Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Reverse (-)

3438128 .. 3439069

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031256

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGATGTCGTTTTGTCGCCTCCTCCGCCGTGCATTTTCCACCGCCACCACTACCACCCAGCCCAAACCCACAACCGCCAAAAGCATTAGAGCCATCTTCGCCGACCTCGCCAATGCCAAGCCCTTCCGTGCGATCGAAGAAATCCTAGAGAACCAGAAGAAGTACGGTCGTACCCAGATTTCTCCGACTAGGGTTTCGCTGTCTGAATCATTTCCCTTTATGGAAAGGCCAACATGGGCCTGTGTGAACTCCAAGAAGTTTGATATGGTTGAGAAGATTTTCGGGGACGTGTCGGAAAAATTATCGATTGAGCCTGATTTGGTGTCGTACAATATTGTGATCAAGGCATTTTGCAAGATGGATTCGTTTAACTCAACGGTTTCGGTGATTGAGATGATGGACAAGAAGGGTGTGACGCCAAATATATGGGGTCAAATGGTGGAGAAGAATGCTGATCCTGATATTAGGAGCTATAAAGCCAAGTTGCTGGGGCTCGCTTTGGAGAAGAGGAGTCAAGAAGGGGGGCTCAATAAGTTGAAGAGTCAAGGAGGTGATGTGGAGTTTGCTTTTGAGCTCTGCAAGGACATTTTCTATCGACACCACCTTGTGAGTGTGGCACTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

209

Amino Acids

23.53

Weight (kDa)

