Rh2DG067000

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002379
Physical Location & Seq
Forward (+)
5036690 .. 5039137
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG067000.1

Sequence Viewer

Length: 1332 bp
ATGGGTAGAGCAACGAGGTGGCTTAAGGGCTTGTTTGGGATTAAGAGGGACAAAGACAGAGAGCACCAGCAGAGACCCAATTCAGATTCAGATTCAGCTTTGGTTTCCTGTTTTGAATACAAGAAAGCTTCAAGCTTTGGGAGGGAGGCGAGTCCTCCTCCGGCGACGACTCTGCTGTGTCATAATCCGGCCACTATCCCGCCGAACATTTCACCGTCCGAGGCGGCCTGGCTGAGGTCCTTCTACAATGAAACAGAGAATGAGCAGAGCAAGCACGCAATTGCAGTTGCGGCCGCCACGGCCGCCGCTGCTGATGCCGCAGTTGCTGCGGCTCAGGCGGCCGTGGCGGTCGTCCGCCTCACTAGCAATGGCAGAGGCACCATGTTCGGCGGCGGCCGCGAGAGATGGGCCGCCGTCAAGGTCCAAACTTGCTTCCGGGCATACTTGGCCAGAAAAGCCCTGAGAGCTCTGAAAGGACTGGTGAAGTTGCAGGCATTAGTGAGAGGCTATTTAGTGAGGAAGCAAGCCACTGCTACACTCCACGGTATGCAAGCTCTGGTCAGAGCACAGGCCACTGTTCGTTCTCATAAATCCAGGGGCCTCAACCTCAACATTAACATCACTGAAGCTAACAGAATCGAAATGCGCGCACGAAAATCCACGGAGAGGTTTGATGAGAGTCGGAGCGAGCACACAGCTCCGAGCCACAGCAGGAGGCTCTCTGGTTCTTTGGAGAACAACAACAGTTTCAACACCATTGATGAAATTCCCAAGATTGTTGAGGTTGATACAGGAAGGCCCAAATCCAGGTCTCGCAGAACCAACACTTCCATTTCTGAACTAAGCGACGAATTTTACCAGGCAGTGTCTTCTCCGCTCCCCTGTTGCTGTCCGGCCAGGTTGACCATCCCCGACCACCGAAACTTCCAAGAGTCCGACTGGGGACTCACCGGAGAGGAATGCAGGTTCTCCACGGCGCAGAGCACGCCGAGATTTGTGAACTCGTGCGGGTCTAATGCCCCGGCGACGCCTGCCAAGAGTGTCTGCGCCGACAACTTTTACAGGGGATTTGGGAACTACCCGAACTACATGGCGAGCACTCAGTCTTTCAAGGCCAAGTTGAGGTCTCACAGCGCTCCGAAACAGAGGCCGGAGCCGGGGACGAAGAAGAGGCTTTCGCTTAATGAGTTGCTCGAGTCAAGGAACAGTTTGAGTGGTGTTAAGATGCAGAGGTCTTGTTCACAAGTGCAGGAAGCCATTAATTTCAAGAATGCTGTGATGGGGAAGCTTGATAGGTCGTCAGATTTTAGTAGCTTGCTGAGGAGGTCTTAA

Protein Analysis

443

Amino Acids

48.83

Weight (kDa)

10.07

Isoelectric Point (pI)

