Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002379

Physical Location & Seq

Genomic Coordinates Reverse (-)

4072420 .. 4076503

Gene Structure 4084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G057500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGGGAGAGCTACAAGATGGTTGAAGGGCTTGTTGGGGATGAAGAAAGAGAAAGACCATGTTGGCAATACAAGCACTACGTCTGGTGATCGGAAGGAGAAGAAACGGTGGAGTTTTGCCAAGTCGGGGAAAGACACAGGTAGTACAATTGATCATGTTACAAACAATCTTCCACCAAATGTTCCTGTCCCCGACTCTGCTTGGCTCAGATCCTATCTTGCTGAGTCAGACAAGGAGCAGAACAAGCACGCAATTGCGGTGGCTGCTGCCACCGCAGCTGCTGCTGATGCCGCCGTGGTCGCGGCTCAGGCGGCCGTGGCGGTTGTGAGGCTGACAAGTCAAGGCGGTGGACTCATGTTTGGAAAAAAAGAGAGATGGGCTGCAATGAAGATTCAAACTGTTTTCAGAGGCTATCTGGCACGAAAGGCACACCGAGCTCTTAGAGGACTGGTTAAGTTACAGGCTCTTGTTAGAGGCTATCTTGTTCGGAAACGGGCTGCTGCTACTCTTCACAGTATGCAAGCTCTTTTTAGAGCACAGACAACTGTCCGATTCCAGCGAGCACGTCGTTCTTTCAATAAAGAGAACAGGTTTCTACCTGAAATCAAAGCCCGGAAGTCCGTTCAGGAAAGATTTGACGATGCAAGAAGTGAATTTTATAGCAGGAGGCTATCTGCAACTTATGAAACTTCCATTAATGGCTTTGATGAAAGCCCAAAAATTGTGGAAATTGACACATTCAAAACCAGATCCAGGTCTCGTAGATTCAACACCGTACTATCTGAATGTAGTGAAGACCTGCCTTACCAAACAATCTCATCACCACTTCCCTGTCCATTTCCAACCCGTATTTCTATACCTGATAGACAGAAGCCTCAAGATTTTGAATGGTGCTTTAATGGTGACGAATGCAAGTTCTCTACTGCCCACAACACTCCGCGGTTCACAAACTCTTTTCGATCCAATGCTCCCAGTACACCAGCCAAGAGTGTTTGTGGAGACACCTTCTTTCAGCCTTACTCAAACTTCCCAAACTACATGTCAAGCACTCAATCATTCAACGCAAAGTCAAGGTCCCACAGTGCCCCTAAGCAAAGGCCGGAACCAGGGCCGAAGAAGAGGCTTTCGCTTAATGAAATGATGGCAGCAAGAAACAGCATAAGCGGAGTTCGAATGCATCGATCGTGTAATCAAGTCCAAGAAGAAGAAGAGGAAGAAGTCTTGAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

411

Amino Acids

46.22

Weight (kDa)

