AT3G16490

IQ-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002379
Physical Location & Seq
Reverse (-)
5603848 .. 5605765
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16490.1

Sequence Viewer

Length: 1170 bp
ATGGGAAGAGCTGCGAGATGGTTCAAGGGTATTTTTGGTATGAAGAAGAGCAAAGAGAAAGAGAACTGTGTTTCCGGCGACGTTGGAGGTGAAGCCGGTGGTTCTAACATTCACCGGAAAGTTCTCCAAGCTGACTCCGTCTGGCTCAGAACTTACCTTGCGGAAACAGACAAAGAACAGAACAAACACGCGATTGCGGTTGCTGCTGCTACAGCCGCGGCTGCTGACGCAGCGGTTGCAGCGGCTCAAGCTGCTGTGGCGGTGGTCAGGTTAACAAGTAACGGAAGAAGCGGAGGATATTCCGGGAACGCAATGGAGCGGTGGGCCGCAGTGAAAATTCAATCAGTCTTCAAGGGCTATTTGGCGAGAAAAGCGTTACGAGCTTTGAAAGGTTTAGTGAAGCTACAAGCTTTGGTAAGAGGATACTTAGTCCGCAAACGCGCCGCCGAAACGCTGCATAGCATGCAAGCTCTCATTAGAGCTCAAACCAGCGTCCGATCGCAACGCATCAACCGCAACAACATGTTTCATCCTCGACACTCACTTGAGAGGTTGGATGATTCAAGAAGTGAAATCCATAGCAAGAGAATATCAATCTCTGTAGAGAAACAGAGTAATCACAACAACAATGCGTACGATGAGACCAGTCCCAAGATTGTGGAGATTGATACTTACAAGACGAAATCAAGATCAAAGAGAATGAATGTGGCTGTATCCGAATGTGGAGATGATTTCATCTATCAAGCCAAAGATTTCGAATGGAGTTTTCCGGGAGAGAAATGCAAGTTTCCTACGGCTCAAAACACGCCGAGATTCTCTTCATCAATGGCTAATAATAACTATTACTACACGCCCCCATCGCCGGCGAAAAGTGTTTGCAGAGACGCTTGTTTTAGGCCAAGTTATCCTGGTTTGATGACACCTAGCTATATGGCTAATACGCAGTCGTTTAAAGCCAAGGTACGTTCGCATAGTGCACCGAGACAACGTCCTGATAGAAAAAGATTGTCACTTGATGAGATTATGGCGGCTAGAAGTAGCGTTAGTGGTGTGAGGATGGTGCAACCACAACCACAACCGCAAACGCAAACGCAGCAACAGAAACGCTCTCCTTGTTCGTATGATCATCAGTTTCGTCAGAACGAGACTGATTTTAGATTCTATAATTAG

Protein Analysis

389

Amino Acids

43.66

Weight (kDa)