59.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 331 - 407 2.6e-14 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 954
AccB1I GGYRCC 1 cut(s) 377
AccBSI CCGCTC 1 cut(s) 877
AccII CGCG 2 cut(s) 399, 648
AcoI YGGCCR 7 cut(s) 189, 291, 300, 339, 394, 447, 894
AcsI RAATTY 2 cut(s) 765, 851
AcuI CTGAAG 1 cut(s) 645
AcyI GRCGYC 1 cut(s) 1028
AfeI AGCGCT 1 cut(s) 1135
AfiI CCNNNNNNNGG 5 cut(s) 234, 666, 807, 1122, 1157
AflII CTTAAG 1 cut(s) 23
AgsI TTSAA 5 cut(s) 116, 132, 751, 1111, 1267
AjnI CCWGG 5 cut(s) 227, 593, 806, 858, 896
AloI GAACNNNNNNTCC 2 cut(s) 950, 982
AluBI AGCT 9 cut(s) 98, 128, 135, 467, 554, 629, 698, 1288, 1314
AluI AGCT 9 cut(s) 98, 128, 135, 467, 554, 629, 698, 1288, 1314
Alw21I GWGCWC 6 cut(s) 66, 469, 568, 693, 986, 1100
Alw26I GTCTC 3 cut(s) 67, 816, 1131
AlwNI CAGNNNCTG 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 1193
Aor51HI AGCGCT 1 cut(s) 1135
ApeKI GCWGC 2 cut(s) 308, 326
ApoI RAATTY 2 cut(s) 765, 851
AseI ATTAAT 1 cut(s) 1260
AspLEI GCGC 5 cut(s) 648, 650, 979, 1049, 1136
AspS9I GGNCC 5 cut(s) 237, 408, 421, 598, 798
AsuC2I CCSGG 3 cut(s) 437, 1022, 1158
AsuHPI GGTGA 3 cut(s) 204, 493, 940
AvaI CYCGRG 1 cut(s) 1193
AvaII GGWCC 2 cut(s) 237, 421
BalI TGGCCA 1 cut(s) 449
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 469
BauI CACGAG 1 cut(s) 1003
BbsI GAAGAC 1 cut(s) 861
Bbv12I GWGCWC 6 cut(s) 66, 469, 568, 693, 986, 1100
BbvCI CCTCAGC 2 cut(s) 233, 1319
BbvI GCAGC 2 cut(s) 295, 313
BccI CCATC 3 cut(s) 399, 914, 1273
BceAI ACGGC 4 cut(s) 315, 326, 398, 990
BcgI CGANNNNNNTGC 4 cut(s) 154, 188, 367, 401
BciT130I CCWGG 5 cut(s) 229, 595, 808, 860, 898
BcnI CCSGG 3 cut(s) 437, 1022, 1158
BcoDI GTCTC 3 cut(s) 67, 816, 1131
BfaI CTAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 1137
BfrI CTTAAG 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 954
BglI GCCNNNNNGGC 1 cut(s) 299
Bme1390I CCNGG 8 cut(s) 229, 437, 595, 808, 860, 898, 1022, 1158
Bme18I GGWCC 2 cut(s) 237, 421
BmeT110I CYCGRG 1 cut(s) 1193
BmgT120I GGNCC 5 cut(s) 237, 408, 421, 598, 798
BmiI GGNNCC 3 cut(s) 379, 599, 1155
BmrFI CCNGG 8 cut(s) 229, 437, 595, 808, 860, 898, 1022, 1158
BmrI ACTGGG 1 cut(s) 949
BmsI GCATC 2 cut(s) 304, 1215
BmuI ACTGGG 1 cut(s) 949
BpiI GAAGAC 1 cut(s) 861
BplI GAGNNNNNCTC 2 cut(s) 142, 174
Bpu10I CCTNAGC 3 cut(s) 233, 333, 1319
BpuMI CCSGG 3 cut(s) 437, 1022, 1158
BsaHI GRCGYC 1 cut(s) 1028
