
DpnI	GATC	2 cut(s)	233, 515
DpnII	GATC	2 cut(s)	231, 513
EaeI	YGGCCR	1 cut(s)	376
EagI	CGGCCG	1 cut(s)	376
Eam1104I	CTCTTC	4 cut(s)	183, 740, 771, 887
EarI	CTCTTC	4 cut(s)	183, 740, 771, 887
EciI	GGCGGA	2 cut(s)	11, 79
Ecl136II	GAGCTC	1 cut(s)	154
EclXI	CGGCCG	1 cut(s)	376
Eco147I	AGGCCT	1 cut(s)	1058
Eco24I	GRGCYC	2 cut(s)	156, 766
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	250
Eco47III	AGCGCT	1 cut(s)	221
Eco52I	CGGCCG	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	2 cut(s)	1122, 1148
EcoICRI	GAGCTC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	405
EcoT38I	GRGCYC	2 cut(s)	156, 766
EgeI	GGCGCC	1 cut(s)	1004
EheI	GGCGCC	1 cut(s)	1004
Esp3I	CGTCTC	1 cut(s)	920
FaeI	CATG	2 cut(s)	328, 1066
FaiI	YATR	7 cut(s)	312, 326, 440, 633, 667, 879, 1064
FatI	CATG	2 cut(s)	324, 1062
FauI	CCCGC	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	513
Fnu4HI	GCNGC	7 cut(s)	42, 202, 376, 379, 1006, 1020, 1031
FokI	GGATG	4 cut(s)	608, 665, 968, 1055
FriOI	GRGCYC	2 cut(s)	156, 766
Fsp4HI	GCNGC	7 cut(s)	42, 202, 376, 379, 1006, 1020, 1031
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	3 cut(s)	110, 221, 1004
GluI	GCNGC	7 cut(s)	42, 202, 376, 379, 1006, 1020, 1031
GsaI	CCCAGC	2 cut(s)	52, 731
GsuI	CTGGAG	1 cut(s)	891
HaeII	RGCGCY	2 cut(s)	223, 1006
HaeIII	GGCC	3 cut(s)	378, 413, 1058
HapII	CCGG	4 cut(s)	266, 467, 488, 593
HgaI	GACGC	1 cut(s)	937
HhaI	GCGC	3 cut(s)	111, 222, 1005
Hin1I	GRCGYC	1 cut(s)	1003
Hin1II	CATG	2 cut(s)	328, 1066
Hin6I	GCGC	3 cut(s)	109, 220, 1003
HinP1I	GCGC	3 cut(s)	109, 220, 1003
HinfI	GANTC	3 cut(s)	143, 297, 545
HpaII	CCGG	4 cut(s)	266, 467, 488, 593
HphI	GGTGA	5 cut(s)	199, 571, 805, 872, 893
Hpy166II	GTNNAC	2 cut(s)	421, 813
Hpy188I	TCNGA	7 cut(s)	80, 151, 167, 277, 296, 1128, 1141
Hpy188III	TCNNGA	2 cut(s)	130, 908
Hpy8I	GTNNAC	2 cut(s)	421, 813
Hpy99I	CGWCG	2 cut(s)	281, 356
HpyAV	CCTTC	5 cut(s)	337, 574, 752, 826, 946
HpyCH4III	ACNGT	4 cut(s)	196, 385, 511, 1026
HpyCH4IV	ACGT	2 cut(s)	605, 1117
HpyCH4V	TGCA	5 cut(s)	29, 528, 918, 984, 1030
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 89
HpyF3I	CTNAG	5 cut(s)	148, 363, 657, 765, 867
HpySE526I	ACGT	2 cut(s)	605, 1117
Hsp92I	GRCGYC	1 cut(s)	1003
Hsp92II	CATG	2 cut(s)	328, 1066
HspAI	GCGC	3 cut(s)	109, 220, 1003
KasI	GGCGCC	1 cut(s)	1002
KpnI	GGTACC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	2 cut(s)	231, 513
LmnI	GCTCC	2 cut(s)	708, 910
Lsp1109I	GCAGC	1 cut(s)	1042
LweI	GCATC	2 cut(s)	84, 643
