Prupe.4G030500_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
1422491 .. 1423669
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G030500.1

Sequence Viewer

Length: 1146 bp
ATGTCTTTCTCTCGCATCCTCCAGCGCGCCTTCTGCACCAGCACCCAACCCAACCCCACTACCAGGCAGAGCATTAAGGCCATCTCCACCGACCTCTACAAAGAGCGCAACCTCAAACGCCTCGTCGAGAAGTTCAAGAAGTCCTCTGAGATCTATCGCTTCCGAACCAAAACCTCCATTTACGAGGATGCCGTTCGCCGCCTCGCCGCCGCAAAACGTTTCAAGTGGATCGAAGAGATCCTAGAGGACCAGAAGAAGTACCCGGACTTCTCCAATGAGGGCTTCGCTGCCCGACTCGTTTCGCTATACGGTAAAGCCGGTATGCTTGAAAATGCCCAGAAGGTGTTCGACGAAATGCCTGATAAAAACTGCGAGCGCACGGTGTTGTCATTTAACGCCCTCTTGGCGGCTTGCATTAACTCCAAAAAATTCGACAAGGTTGATGAGGTTTTTAGAGGGGTCTCGCAGAAGTTGTCAATTGAACCGGATGTGGTGTCCTATAATACTATGATCAAGGCGTTTTGTGAGATGGGTTCGTTGGATTCCGCTGTTTCGATGCTGGGTGAGATGGAGAAGAAGGCCATGAAGCTGGATGCCATCACGTACAACACGATTTTGAATGGTTTATATGCACATAGTCGGTTTTTGGATGCTGAGAAGCAATGGGGTCGAATGGTGGAGAAGAATGTTGTTCCTGATGTTAGGTCTTACAATGCCAAATTGCTGGGGTTGGCTTCAGAGAAGAGAACTGAAGAAGGGGTTGAGTTATTTGAGGAATTGAAGAACAAGGGAATAAAACCTGATGTGTTTAGCTTCAATGCCTTGATCAAGGGCTTTGTTGATGAGGGAAAATTGGAAAAGGCTAAGAAGTGGTACCATGAAATGGGGAAGAGCAATTGTGCTCCGCAGAAATGGACTTTCCAGACGCTTGTTCCCTTTGTTTGTGAGAAGGGTGATTTGGACTTTGCCAGTGAGCTCGGGGAGGAAATTTTCAAAAGGCGCCTTCTCGTGGATGCAGCGTTGTTGCAGATTGTGGTGGATGGGCTGGTTAAGGCCTCTAGGATTGAGGAGGCAAATAAGCTTGTGAAACTTGGGAAGTCAAATAGTTACCGGCGTTATAATCTCAAGTTGCCTACAGAGGAATAA

Protein Analysis

382

Amino Acids

43.63

Weight (kDa)