10.09

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16490
fragaria_vesca	FvH4_1g06300 FvH4_6g32490 FvH4_6g32490 FvH4_6g32490
malus_domestica	MD02G1066900.v1.1 MD09G1201900.v1.1 MD15G1197400.v1.1 MD17G1182000.v1.1
prunus_persica	Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.7G218500_v2.0.a1 Prupe.7G218500_v2.0.a1
pyrus_communis	pycom02g05290 pycom09g11870 pycom17g19160
rosa_chinensis	RchiOBHm_Chr2g0092031 RchiOBHm_Chr2g0140781
rosa_laevigata	RLG00000016269 RLG00000019897
rosa_multiflora	Rmu_sc0000524.1_g000003 Rmu_sc0003342.1_g000033
rosa_roxburghii	Rroxscaffold_2G00104500 Rroxscaffold_2G00149540
rosa_rugosa	Rorug02G0022400 Rorug02G0022400 Rorug02G0365100 Rorug02G0365200
rosa_samantha	Rh2AG068000 Rh2AG416500 Rh2BG067400 Rh2BG426000 Rh2CG068700 Rh2CG402700 Rh2DG067000 Rh2DG436000
rosa_wichuraiana	Rw2G005310 Rw2G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	807
AccII	CGCG	2 cut(s)	302, 940
AclWI	GGATC	3 cut(s)	204, 744, 954
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	653
AfaI	GTAC	3 cut(s)	145, 777, 976
AfiI	CCNNNNNNNGG	3 cut(s)	126, 753, 1106
AflIII	ACRYGT	1 cut(s)	1038
AgsI	TTSAA	8 cut(s)	25, 395, 577, 742, 769, 887, 1060, 1225
AjiI	CACGTC	1 cut(s)	566
AjnI	CCWGG	2 cut(s)	752, 1105
AjuI	GAANNNNNNNTTGG	4 cut(s)	17, 49, 835, 867
AluBI	AGCT	4 cut(s)	11, 278, 437, 524
AluI	AGCT	4 cut(s)	11, 278, 437, 524
Alw21I	GWGCWC	3 cut(s)	439, 538, 565
Alw26I	GTCTC	2 cut(s)	762, 993
AlwI	GGATC	3 cut(s)	204, 744, 954
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	3 cut(s)	312, 1097, 1109
ApeKI	GCWGC	9 cut(s)	263, 266, 275, 278, 281, 380, 497, 500, 1145
ApoI	RAATTY	1 cut(s)	653
ArsI	GACNNNNNNTTYG	4 cut(s)	1025, 1057, 1058, 1090
AseI	ATTAAT	1 cut(s)	696
AspS9I	GGNCC	2 cut(s)	1074, 1109
AsuC2I	CCSGG	1 cut(s)	613
AsuHPI	GGTGA	3 cut(s)	98, 813, 914
AsuII	TTCGAA	1 cut(s)	1171
AvaII	GGWCC	1 cut(s)	1074
BaeGI	GKGCMC	1 cut(s)	1087
BanII	GRGCYC	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	801
Bbv12I	GWGCWC	3 cut(s)	439, 538, 565
BbvI	GCAGC	9 cut(s)	250, 253, 265, 268, 287, 367, 484, 487, 1157
BccI	CCATC	3 cut(s)	12, 369, 1135
BceAI	ACGGC	2 cut(s)	278, 299
BciT130I	CCWGG	2 cut(s)	754, 1107
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	762, 993
BfuAI	ACCTGC	1 cut(s)	807
Bme1390I	CCNGG	3 cut(s)	613, 754, 1107
Bme18I	GGWCC	1 cut(s)	1074
BmgBI	CACGTC	1 cut(s)	566
BmgT120I	GGNCC	2 cut(s)	1074, 1109
BmiI	GGNNCC	2 cut(s)	1076, 1104
BmrFI	CCNGG	3 cut(s)	613, 754, 1107
BmrI	ACTGGG	1 cut(s)	966
BmsI	GCATC	3 cut(s)	277, 631, 1186
BmuI	ACTGGG	1 cut(s)	966
BoxI	GACNNNNGTC	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	801
Bpu10I	CCTNAGC	2 cut(s)	306, 1089
Bpu14I	TTCGAA	1 cut(s)	1171
BpuEI	CTTGAG	1 cut(s)	861