BsaI GGTCTC 3 cut(s) 67, 816, 1131
BsaJI CCNNGG 9 cut(s) 219, 297, 342, 541, 594, 660, 972, 1020, 1157
BsaWI WCCGGW 1 cut(s) 950
Bsc4I CCNNNNNNNGG 5 cut(s) 234, 666, 807, 1122, 1157
Bse1I ACTGG 2 cut(s) 483, 944
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 5 cut(s) 229, 595, 808, 860, 898
BseDI CCNNGG 9 cut(s) 219, 297, 342, 541, 594, 660, 972, 1020, 1157
BseGI GGATG 1 cut(s) 906
BseLI CCNNNNNNNGG 5 cut(s) 234, 666, 807, 1122, 1157
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 5 cut(s) 224, 347, 452, 1115, 1310
BseNI ACTGG 2 cut(s) 483, 944
BsePI GCGCGC 1 cut(s) 646
BseRI GAGGAG 1 cut(s) 147
BseX3I CGGCCG 4 cut(s) 291, 300, 339, 394
BseXI GCAGC 2 cut(s) 295, 313
BsgI GTGCAG 1 cut(s) 1268
Bsh1236I CGCG 2 cut(s) 399, 648
Bsh1285I CGRYCG 5 cut(s) 294, 303, 342, 351, 397
BshNI GGYRCC 1 cut(s) 377
BsiEI CGRYCG 5 cut(s) 294, 303, 342, 351, 397
BsiHKAI GWGCWC 6 cut(s) 66, 469, 568, 693, 986, 1100
BsiHKCI CYCGRG 1 cut(s) 1193
BsiSI CCGG 8 cut(s) 161, 188, 436, 893, 951, 1022, 1151, 1157
BslFI GGGAC 3 cut(s) 62, 957, 1174
BslI CCNNNNNNNGG 5 cut(s) 234, 666, 807, 1122, 1157
BsmAI GTCTC 3 cut(s) 67, 816, 1131
BsmFI GGGAC 3 cut(s) 62, 957, 1174
BsmI GAATGC 2 cut(s) 965, 1276
Bso31I GGTCTC 3 cut(s) 67, 816, 1131
BsoBI CYCGRG 1 cut(s) 1193
Bsp1286I GDGCHC 6 cut(s) 66, 469, 568, 693, 986, 1100
BspCNI CTCAG 5 cut(s) 225, 346, 453, 1114, 1311
BspFNI CGCG 2 cut(s) 399, 648
BspLI GGNNCC 3 cut(s) 379, 599, 1155
BspMI ACCTGC 1 cut(s) 954
BspT107I GGYRCC 1 cut(s) 377
BspTI CTTAAG 1 cut(s) 23
BspTNI GGTCTC 3 cut(s) 67, 816, 1131
BsrBI CCGCTC 1 cut(s) 877
BsrDI GCAATG 1 cut(s) 373
BsrI ACTGG 2 cut(s) 483, 944
BssECI CCNNGG 9 cut(s) 219, 297, 342, 541, 594, 660, 972, 1020, 1157
BssHII GCGCGC 1 cut(s) 646
BssNI GRCGYC 1 cut(s) 1028
BssSI CACGAG 1 cut(s) 1003
Bst2BI CACGAG 1 cut(s) 1003
Bst2UI CCWGG 5 cut(s) 229, 595, 808, 860, 898
Bst4CI ACNGT 5 cut(s) 216, 545, 577, 746, 1208
Bst6I CTCTTC 1 cut(s) 1163
BstACI GRCGYC 1 cut(s) 1028
BstAFI CTTAAG 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 326
BstDEI CTNAG 6 cut(s) 233, 333, 461, 842, 1101, 1319
BstDSI CCRYGG 5 cut(s) 297, 342, 541, 660, 972
BstENI CCTNNNNNAGG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 906
BstFNI CGCG 2 cut(s) 399, 648
BstH2I RGCGCY 1 cut(s) 1137
BstHHI GCGC 5 cut(s) 648, 650, 979, 1049, 1136
BstMAI GTCTC 3 cut(s) 67, 816, 1131
BstMCI CGRYCG 5 cut(s) 294, 303, 342, 351, 397