9.13

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1119
Acc65I GGTACC 1 cut(s) 873
AccB1I GGYRCC 2 cut(s) 873, 999
AccB7I CCANNNNNTGG 1 cut(s) 883
AccII CGCG 1 cut(s) 27
AciI CCGC 6 cut(s) 199, 207, 210, 407, 546, 905
AclI AACGTT 1 cut(s) 217
AclWI GGATC 2 cut(s) 232, 236
AcsI RAATTY 2 cut(s) 428, 987
AcuI CTGAAG 2 cut(s) 720, 771
AcyI GRCGYC 1 cut(s) 1000
AfaI GTAC 3 cut(s) 260, 605, 875
AfiI CCNNNNNNNGG 4 cut(s) 63, 406, 883, 1009
AgsI TTSAA 8 cut(s) 136, 223, 329, 482, 619, 781, 817, 994
AjnI CCWGG 1 cut(s) 62
AjuI GAANNNNNNNTTGG 4 cut(s) 266, 298, 941, 973
AluBI AGCT 4 cut(s) 589, 813, 976, 1081
AluI AGCT 4 cut(s) 589, 813, 976, 1081
Alw21I GWGCWC 2 cut(s) 904, 978
Alw26I GTCTC 1 cut(s) 466
AlwI GGATC 2 cut(s) 232, 236
Ama87I CYCGRG 1 cut(s) 977
AoxI GGCC 3 cut(s) 78, 579, 1053
ApeKI GCWGC 2 cut(s) 287, 1016
ApoI RAATTY 2 cut(s) 428, 987
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
Asp700I GAANNNNTTC 1 cut(s) 344
Asp718I GGTACC 1 cut(s) 873
AspLEI GCGC 5 cut(s) 27, 29, 108, 378, 1002
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 575, 965
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 1 cut(s) 247
BanI GGYRCC 2 cut(s) 873, 999
BanII GRGCYC 1 cut(s) 978
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
BauI CACGAG 1 cut(s) 1007
Bbv12I GWGCWC 2 cut(s) 904, 978
BbvI GCAGC 2 cut(s) 274, 1028
BccI CCATC 5 cut(s) 89, 523, 562, 605, 1034
BceAI ACGGC 1 cut(s) 176
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 1 cut(s) 64
BclI TGATCA 2 cut(s) 510, 825
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 2 cut(s) 242, 1059
BfmI CTRYAG 1 cut(s) 1134
BfoI RGCGCY 1 cut(s) 1003
BglI GCCNNNNNGGC 1 cut(s) 404
BglII AGATCT 1 cut(s) 150
BisI GCNGC 6 cut(s) 199, 207, 210, 288, 408, 1017
BlsI GCNGC 6 cut(s) 200, 208, 211, 289, 409, 1018
Bme1390I CCNGG 2 cut(s) 64, 263
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 977
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 875, 1001
BmrFI CCNGG 2 cut(s) 64, 263
BmsI GCATC 6 cut(s) 24, 178, 546, 583, 640, 1003
BpmI CTGGAG 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 1109
BpuMI CCSGG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 603
BsaHI GRCGYC 1 cut(s) 1000
BsaI GGTCTC 1 cut(s) 466
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 406, 883, 1009
Bse118I RCCGGY 2 cut(s) 317, 1110
Bse1I ACTGG 1 cut(s) 969
Bse3DI GCAATG 1 cut(s) 668
BseBI CCWGG 1 cut(s) 64
BseGI GGATG 7 cut(s) 15, 193, 493, 598, 655, 1018, 1045
BseLI CCNNNNNNNGG 4 cut(s) 63, 406, 883, 1009
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 2 cut(s) 138, 645
BseNI ACTGG 1 cut(s) 969
BsePI GCGCGC 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 1082
BseXI GCAGC 2 cut(s) 274, 1028
BseYI CCCAGC 2 cut(s) 559, 724
BsgI GTGCAG 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 3 cut(s) 80, 581, 1055
BshNI GGYRCC 2 cut(s) 873, 999
BsiHKAI GWGCWC 2 cut(s) 904, 978
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 4 cut(s) 263, 318, 485, 1111
BslI CCNNNNNNNGG 4 cut(s) 63, 406, 883, 1009
BsmAI GTCTC 1 cut(s) 466
BsnI GGCC 3 cut(s) 80, 581, 1055
Bso31I GGTCTC 1 cut(s) 466
BsoBI CYCGRG 1 cut(s) 977
Bsp1286I GDGCHC 2 cut(s) 904, 978
Bsp143I GATC 5 cut(s) 150, 228, 237, 510, 825
BspACI CCGC 6 cut(s) 199, 207, 210, 407, 546, 905
BspANI GGCC 3 cut(s) 80, 581, 1055
BspCNI CTCAG 2 cut(s) 139, 646
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 2 cut(s) 875, 1001
BspPI GGATC 2 cut(s) 232, 236