BpuMI	CCSGG	1 cut(s)	613
Bsa29I	ATCGAT	1 cut(s)	1180
BsaI	GGTCTC	1 cut(s)	762
BsaJI	CCNNGG	4 cut(s)	294, 315, 938, 1106
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 753, 1106
Bse1I	ACTGG	2 cut(s)	453, 972
Bse3DI	GCAATG	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	754, 1107
BseCI	ATCGAT	1 cut(s)	1180
BseDI	CCNNGG	4 cut(s)	294, 315, 938, 1106
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	126, 753, 1106
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	3 cut(s)	213, 220, 320
BseNI	ACTGG	2 cut(s)	453, 972
BseSI	GKGCMC	1 cut(s)	1087
BseX3I	CGGCCG	1 cut(s)	312
BseXI	GCAGC	9 cut(s)	250, 253, 265, 268, 287, 367, 484, 487, 1157
Bsh1236I	CGCG	2 cut(s)	302, 940
Bsh1285I	CGRYCG	2 cut(s)	315, 1184
BshFI	GGCC	3 cut(s)	314, 1099, 1111
BshVI	ATCGAT	1 cut(s)	1180
BsiEI	CGRYCG	2 cut(s)	315, 1184
BsiHKAI	GWGCWC	3 cut(s)	439, 538, 565
BsiSI	CCGG	2 cut(s)	613, 1100
BslFI	GGGAC	2 cut(s)	173, 1060
BslI	CCNNNNNNNGG	3 cut(s)	126, 753, 1106
BsmAI	GTCTC	2 cut(s)	762, 993
BsmFI	GGGAC	2 cut(s)	173, 1060
BsmI	GAATGC	2 cut(s)	914, 1179
BsnI	GGCC	3 cut(s)	314, 1099, 1111
Bso31I	GGTCTC	1 cut(s)	762
Bsp119I	TTCGAA	1 cut(s)	1171
Bsp1286I	GDGCHC	4 cut(s)	439, 538, 565, 1087
Bsp143I	GATC	6 cut(s)	88, 151, 209, 749, 959, 1181
BspANI	GGCC	3 cut(s)	314, 1099, 1111
BspCNI	CTCAG	3 cut(s)	214, 219, 319
BspDI	ATCGAT	1 cut(s)	1180
BspFNI	CGCG	2 cut(s)	302, 940
BspLI	GGNNCC	2 cut(s)	1076, 1104
BspMI	ACCTGC	1 cut(s)	807
BspPI	GGATC	3 cut(s)	204, 744, 954
BspT104I	TTCGAA	1 cut(s)	1171
BspTNI	GGTCTC	1 cut(s)	762
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	453, 972
BssECI	CCNNGG	4 cut(s)	294, 315, 938, 1106
BssMI	GATC	6 cut(s)	88, 151, 209, 749, 959, 1181
Bst2UI	CCWGG	2 cut(s)	754, 1107
Bst4CI	ACNGT	6 cut(s)	108, 400, 515, 547, 775, 1082
Bst6I	CTCTTC	3 cut(s)	513, 1112, 1203
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	1171
BstC8I	GCNNGC	3 cut(s)	249, 522, 561
BstDEI	CTNAG	5 cut(s)	206, 222, 306, 440, 1089
BstDSI	CCRYGG	3 cut(s)	294, 315, 938
BstF5I	GGATG	1 cut(s)	45
BstFNI	CGCG	2 cut(s)	302, 940
BstKTI	GATC	6 cut(s)	91, 154, 212, 752, 962, 1184
BstMAI	GTCTC	2 cut(s)	762, 993
BstMBI	GATC	6 cut(s)	88, 151, 209, 749, 959, 1181
BstMCI	CGRYCG	2 cut(s)	315, 1184
BstNI	CCWGG	2 cut(s)	754, 1107
BstNSI	RCATGY	1 cut(s)	1042
BstPAI	GACNNNNGTC	1 cut(s)	545
BstSCI	CCNGG	3 cut(s)	611, 752, 1105
BstSLI	GKGCMC	1 cut(s)	1087
BstUI	CGCG	2 cut(s)	302, 940
BstV1I	GCAGC	9 cut(s)	250, 253, 265, 268, 287, 367, 484, 487, 1157
BstV2I	GAAGAC	1 cut(s)	801
BstX2I	RGATCY	2 cut(s)	209, 749
BstYI	RGATCY	2 cut(s)	209, 749
BstZI	CGGCCG	1 cut(s)	312
Bsu15I	ATCGAT	1 cut(s)	1180
BsuRI	GGCC	3 cut(s)	314, 1099, 1111
BsuTUI	ATCGAT	1 cut(s)	1180
BtgI	CCRYGG	3 cut(s)	294, 315, 938