10.08

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 266 - 353 1.5e-13 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 319
AccII CGCG 3 cut(s) 191, 218, 441
AcsI RAATTY 1 cut(s) 336
AfaI GTAC 2 cut(s) 635, 963
AfiI CCNNNNNNNGG 1 cut(s) 862
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 5 cut(s) 25, 341, 352, 388, 564
AjnI CCWGG 1 cut(s) 907
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 9 cut(s) 11, 131, 251, 383, 403, 410, 470, 482, 927
AluI AGCT 9 cut(s) 11, 131, 251, 383, 403, 410, 470, 482, 927
Alw21I GWGCWC 2 cut(s) 484, 979
Alw26I GTCTC 4 cut(s) 635, 876, 976, 1139
Alw44I GTGCAC 1 cut(s) 975
AoxI GGCC 2 cut(s) 324, 896
ApaLI GTGCAC 1 cut(s) 975
ApeKI GCWGC 9 cut(s) 11, 203, 206, 221, 230, 239, 251, 454, 1093
ApoI RAATTY 1 cut(s) 336
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 324
AsuC2I CCSGG 2 cut(s) 304, 771
AsuHPI GGTGA 2 cut(s) 101, 104
AsuII TTCGAA 1 cut(s) 756
BaeGI GKGCMC 1 cut(s) 979
BanII GRGCYC 1 cut(s) 484
BbsI GAAGAC 1 cut(s) 340
Bbv12I GWGCWC 2 cut(s) 484, 979
BbvI GCAGC 8 cut(s) 190, 193, 208, 238, 242, 251, 441, 1105
BccI CCATC 3 cut(s) 12, 865, 1051
BceAI ACGGC 1 cut(s) 810
BciT130I CCWGG 1 cut(s) 909
BciVI GTATCC 2 cut(s) 416, 724
BclI TGATCA 1 cut(s) 1123
BcnI CCSGG 2 cut(s) 304, 771
BcoDI GTCTC 4 cut(s) 635, 876, 976, 1139
BfaI CTAG 2 cut(s) 924, 1032
BfmI CTRYAG 2 cut(s) 210, 600
BfuI GTATCC 2 cut(s) 416, 724
Bme1390I CCNGG 3 cut(s) 304, 771, 909
BmgT120I GGNCC 1 cut(s) 324
BmrFI CCNGG 3 cut(s) 304, 771, 909
BmsI GCATC 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 340
Bpu14I TTCGAA 1 cut(s) 756
BpuEI CTTGAG 2 cut(s) 231, 566
BpuMI CCSGG 2 cut(s) 304, 771
BsaI GGTCTC 1 cut(s) 635
BsaJI CCNNGG 2 cut(s) 216, 957
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 862
Bse118I RCCGGY 2 cut(s) 95, 862
Bse1I ACTGG 1 cut(s) 645
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 909
BseDI CCNNGG 2 cut(s) 216, 957
BseGI GGATG 3 cut(s) 529, 562, 1062
BseLI CCNNNNNNNGG 1 cut(s) 862
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 645
BseSI GKGCMC 1 cut(s) 979
BseXI GCAGC 8 cut(s) 190, 193, 208, 238, 242, 251, 441, 1105
Bsh1236I CGCG 3 cut(s) 191, 218, 441
Bsh1285I CGRYCG 1 cut(s) 500
BshFI GGCC 2 cut(s) 326, 898
BsiEI CGRYCG 1 cut(s) 500
BsiHKAI GWGCWC 2 cut(s) 484, 979
BsiSI CCGG 6 cut(s) 75, 96, 115, 303, 770, 863
BsiWI CGTACG 1 cut(s) 633
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 1 cut(s) 862
BsmAI GTCTC 4 cut(s) 635, 876, 976, 1139
BsmBI CGTCTC 1 cut(s) 876
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 2 cut(s) 326, 898
Bso31I GGTCTC 1 cut(s) 635
Bsp119I TTCGAA 1 cut(s) 756
Bsp1286I GDGCHC 2 cut(s) 484, 979
Bsp143I GATC 3 cut(s) 497, 689, 1123
BspANI GGCC 2 cut(s) 326, 898
BspCNI CTCAG 1 cut(s) 159
BspFNI CGCG 3 cut(s) 191, 218, 441
BspQI GCTCTTC 1 cut(s) 41
BspT104I TTCGAA 1 cut(s) 756
BspTNI GGTCTC 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 2 cut(s) 95, 862
BsrI ACTGG 1 cut(s) 645
BssAI RCCGGY 2 cut(s) 95, 862
BssECI CCNNGG 2 cut(s) 216, 957
BssMI GATC 3 cut(s) 497, 689, 1123