BspQI GCTCTTC 1 cut(s) 884
BspT107I GGYRCC 2 cut(s) 873, 999
BspTNI GGTCTC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 668
BsrFI RCCGGY 2 cut(s) 317, 1110
BsrI ACTGG 1 cut(s) 969
BssAI RCCGGY 2 cut(s) 317, 1110
BssHII GCGCGC 1 cut(s) 25
BssMI GATC 5 cut(s) 150, 228, 237, 510, 825
BssNI GRCGYC 1 cut(s) 1000
BssSI CACGAG 1 cut(s) 1007
Bst2BI CACGAG 1 cut(s) 1007
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 311, 382
Bst6I CTCTTC 3 cut(s) 228, 737, 884
BstACI GRCGYC 1 cut(s) 1000
BstBAI YACGTR 1 cut(s) 603
BstC8I GCNNGC 3 cut(s) 27, 374, 412
BstDEI CTNAG 3 cut(s) 147, 654, 864
BstF5I GGATG 7 cut(s) 15, 193, 493, 598, 655, 1018, 1045
BstFNI CGCG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 1003
BstHHI GCGC 5 cut(s) 27, 29, 108, 378, 1002
BstKTI GATC 5 cut(s) 153, 231, 240, 513, 828
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 5 cut(s) 150, 228, 237, 510, 825
BstMWI GCNNNNNNNGC 2 cut(s) 33, 404
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 62, 261
BstSFI CTRYAG 1 cut(s) 1134
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 274, 1028
BstX2I RGATCY 2 cut(s) 150, 237
BstXI CCANNNNNNTGG 2 cut(s) 589, 724
BstYI RGATCY 2 cut(s) 150, 237
BsuRI GGCC 3 cut(s) 80, 581, 1055
BtsCI GGATG 7 cut(s) 15, 193, 493, 598, 655, 1018, 1045
BtsIMutI CAGTG 1 cut(s) 976
Cac8I GCNNGC 3 cut(s) 27, 374, 412
CfoI GCGC 5 cut(s) 27, 29, 108, 378, 1002
Cfr10I RCCGGY 2 cut(s) 317, 1110
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 1 cut(s) 934
Csp6I GTAC 3 cut(s) 259, 604, 874
CviAII CATG 2 cut(s) 583, 878
CviQI GTAC 3 cut(s) 259, 604, 874
DdeI CTNAG 3 cut(s) 147, 654, 864
DinI GGCGCC 1 cut(s) 1001
DpnI GATC 5 cut(s) 152, 230, 239, 512, 827
DpnII GATC 5 cut(s) 150, 228, 237, 510, 825
Eam1104I CTCTTC 3 cut(s) 228, 737, 884
EarI CTCTTC 3 cut(s) 228, 737, 884
Ecl136II GAGCTC 1 cut(s) 976
Eco147I AGGCCT 1 cut(s) 1055
Eco24I GRGCYC 1 cut(s) 978
Eco31I GGTCTC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 976
Eco57I CTGAAG 2 cut(s) 720, 771
Eco88I CYCGRG 1 cut(s) 977
EcoICRI GAGCTC 1 cut(s) 976
EcoRII CCWGG 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 978
EgeI GGCGCC 1 cut(s) 1001
EheI GGCGCC 1 cut(s) 1001
FaeI CATG 2 cut(s) 586, 881
FatI CATG 2 cut(s) 582, 877
FbaI TGATCA 2 cut(s) 510, 825
Fnu4HI GCNGC 6 cut(s) 199, 207, 210, 288, 408, 1017
FokI GGATG 7 cut(s) 2, 200, 500, 605, 662, 1025, 1052
FriOI GRGCYC 1 cut(s) 978
Fsp4HI GCNGC 6 cut(s) 199, 207, 210, 288, 408, 1017
FspBI CTAG 2 cut(s) 242, 1059
GlaI GCGC 5 cut(s) 26, 28, 107, 377, 1001
GluI GCNGC 6 cut(s) 199, 207, 210, 288, 408, 1017
GsaI CCCAGC 2 cut(s) 563, 728
GsuI CTGGAG 1 cut(s) 5
HaeII RGCGCY 1 cut(s) 1003
HaeIII GGCC 3 cut(s) 80, 581, 1055
HapII CCGG 4 cut(s) 263, 318, 485, 1111
HgaI GACGC 1 cut(s) 934
HhaI GCGC 5 cut(s) 27, 29, 108, 378, 1002
Hin1I GRCGYC 1 cut(s) 1000
Hin1II CATG 2 cut(s) 586, 881
Hin6I GCGC 5 cut(s) 25, 27, 106, 376, 1000
HinP1I GCGC 5 cut(s) 25, 27, 106, 376, 1000
HindIII AAGCTT 1 cut(s) 1079
HinfI GANTC 2 cut(s) 294, 542
HpaII CCGG 4 cut(s) 263, 318, 485, 1111
HphI GGTGA 2 cut(s) 575, 965
Hpy188I TCNGA 3 cut(s) 148, 164, 739
Hpy188III TCNNGA 4 cut(s) 127, 136, 695, 922
Hpy99I CGWCG 2 cut(s) 128, 353
HpyAV CCTTC 6 cut(s) 40, 334, 571, 749, 943, 1013
HpyCH4III ACNGT 2 cut(s) 311, 382
HpyCH4IV ACGT 2 cut(s) 217, 602
HpyCH4V TGCA 5 cut(s) 36, 414, 632, 1016, 1027
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 404
HpyF3I CTNAG 3 cut(s) 147, 654, 864
HpySE526I ACGT 2 cut(s) 217, 602