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	2 cut(s)	605, 1117
MalI	GATC	2 cut(s)	233, 515
MboI	GATC	2 cut(s)	231, 513
MhlI	GDGCHC	3 cut(s)	156, 766, 907
MluCI	AATT	1 cut(s)	722
Mly113I	GGCGCC	1 cut(s)	1003
MlyI	GAGTC	2 cut(s)	152, 539
MmeI	TCCRAC	1 cut(s)	300
MroXI	GAANNNNTTC	3 cut(s)	301, 347, 452
MseI	TTAA	2 cut(s)	831, 1122
MspI	CCGG	4 cut(s)	266, 467, 488, 593
MspR9I	CCNGG	2 cut(s)	266, 407
Mva1269I	GAATGC	2 cut(s)	29, 340
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	21, 89
NarI	GGCGCC	1 cut(s)	1003
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	2 cut(s)	231, 513
NlaIII	CATG	2 cut(s)	328, 1066
NlaIV	GGNNCC	3 cut(s)	412, 465, 1004
NotI	GCGGCCGC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	1058
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 611
PctI	GAATGC	2 cut(s)	29, 340
PdmI	GAANNNNTTC	3 cut(s)	301, 347, 452
PfeI	GAWTC	1 cut(s)	297
PkrI	GCNGC	7 cut(s)	43, 203, 377, 380, 1007, 1021, 1032
Ple19I	CGATCG	1 cut(s)	234
PleI	GAGTC	2 cut(s)	151, 539
PluTI	GGCGCC	1 cut(s)	1006
PpsI	GAGTC	2 cut(s)	151, 539
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	405
PspFI	CCCAGC	2 cut(s)	48, 727
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	3 cut(s)	412, 465, 1004
PspPI	GGNCC	2 cut(s)	250, 411
PvuI	CGATCG	1 cut(s)	234
RsaI	GTAC	3 cut(s)	263, 465, 503
RsaNI	GTAC	3 cut(s)	262, 464, 502
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	831, 1122
SatI	GCNGC	7 cut(s)	42, 202, 376, 379, 1006, 1020, 1031
Sau3AI	GATC	2 cut(s)	231, 513
Sau96I	GGNCC	2 cut(s)	250, 411
SchI	GAGTC	2 cut(s)	152, 539
ScrFI	CCNGG	2 cut(s)	266, 407
SduI	GDGCHC	3 cut(s)	156, 766, 907
SfaNI	GCATC	2 cut(s)	84, 643
SfcI	CTRYAG	1 cut(s)	1111
SfoI	GGCGCC	1 cut(s)	1004
SinI	GGWCC	1 cut(s)	250
Sse9I	AATT	1 cut(s)	722
SseBI	AGGCCT	1 cut(s)	1058
SspDI	GGCGCC	1 cut(s)	1002
SspI	AATATT	2 cut(s)	703, 790
SspMI	CTAG	1 cut(s)	245
SstI	GAGCTC	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	1058
StyD4I	CCNGG	2 cut(s)	264, 405
TaaI	ACNGT	4 cut(s)	196, 385, 511, 1026
TaiI	ACGT	2 cut(s)	608, 1120
TaqI	TCGA	4 cut(s)	99, 234, 351, 479
TasI	AATT	1 cut(s)	722
TauI	GCSGC	6 cut(s)	44, 204, 378, 381, 1008, 1022
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	2 cut(s)	831, 1122
Tru9I	TTAA	2 cut(s)	831, 1122
TscAI	CASTG	1 cut(s)	1029
TseI	GCWGC	1 cut(s)	1030
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	1029
VpaK11BI	GGWCC	1 cut(s)	250
XceI	RCATGY	1 cut(s)	328
XmnI	GAANNNNTTC	3 cut(s)	301, 347, 452
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.