Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Reverse (-)

3047973 .. 3048888

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG041400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCAGCTTCAATGCCGTGATAAGGGATTTGTGAATGAGGGGAACTTGGATGAAGCTAAGCGGTGGTATGGTGAAATAGAGAAGAGTAGTTGTGCTCTGGATAAATGGACTTTTGAGACGCTTGTTCTCTTCGTTTGTGAGATGGGTGATGTGGAGTATGCTTTTGAGCTCTGCAAGGACATTTTCCAAAGGCGCCGCCTTGTGGGTGCAGCATTGTTGCAGCCTGTGGTGGATGGTCTGGTCAAGGCCTCCATGATTGAGGAGGCAAATGAACTAGTCAACCTTAGGAACACTAATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

100

Amino Acids

11.45

Weight (kDa)

4.71

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	192
AciI	CCGC	2 cut(s)	61, 196
AcyI	GRCGYC	1 cut(s)	193
AfiI	CCNNNNNNNGG	2 cut(s)	22, 202
AgsI	TTSAA	1 cut(s)	11
AhlI	ACTAGT	1 cut(s)	274
AloI	GAACNNNNNNTCC	1 cut(s)	281
AluBI	AGCT	3 cut(s)	7, 56, 169
AluI	AGCT	3 cut(s)	7, 56, 169
Alw21I	GWGCWC	2 cut(s)	97, 171
Alw26I	GTCTC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	4, 209, 220
AspLEI	GCGC	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	83, 158
AxyI	CCTNAGG	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	97, 171
BbvI	GCAGC	3 cut(s)	16, 221, 232
BccI	CCATC	2 cut(s)	136, 227
BcoDI	GTCTC	1 cut(s)	110
BcuI	ACTAGT	1 cut(s)	274
BfaI	CTAG	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	196
BisI	GCNGC	4 cut(s)	5, 196, 210, 221
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	4 cut(s)	6, 197, 211, 222
BmiI	GGNNCC	1 cut(s)	194
Bpu1102I	GCTNAGC	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 202
Bse21I	CCTNAGG	1 cut(s)	284
BseGI	GGATG	2 cut(s)	55, 238
BseLI	CCNNNNNNNGG	2 cut(s)	22, 202
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	3 cut(s)	16, 221, 232
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	97, 171
BslI	CCNNNNNNNGG	2 cut(s)	22, 202
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	97, 171
Bsp1720I	GCTNAGC	1 cut(s)	57
BspACI	CCGC	2 cut(s)	61, 196
BspANI	GGCC	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	192
BssNI	GRCGYC	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	77, 134
BstACI	GRCGYC	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	57, 284
BstF5I	GGATG	2 cut(s)	55, 238
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstMAI	GTCTC	1 cut(s)	110
BstV1I	GCAGC	3 cut(s)	16, 221, 232
Bsu36I	CCTNAGG	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	55, 238
CfoI	GCGC	1 cut(s)	195
CseI	GACGC	1 cut(s)	127
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	5 cut(s)	7, 56, 169, 223, 248
CviKI_1	RGCY	5 cut(s)	7, 56, 169, 223, 248
DdeI	CTNAG	2 cut(s)	57, 284
DinI	GGCGCC	1 cut(s)	194
Eam1104I	CTCTTC	2 cut(s)	77, 134
EarI	CTCTTC	2 cut(s)	77, 134
Ecl136II	GAGCTC	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	169
Eco81I	CCTNAGG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	171
EgeI	GGCGCC	1 cut(s)	194
EheI	GGCGCC	1 cut(s)	194
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	1 cut(s)	256
FaiI	YATR	3 cut(s)	69, 159, 254
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	5, 196, 210, 221
FokI	GGATG	2 cut(s)	62, 245
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	4 cut(s)	5, 196, 210, 221
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	4 cut(s)	5, 196, 210, 221
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	248
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HphI	GGTGA	2 cut(s)	83, 158
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	280
HpyCH4V	TGCA	4 cut(s)	4, 174, 209, 220
HpyF3I	CTNAG	2 cut(s)	57, 284
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	193
KasI	GGCGCC	1 cut(s)	192
LpnPI	CCDG	3 cut(s)	83, 224, 237
Lsp1109I	GCAGC	3 cut(s)	16, 221, 232
MaeI	CTAG	1 cut(s)	275
MboII	GAAGA	2 cut(s)	94, 121
MhlI	GDGCHC	2 cut(s)	97, 171
MluCI	AATT	1 cut(s)	295
Mly113I	GGCGCC	1 cut(s)	193
MnlI	CCTC	4 cut(s)	31, 253, 256, 259
NarI	GGCGCC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	6, 197, 211, 222
PluTI	GGCGCC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	171
SatI	GCNGC	4 cut(s)	5, 196, 210, 221
SduI	GDGCHC	2 cut(s)	97, 171
SetI	ASST	4 cut(s)	9, 58, 171, 285
SfoI	GGCGCC	1 cut(s)	194
SpeI	ACTAGT	1 cut(s)	274
Sse9I	AATT	1 cut(s)	295
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	2 cut(s)	61, 196
SspDI	GGCGCC	1 cut(s)	192
SspMI	CTAG	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	171
StuI	AGGCCT	1 cut(s)	248
TasI	AATT	1 cut(s)	295
TauI	GCSGC	1 cut(s)	198
TseI	GCWGC	3 cut(s)	4, 209, 220
TspDTI	ATGAA	2 cut(s)	66, 285
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.