BtrI	CACGTC	1 cut(s)	566
BtsCI	GGATG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	1087
BveI	ACCTGC	1 cut(s)	807
Cac8I	GCNNGC	3 cut(s)	249, 522, 561
CaiI	CAGNNNCTG	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	1074, 1109
Cfr42I	CCGCGG	1 cut(s)	941
ClaI	ATCGAT	1 cut(s)	1180
Csp6I	GTAC	3 cut(s)	144, 776, 975
CspCI	CAANNNNNGTGG	4 cut(s)	240, 275, 705, 740
CviAII	CATG	4 cut(s)	59, 155, 355, 1039
CviQI	GTAC	3 cut(s)	144, 776, 975
DdeI	CTNAG	5 cut(s)	206, 222, 306, 440, 1089
DpnI	GATC	6 cut(s)	90, 153, 211, 751, 961, 1183
DpnII	GATC	6 cut(s)	88, 151, 209, 749, 959, 1181
EaeI	YGGCCR	1 cut(s)	312
EagI	CGGCCG	1 cut(s)	312
Eam1104I	CTCTTC	3 cut(s)	513, 1112, 1203
EarI	CTCTTC	3 cut(s)	513, 1112, 1203
Ecl136II	GAGCTC	1 cut(s)	437
EclXI	CGGCCG	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	439
Eco31I	GGTCTC	1 cut(s)	762
Eco47I	GGWCC	1 cut(s)	1074
Eco52I	CGGCCG	1 cut(s)	312
Eco53kI	GAGCTC	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	1074
EcoRII	CCWGG	2 cut(s)	752, 1105
EcoT22I	ATGCAT	1 cut(s)	1179
EcoT38I	GRGCYC	1 cut(s)	439
FaeI	CATG	4 cut(s)	62, 158, 358, 1042
FaiI	YATR	9 cut(s)	60, 156, 356, 518, 660, 684, 857, 1040, 1160
FaqI	GGGAC	2 cut(s)	173, 1060
FatI	CATG	4 cut(s)	58, 154, 354, 1038
FbaI	TGATCA	1 cut(s)	151
FokI	GGATG	1 cut(s)	52
FriOI	GRGCYC	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	314, 1099, 1111
HapII	CCGG	2 cut(s)	613, 1100
Hin1II	CATG	4 cut(s)	62, 158, 358, 1042
HinfI	GANTC	6 cut(s)	194, 224, 351, 391, 552, 765
HpaII	CCGG	2 cut(s)	613, 1100
HphI	GGTGA	3 cut(s)	98, 813, 914
Hpy166II	GTNNAC	3 cut(s)	350, 945, 977
Hpy188I	TCNGA	7 cut(s)	93, 209, 229, 407, 489, 551, 784
Hpy188III	TCNNGA	3 cut(s)	626, 878, 1222
Hpy8I	GTNNAC	3 cut(s)	350, 945, 977
Hpy99I	CGWCG	1 cut(s)	570
HpyAV	CCTTC	3 cut(s)	19, 88, 1015
HpyCH4III	ACNGT	6 cut(s)	108, 400, 515, 547, 775, 1082
HpyCH4IV	ACGT	2 cut(s)	80, 565
HpyCH4V	TGCA	6 cut(s)	383, 520, 644, 677, 912, 1177
HpyF3I	CTNAG	5 cut(s)	206, 222, 306, 440, 1089
HpySE526I	ACGT	2 cut(s)	80, 565
Hsp92II	CATG	4 cut(s)	62, 158, 358, 1042
Ksp22I	TGATCA	1 cut(s)	151
KspI	CCGCGG	1 cut(s)	941
Kzo9I	GATC	6 cut(s)	88, 151, 209, 749, 959, 1181
LmnI	GCTCC	2 cut(s)	235, 973
Lsp1109I	GCAGC	9 cut(s)	250, 253, 265, 268, 287, 367, 484, 487, 1157
LweI	GCATC	3 cut(s)	277, 631, 1186
MaeII	ACGT	2 cut(s)	80, 565
MaeIII	GTNAC	3 cut(s)	157, 456, 902
MalI	GATC	6 cut(s)	90, 153, 211, 751, 961, 1183
MboI	GATC	6 cut(s)	88, 151, 209, 749, 959, 1181
MfeI	CAATTG	2 cut(s)	147, 252
MflI	RGATCY	2 cut(s)	209, 749
MhlI	GDGCHC	4 cut(s)	439, 538, 565, 1087
MluCI	AATT	6 cut(s)	147, 252, 653, 720, 729, 1225
MlyI	GAGTC	3 cut(s)	188, 233, 345
MmeI	TCCRAC	1 cut(s)	866
MnlI	CCTC	8 cut(s)	321, 401, 437, 467, 660, 885, 1113, 1204