BstNI CCWGG 5 cut(s) 229, 595, 808, 860, 898
BstSCI CCNGG 8 cut(s) 227, 435, 593, 806, 858, 896, 1020, 1156
BstUI CGCG 2 cut(s) 399, 648
BstV1I GCAGC 2 cut(s) 295, 313
BstV2I GAAGAC 1 cut(s) 861
BstZI CGGCCG 4 cut(s) 291, 300, 339, 394
BtgI CCRYGG 5 cut(s) 297, 342, 541, 660, 972
BtsCI GGATG 1 cut(s) 906
BtsI GCAGTG 2 cut(s) 528, 870
BtsIMutI CAGTG 4 cut(s) 528, 573, 621, 870
BveI ACCTGC 1 cut(s) 954
CaiI CAGNNNCTG 1 cut(s) 326
CciNI GCGGCCGC 2 cut(s) 291, 394
CfoI GCGC 5 cut(s) 648, 650, 979, 1049, 1136
Cfr13I GGNCC 5 cut(s) 237, 408, 421, 598, 798
CseI GACGC 1 cut(s) 1036
CviAII CATG 2 cut(s) 382, 1090
DdeI CTNAG 6 cut(s) 233, 333, 461, 842, 1101, 1319
EaeI YGGCCR 7 cut(s) 189, 291, 300, 339, 394, 447, 894
EagI CGGCCG 4 cut(s) 291, 300, 339, 394
Eam1104I CTCTTC 1 cut(s) 1163
EarI CTCTTC 1 cut(s) 1163
EciI GGCGGA 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 467
EclXI CGGCCG 4 cut(s) 291, 300, 339, 394
Eco24I GRGCYC 1 cut(s) 469
Eco31I GGTCTC 3 cut(s) 67, 816, 1131
Eco47I GGWCC 2 cut(s) 237, 421
Eco47III AGCGCT 1 cut(s) 1135
Eco52I CGGCCG 4 cut(s) 291, 300, 339, 394
Eco53kI GAGCTC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 645
Eco88I CYCGRG 1 cut(s) 1193
EcoICRI GAGCTC 1 cut(s) 467
EcoNI CCTNNNNNAGG 1 cut(s) 232
EcoO109I RGGNCCY 2 cut(s) 237, 598
EcoRII CCWGG 5 cut(s) 227, 593, 806, 858, 896
EcoT38I GRGCYC 1 cut(s) 469
FaeI CATG 2 cut(s) 385, 1093
FaiI YATR 6 cut(s) 183, 383, 442, 548, 588, 1091
FaqI GGGAC 3 cut(s) 62, 957, 1174
FatI CATG 2 cut(s) 381, 1089
FauI CCCGC 2 cut(s) 207, 1001
FokI GGATG 1 cut(s) 893
FriOI GRGCYC 1 cut(s) 469
FspBI CTAG 1 cut(s) 363
GlaI GCGC 5 cut(s) 647, 649, 978, 1048, 1135
HaeII RGCGCY 1 cut(s) 1137
HapII CCGG 8 cut(s) 161, 188, 436, 893, 951, 1022, 1151, 1157
HgaI GACGC 1 cut(s) 1036
HhaI GCGC 5 cut(s) 648, 650, 979, 1049, 1136
Hin1I GRCGYC 1 cut(s) 1028
Hin1II CATG 2 cut(s) 385, 1093
Hin6I GCGC 5 cut(s) 646, 648, 977, 1047, 1134
HinP1I GCGC 5 cut(s) 646, 648, 977, 1047, 1134
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HindIII AAGCTT 3 cut(s) 126, 133, 1286
HinfI GANTC 9 cut(s) 86, 92, 151, 169, 636, 679, 932, 945, 1196
HpaII CCGG 8 cut(s) 161, 188, 436, 893, 951, 1022, 1151, 1157
HphI GGTGA 3 cut(s) 204, 493, 940
Hpy166II GTNNAC 3 cut(s) 903, 1000, 1241
Hpy188III TCNNGA 1 cut(s) 1267
Hpy8I GTNNAC 3 cut(s) 903, 1000, 1241
Hpy99I CGWCG 3 cut(s) 169, 851, 1030