9.23

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	105 - 142	7e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	25, 42, 75
AclWI	GGATC	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	416
AdeI	CACNNNGTG	1 cut(s)	607
AfaI	GTAC	3 cut(s)	164, 172, 329
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	538
AjiI	CACGTC	1 cut(s)	289
AluBI	AGCT	2 cut(s)	471, 574
AluI	AGCT	2 cut(s)	471, 574
Alw21I	GWGCWC	1 cut(s)	576
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	2 cut(s)	227, 237
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
Asp700I	GAANNNNTTC	2 cut(s)	210, 278
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	397, 563
BaeI	ACNNNNGTAYC	2 cut(s)	154, 187
BanII	GRGCYC	3 cut(s)	495, 528, 576
Bbv12I	GWGCWC	1 cut(s)	576
BccI	CCATC	3 cut(s)	101, 352, 391
BceAI	ACGGC	1 cut(s)	12
BclI	TGATCA	1 cut(s)	339
BfaI	CTAG	2 cut(s)	146, 189
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	237
Bsa29I	ATCGAT	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
BseCI	ATCGAT	1 cut(s)	305
BseRI	GAGGAG	2 cut(s)	11, 523
BseYI	CCCAGC	2 cut(s)	57, 487
Bsh1285I	CGRYCG	2 cut(s)	135, 169
BshFI	GGCC	2 cut(s)	229, 239
BshVI	ATCGAT	1 cut(s)	305
BsiEI	CGRYCG	2 cut(s)	135, 169
BsiHKAI	GWGCWC	1 cut(s)	576
BslFI	GGGAC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	229, 239
Bsp1286I	GDGCHC	3 cut(s)	495, 528, 576
Bsp143I	GATC	3 cut(s)	132, 339, 454
BspACI	CCGC	3 cut(s)	25, 42, 75
BspANI	GGCC	2 cut(s)	229, 239
BspDI	ATCGAT	1 cut(s)	305
BspPI	GGATC	1 cut(s)	449
BssMI	GATC	3 cut(s)	132, 339, 454
BssNI	GRCGYC	1 cut(s)	416
Bst4CI	ACNGT	3 cut(s)	167, 379, 621
Bst6I	CTCTTC	2 cut(s)	500, 533
BstACI	GRCGYC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	495
BstKTI	GATC	3 cut(s)	135, 342, 457
BstMBI	GATC	3 cut(s)	132, 339, 454
BstMCI	CGRYCG	2 cut(s)	135, 169
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 98, 107
BstXI	CCANNNNNNTGG	2 cut(s)	426, 487
Bsu15I	ATCGAT	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	229, 239
BsuTUI	ATCGAT	1 cut(s)	305
BtrI	CACGTC	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	617
Cac8I	GCNNGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	305
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	3 cut(s)	163, 171, 328
CviAII	CATG	1 cut(s)	234
CviQI	GTAC	3 cut(s)	163, 171, 328
DpnI	GATC	3 cut(s)	134, 341, 456
DpnII	GATC	3 cut(s)	132, 339, 454
DraIII	CACNNNGTG	1 cut(s)	607
Eam1104I	CTCTTC	2 cut(s)	500, 533
EarI	CTCTTC	2 cut(s)	500, 533
EciI	GGCGGA	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	574
Eco24I	GRGCYC	3 cut(s)	495, 528, 576
Eco53kI	GAGCTC	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	574
EcoT38I	GRGCYC	3 cut(s)	495, 528, 576
FaeI	CATG	1 cut(s)	237
FaiI	YATR	6 cut(s)	221, 235, 266, 425, 427, 474
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	339
FriOI	GRGCYC	3 cut(s)	495, 528, 576
FspBI	CTAG	2 cut(s)	146, 189
GsaI	CCCAGC	2 cut(s)	61, 491
HaeIII	GGCC	2 cut(s)	229, 239
HgaI	GACGC	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	416
Hin1II	CATG	1 cut(s)	237
HinfI	GANTC	4 cut(s)	206, 362, 511, 541
HphI	GGTGA	2 cut(s)	397, 563
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	3 cut(s)	186, 205, 295
Hpy188III	TCNNGA	2 cut(s)	458, 515
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	133, 400, 512
HpyCH4III	ACNGT	3 cut(s)	167, 379, 621
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	32, 354, 579
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 98, 107
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	416
Hsp92II	CATG	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	132, 339, 454
LmnI	GCTCC	1 cut(s)	468
LpnPI	CCDG	7 cut(s)	71, 167, 188, 253, 327, 471, 473
MaeI	CTAG	2 cut(s)	146, 189
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	134, 341, 456
MboI	GATC	3 cut(s)	132, 339, 454
MboII	GAAGA	7 cut(s)	88, 149, 169, 286, 457, 517, 550
MhlI	GDGCHC	3 cut(s)	495, 528, 576
MluCI	AATT	1 cut(s)	299
MlyI	GAGTC	2 cut(s)	520, 550
MmeI	TCCRAC	2 cut(s)	209, 273
MnlI	CCTC	5 cut(s)	29, 32, 116, 501, 542
MroXI	GAANNNNTTC	2 cut(s)	210, 278
MseI	TTAA	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	454
MwoI	GCNNNNNNNGC	3 cut(s)	24, 98, 107
NdeII	GATC	3 cut(s)	132, 339, 454
NlaIII	CATG	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	412
PctI	GAATGC	1 cut(s)	454
PdmI	GAANNNNTTC	2 cut(s)	210, 278
PfeI	GAWTC	2 cut(s)	206, 362
Ple19I	CGATCG	1 cut(s)	135
PleI	GAGTC	2 cut(s)	519, 549
PpsI	GAGTC	2 cut(s)	519, 549
Psp124BI	GAGCTC	1 cut(s)	576
PspFI	CCCAGC	2 cut(s)	57, 487
PspPI	GGNCC	1 cut(s)	237
PvuI	CGATCG	1 cut(s)	135
RsaI	GTAC	3 cut(s)	164, 172, 329
RsaNI	GTAC	3 cut(s)	163, 171, 328
SacI	GAGCTC	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	369
Sau3AI	GATC	3 cut(s)	132, 339, 454
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	2 cut(s)	520, 550
SduI	GDGCHC	3 cut(s)	495, 528, 576
SetI	ASST	6 cut(s)	108, 291, 473, 553, 576, 606
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	3 cut(s)	25, 42, 75
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	2 cut(s)	146, 189
SstI	GAGCTC	1 cut(s)	576
TaaI	ACNGT	3 cut(s)	167, 379, 621
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	3 cut(s)	135, 305, 595
TasI	AATT	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	206, 362
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	624
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	624
XmnI	GAANNNNTTC	2 cut(s)	210, 278
XspI	CTAG	2 cut(s)	146, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.