Mph1103I	ATGCAT	1 cut(s)	1179
MseI	TTAA	4 cut(s)	453, 696, 897, 1131
MspA1I	CMGCKG	2 cut(s)	278, 940
MspI	CCGG	2 cut(s)	613, 1100
MspR9I	CCNGG	3 cut(s)	613, 754, 1107
MunI	CAATTG	2 cut(s)	147, 252
Mva1269I	GAATGC	2 cut(s)	914, 1179
MvaI	CCWGG	2 cut(s)	754, 1107
MvnI	CGCG	2 cut(s)	302, 940
NciI	CCSGG	1 cut(s)	613
NdeII	GATC	6 cut(s)	88, 151, 209, 749, 959, 1181
NlaIII	CATG	4 cut(s)	62, 158, 358, 1042
NlaIV	GGNNCC	2 cut(s)	1076, 1104
NmuCI	GTSAC	1 cut(s)	902
NsiI	ATGCAT	1 cut(s)	1179
NspI	RCATGY	1 cut(s)	1042
NspV	TTCGAA	1 cut(s)	1171
PciI	ACATGT	1 cut(s)	1038
PcsI	WCGNNNNNNNCGW	1 cut(s)	1177
PctI	GAATGC	2 cut(s)	914, 1179
PfeI	GAWTC	3 cut(s)	391, 552, 765
Ple19I	CGATCG	1 cut(s)	1184
PleI	GAGTC	3 cut(s)	188, 232, 345
PpsI	GAGTC	3 cut(s)	188, 232, 345
PpuMI	RGGWCCY	1 cut(s)	1074
PscI	ACATGT	1 cut(s)	1038
PshAI	GACNNNNGTC	1 cut(s)	545
PshBI	ATTAAT	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	1074
Psp6I	CCWGG	2 cut(s)	752, 1105
PspGI	CCWGG	2 cut(s)	752, 1105
PspN4I	GGNNCC	2 cut(s)	1076, 1104
PspPI	GGNCC	2 cut(s)	1074, 1109
PspPPI	RGGWCCY	1 cut(s)	1074
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	209, 749
PvuI	CGATCG	1 cut(s)	1184
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	3 cut(s)	145, 777, 976
RsaNI	GTAC	3 cut(s)	144, 776, 975
SacI	GAGCTC	1 cut(s)	439
SacII	CCGCGG	1 cut(s)	941
SaqAI	TTAA	4 cut(s)	453, 696, 897, 1131
Sau3AI	GATC	6 cut(s)	88, 151, 209, 749, 959, 1181
Sau96I	GGNCC	2 cut(s)	1074, 1109
SchI	GAGTC	3 cut(s)	188, 233, 345
ScrFI	CCNGG	3 cut(s)	613, 754, 1107
SduI	GDGCHC	4 cut(s)	439, 538, 565, 1087
SfaNI	GCATC	3 cut(s)	277, 631, 1186
Sfr303I	CCGCGG	1 cut(s)	941
SfuI	TTCGAA	1 cut(s)	1171
SgrBI	CCGCGG	1 cut(s)	941
SinI	GGWCC	1 cut(s)	1074
SmlI	CTYRAG	1 cut(s)	876
SmoI	CTYRAG	1 cut(s)	876
Sse9I	AATT	6 cut(s)	147, 252, 653, 720, 729, 1225
SstI	GAGCTC	1 cut(s)	439
StyD4I	CCNGG	3 cut(s)	611, 752, 1105
TaaI	ACNGT	6 cut(s)	108, 400, 515, 547, 775, 1082
TaiI	ACGT	2 cut(s)	83, 568
TaqI	TCGA	3 cut(s)	958, 1171, 1180
TasI	AATT	6 cut(s)	147, 252, 653, 720, 729, 1225
TatI	WGTACW	2 cut(s)	143, 974
TauI	GCSGC	3 cut(s)	293, 305, 314
TfiI	GAWTC	3 cut(s)	391, 552, 765
Tru1I	TTAA	4 cut(s)	453, 696, 897, 1131
Tru9I	TTAA	4 cut(s)	453, 696, 897, 1131
TscAI	CASTG	1 cut(s)	1087
TseFI	GTSAC	1 cut(s)	902
TseI	GCWGC	9 cut(s)	263, 266, 275, 278, 281, 380, 497, 500, 1145
Tsp45I	GTSAC	1 cut(s)	902
TspDTI	ATGAA	5 cut(s)	56, 401, 699, 723, 1149
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	1 cut(s)	1087
VpaK11BI	GGWCC	1 cut(s)	1074
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	1 cut(s)	653
XceI	RCATGY	1 cut(s)	1042
Zsp2I	ATGCAT	1 cut(s)	1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.