BssT1I CCWWGG 1 cut(s) 957
Bst2UI CCWGG 1 cut(s) 909
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 2 cut(s) 41, 823
BstAPI GCANNNNNTGC 2 cut(s) 236, 463
BstBI TTCGAA 1 cut(s) 756
BstC8I GCNNGC 3 cut(s) 464, 468, 864
BstDEI CTNAG 2 cut(s) 146, 427
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 3 cut(s) 529, 562, 1062
BstFNI CGCG 3 cut(s) 191, 218, 441
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 3 cut(s) 500, 692, 1126
BstMAI GTCTC 4 cut(s) 635, 876, 976, 1139
BstMBI GATC 3 cut(s) 497, 689, 1123
BstMCI CGRYCG 1 cut(s) 500
BstNI CCWGG 1 cut(s) 909
BstNSI RCATGY 2 cut(s) 466, 526
BstSCI CCNGG 3 cut(s) 302, 769, 907
BstSFI CTRYAG 2 cut(s) 210, 600
BstSLI GKGCMC 1 cut(s) 979
BstUI CGCG 3 cut(s) 191, 218, 441
BstV1I GCAGC 8 cut(s) 190, 193, 208, 238, 242, 251, 441, 1105
BstV2I GAAGAC 1 cut(s) 340
BstXI CCANNNNNNTGG 1 cut(s) 658
BsuI GTATCC 2 cut(s) 416, 724
BsuRI GGCC 2 cut(s) 326, 898
BtgI CCRYGG 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 843
BtsCI GGATG 3 cut(s) 529, 562, 1062
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 3 cut(s) 464, 468, 864
CfoI GCGC 1 cut(s) 443
Cfr10I RCCGGY 2 cut(s) 95, 862
Cfr13I GGNCC 1 cut(s) 324
Cfr42I CCGCGG 1 cut(s) 219
CseI GACGC 3 cut(s) 236, 481, 893
Csp6I GTAC 2 cut(s) 634, 962
CviAII CATG 2 cut(s) 463, 523
CviQI GTAC 2 cut(s) 634, 962
DdeI CTNAG 2 cut(s) 146, 427
DpnI GATC 3 cut(s) 499, 691, 1125
DpnII GATC 3 cut(s) 497, 689, 1123
DraI TTTAAA 1 cut(s) 952
Eam1104I CTCTTC 2 cut(s) 41, 823
EarI CTCTTC 2 cut(s) 41, 823
Ecl136II GAGCTC 1 cut(s) 482
Eco130I CCWWGG 1 cut(s) 957
Eco24I GRGCYC 1 cut(s) 484
Eco31I GGTCTC 1 cut(s) 635
Eco53kI GAGCTC 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 907
EcoT14I CCWWGG 1 cut(s) 957
EcoT38I GRGCYC 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 957
Esp3I CGTCTC 1 cut(s) 876
FaeI CATG 2 cut(s) 466, 526
FaqI GGGAC 1 cut(s) 633
FatI CATG 2 cut(s) 462, 522
FbaI TGATCA 1 cut(s) 1123
FokI GGATG 3 cut(s) 516, 569, 1069
FriOI GRGCYC 1 cut(s) 484
FspBI CTAG 2 cut(s) 924, 1032
GlaI GCGC 1 cut(s) 442
HaeIII GGCC 2 cut(s) 326, 898
HapII CCGG 6 cut(s) 75, 96, 115, 303, 770, 863
HgaI GACGC 3 cut(s) 236, 481, 893
HhaI GCGC 1 cut(s) 443
Hin1II CATG 2 cut(s) 466, 526
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 4 cut(s) 134, 560, 813, 1158
HpaI GTTAAC 1 cut(s) 273
HpaII CCGG 6 cut(s) 75, 96, 115, 303, 770, 863
HphI GGTGA 2 cut(s) 101, 104
Hpy166II GTNNAC 2 cut(s) 273, 977
Hpy188I TCNGA 4 cut(s) 149, 497, 718, 1140
Hpy188III TCNNGA 3 cut(s) 564, 687, 992
Hpy8I GTNNAC 2 cut(s) 273, 977
Hpy99I CGWCG 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 3 cut(s) 81, 964, 988
HpyCH4V TGCA 7 cut(s) 239, 457, 466, 783, 879, 977, 1063
HpyF3I CTNAG 2 cut(s) 146, 427
HpySE526I ACGT 3 cut(s) 81, 964, 988
Hsp92II CATG 2 cut(s) 466, 526
HspAI GCGC 1 cut(s) 441
KroI GCCGGC 1 cut(s) 862
KroNI GCCGGC 1 cut(s) 864
Ksp22I TGATCA 1 cut(s) 1123
KspAI GTTAAC 1 cut(s) 273
KspI CCGCGG 1 cut(s) 219
Kzo9I GATC 3 cut(s) 497, 689, 1123
LguI GCTCTTC 1 cut(s) 41