Hsp92I GRCGYC 1 cut(s) 1000
Hsp92II CATG 2 cut(s) 586, 881
HspAI GCGC 5 cut(s) 25, 27, 106, 376, 1000
KasI GGCGCC 1 cut(s) 999
KpnI GGTACC 1 cut(s) 877
Ksp22I TGATCA 2 cut(s) 510, 825
Kzo9I GATC 5 cut(s) 150, 228, 237, 510, 825
LguI GCTCTTC 1 cut(s) 884
LmnI GCTCC 1 cut(s) 907
Lsp1109I GCAGC 2 cut(s) 274, 1028
LweI GCATC 6 cut(s) 24, 178, 546, 583, 640, 1003
MaeI CTAG 2 cut(s) 242, 1059
MaeII ACGT 2 cut(s) 217, 602
MaeIII GTNAC 1 cut(s) 1106
MalI GATC 5 cut(s) 152, 230, 239, 512, 827
MboI GATC 5 cut(s) 150, 228, 237, 510, 825
MboII GAAGA 8 cut(s) 245, 265, 586, 694, 754, 764, 793, 901
MfeI CAATTG 2 cut(s) 477, 895
MflI RGATCY 2 cut(s) 150, 237
MhlI GDGCHC 2 cut(s) 904, 978
MluCI AATT 7 cut(s) 428, 477, 719, 776, 851, 895, 987
Mly113I GGCGCC 1 cut(s) 1000
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 1 cut(s) 519
MroXI GAANNNNTTC 1 cut(s) 344
MseI TTAA 4 cut(s) 75, 393, 417, 1050
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 4 cut(s) 263, 318, 485, 1111
MspR9I CCNGG 2 cut(s) 64, 263
MunI CAATTG 2 cut(s) 477, 895
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 33, 404
NarI GGCGCC 1 cut(s) 1000
NciI CCSGG 1 cut(s) 263
NdeII GATC 5 cut(s) 150, 228, 237, 510, 825
NlaIII CATG 2 cut(s) 586, 881
NlaIV GGNNCC 2 cut(s) 875, 1001
PauI GCGCGC 1 cut(s) 25
PceI AGGCCT 1 cut(s) 1055
PciSI GCTCTTC 1 cut(s) 884
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 608
PdmI GAANNNNTTC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 542
PflMI CCANNNNNTGG 1 cut(s) 883
PkrI GCNGC 6 cut(s) 200, 208, 211, 289, 409, 1018
PleI GAGTC 1 cut(s) 288
PluTI GGCGCC 1 cut(s) 1003
PpsI GAGTC 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 603
PsiI TTATAA 1 cut(s) 1119
Psp124BI GAGCTC 1 cut(s) 978
Psp1406I AACGTT 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 62
PspFI CCCAGC 2 cut(s) 559, 724
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 875, 1001
PspPI GGNCC 1 cut(s) 247
PsuI RGATCY 2 cut(s) 150, 237
PteI GCGCGC 1 cut(s) 25
RsaI GTAC 3 cut(s) 260, 605, 875
RsaNI GTAC 3 cut(s) 259, 604, 874
SacI GAGCTC 1 cut(s) 978
SapI GCTCTTC 1 cut(s) 884
SaqAI TTAA 4 cut(s) 75, 393, 417, 1050
SatI GCNGC 6 cut(s) 199, 207, 210, 288, 408, 1017
Sau3AI GATC 5 cut(s) 150, 228, 237, 510, 825
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 64, 263
SduI GDGCHC 2 cut(s) 904, 978
SfaNI GCATC 6 cut(s) 24, 178, 546, 583, 640, 1003
SfcI CTRYAG 1 cut(s) 1134
SfoI GGCGCC 1 cut(s) 1001
SinI GGWCC 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 1124
SmoI CTYRAG 1 cut(s) 1124
Sse9I AATT 7 cut(s) 428, 477, 719, 776, 851, 895, 987
SseBI AGGCCT 1 cut(s) 1055
SsiI CCGC 6 cut(s) 199, 207, 210, 407, 546, 905
SspDI GGCGCC 1 cut(s) 999
SspMI CTAG 2 cut(s) 242, 1059
SstI GAGCTC 1 cut(s) 978
StuI AGGCCT 1 cut(s) 1055
StyD4I CCNGG 2 cut(s) 62, 261
TaaI ACNGT 2 cut(s) 311, 382
TaiI ACGT 2 cut(s) 220, 605
TaqI TCGA 6 cut(s) 126, 231, 348, 432, 554, 670
TasI AATT 7 cut(s) 428, 477, 719, 776, 851, 895, 987
TauI GCSGC 4 cut(s) 201, 209, 212, 410
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 4 cut(s) 75, 393, 417, 1050
Tru9I TTAA 4 cut(s) 75, 393, 417, 1050
TscAI CASTG 1 cut(s) 976
TseI GCWGC 2 cut(s) 287, 1016
TspDTI ATGAA 2 cut(s) 599, 894
TspRI CASTG 1 cut(s) 976
Van91I CCANNNNNTGG 1 cut(s) 883
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 2 cut(s) 428, 987
XmnI GAANNNNTTC 1 cut(s) 344
XspI CTAG 2 cut(s) 242, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.