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 8 cut(s) 190, 193, 208, 238, 242, 251, 441, 1105
LweI GCATC 1 cut(s) 516
MaeI CTAG 2 cut(s) 924, 1032
MaeII ACGT 3 cut(s) 81, 964, 988
MaeIII GTNAC 3 cut(s) 278, 375, 1008
MalI GATC 3 cut(s) 499, 691, 1125
MbiI CCGCTC 1 cut(s) 319
MboI GATC 3 cut(s) 497, 689, 1123
MboII GAAGA 6 cut(s) 18, 55, 58, 297, 340, 810
MhlI GDGCHC 2 cut(s) 484, 979
MluCI AATT 2 cut(s) 336, 1165
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 2 cut(s) 64, 534
MnlI CCTC 6 cut(s) 80, 287, 413, 543, 543, 1047
MreI CGCCGGCG 1 cut(s) 862
MroNI GCCGGC 1 cut(s) 862
MseI TTAA 2 cut(s) 272, 951
MspA1I CMGCKG 3 cut(s) 218, 233, 242
MspI CCGG 6 cut(s) 75, 96, 115, 303, 770, 863
MspR9I CCNGG 3 cut(s) 304, 771, 909
MvaI CCWGG 1 cut(s) 909
MvnI CGCG 3 cut(s) 191, 218, 441
NaeI GCCGGC 1 cut(s) 864
NciI CCSGG 2 cut(s) 304, 771
NdeII GATC 3 cut(s) 497, 689, 1123
NgoMIV GCCGGC 1 cut(s) 862
NlaIII CATG 2 cut(s) 466, 526
NmeAIII GCCGAG 1 cut(s) 834
NmuCI GTSAC 1 cut(s) 1008
NspI RCATGY 2 cut(s) 466, 526
NspV TTCGAA 1 cut(s) 756
PaeI GCATGC 1 cut(s) 466
PciI ACATGT 1 cut(s) 522
PciSI GCTCTTC 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 864
PfeI GAWTC 3 cut(s) 560, 813, 1158
Pfl23II CGTACG 1 cut(s) 633
PflFI GACNNNGTC 2 cut(s) 137, 987
PfoI TCCNGGA 2 cut(s) 302, 769
Ple19I CGATCG 1 cut(s) 500
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PscI ACATGT 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 907
PspGI CCWGG 1 cut(s) 907
PspLI CGTACG 1 cut(s) 633
PspPI GGNCC 1 cut(s) 324
PsyI GACNNNGTC 2 cut(s) 137, 987
PvuI CGATCG 1 cut(s) 500
RsaI GTAC 2 cut(s) 635, 963
RsaNI GTAC 2 cut(s) 634, 962
SacI GAGCTC 1 cut(s) 484
SacII CCGCGG 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 272, 951
Sau3AI GATC 3 cut(s) 497, 689, 1123
Sau96I GGNCC 1 cut(s) 324
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 3 cut(s) 304, 771, 909
SduI GDGCHC 2 cut(s) 484, 979
SfaNI GCATC 1 cut(s) 516
SfcI CTRYAG 2 cut(s) 210, 600
Sfr303I CCGCGG 1 cut(s) 219
SfuI TTCGAA 1 cut(s) 756
SgrAI CRCCGGYG 1 cut(s) 862
SgrBI CCGCGG 1 cut(s) 219
SmlI CTYRAG 2 cut(s) 246, 545
SmoI CTYRAG 2 cut(s) 246, 545
SphI GCATGC 1 cut(s) 466
Sse9I AATT 2 cut(s) 336, 1165
SspMI CTAG 2 cut(s) 924, 1032
SstI GAGCTC 1 cut(s) 484
StyD4I CCNGG 3 cut(s) 302, 769, 907
StyI CCWWGG 1 cut(s) 957
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 3 cut(s) 84, 967, 991
TaqI TCGA 2 cut(s) 535, 756
TasI AATT 2 cut(s) 336, 1165
TauI GCSGC 6 cut(s) 218, 221, 245, 329, 446, 1031
TfiI GAWTC 3 cut(s) 560, 813, 1158
Tru1I TTAA 2 cut(s) 272, 951
Tru9I TTAA 2 cut(s) 272, 951
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 1 cut(s) 1008
TseI GCWGC 9 cut(s) 11, 203, 206, 221, 230, 239, 251, 454, 1093
Tsp45I GTSAC 1 cut(s) 1008
TspDTI ATGAA 5 cut(s) 56, 518, 716, 724, 810
TspGWI ACGGA 2 cut(s) 127, 297
TspRI CASTG 1 cut(s) 336
Tth111I GACNNNGTC 2 cut(s) 137, 987
VneI GTGCAC 1 cut(s) 975
XapI RAATTY 1 cut(s) 336
XceI RCATGY 2 cut(s) 466, 526
XspI CTAG 2 cut(s) 924, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.