HpyAV CCTTC 2 cut(s) 250, 789
HpyCH4III ACNGT 5 cut(s) 216, 545, 577, 746, 1208
HpyCH4V TGCA 6 cut(s) 284, 490, 550, 963, 1228, 1249
HpyF3I CTNAG 6 cut(s) 233, 333, 461, 842, 1101, 1319
Hsp92I GRCGYC 1 cut(s) 1028
Hsp92II CATG 2 cut(s) 385, 1093
HspAI GCGC 5 cut(s) 646, 648, 977, 1047, 1134
LmnI GCTCC 5 cut(s) 684, 703, 882, 1141, 1153
Lsp1109I GCAGC 2 cut(s) 295, 313
LweI GCATC 2 cut(s) 304, 1215
MaeI CTAG 1 cut(s) 363
MbiI CCGCTC 1 cut(s) 877
MboII GAAGA 3 cut(s) 861, 1177, 1180
MfeI CAATTG 1 cut(s) 279
MhlI GDGCHC 6 cut(s) 66, 469, 568, 693, 986, 1100
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 5 cut(s) 79, 279, 765, 851, 1261
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 6 cut(s) 160, 163, 688, 939, 941, 1205
MmeI TCCRAC 2 cut(s) 662, 960
Mox20I TGGCCA 1 cut(s) 449
MscI TGGCCA 1 cut(s) 449
MseI TTAA 7 cut(s) 24, 42, 615, 1182, 1221, 1260, 1330
Msp20I TGGCCA 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 308
MspCI CTTAAG 1 cut(s) 23
MspI CCGG 8 cut(s) 161, 188, 436, 893, 951, 1022, 1151, 1157
MspR9I CCNGG 8 cut(s) 229, 437, 595, 808, 860, 898, 1022, 1158
MunI CAATTG 1 cut(s) 279
Mva1269I GAATGC 2 cut(s) 965, 1276
MvaI CCWGG 5 cut(s) 229, 595, 808, 860, 898
MvnI CGCG 2 cut(s) 399, 648
NciI CCSGG 3 cut(s) 437, 1022, 1158
NlaIII CATG 2 cut(s) 385, 1093
NlaIV GGNNCC 3 cut(s) 379, 599, 1155
NmeAIII GCCGAG 1 cut(s) 1014
NotI GCGGCCGC 2 cut(s) 291, 394
PaeR7I CTCGAG 1 cut(s) 1193
PauI GCGCGC 1 cut(s) 646
PctI GAATGC 2 cut(s) 965, 1276
PfeI GAWTC 3 cut(s) 86, 92, 636
PleI GAGTC 6 cut(s) 159, 163, 687, 939, 940, 1204
PpsI GAGTC 6 cut(s) 159, 163, 687, 939, 940, 1204
PpuMI RGGWCCY 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 1260
Psp124BI GAGCTC 1 cut(s) 469
Psp5II RGGWCCY 1 cut(s) 237
Psp6I CCWGG 5 cut(s) 227, 593, 806, 858, 896
PspGI CCWGG 5 cut(s) 227, 593, 806, 858, 896
PspN4I GGNNCC 3 cut(s) 379, 599, 1155
PspPI GGNCC 5 cut(s) 237, 408, 421, 598, 798
PspPPI RGGWCCY 1 cut(s) 237
PspXI VCTCGAGB 1 cut(s) 1193
PstNI CAGNNNCTG 1 cut(s) 326
PteI GCGCGC 1 cut(s) 646
SacI GAGCTC 1 cut(s) 469
SaqAI TTAA 7 cut(s) 24, 42, 615, 1182, 1221, 1260, 1330
Sau96I GGNCC 5 cut(s) 237, 408, 421, 598, 798
SchI GAGTC 6 cut(s) 160, 163, 688, 939, 941, 1205
ScrFI CCNGG 8 cut(s) 229, 437, 595, 808, 860, 898, 1022, 1158
SduI GDGCHC 6 cut(s) 66, 469, 568, 693, 986, 1100
SfaNI GCATC 2 cut(s) 304, 1215
SfiI GGCCNNNNNGGCC 1 cut(s) 299
Sfr274I CTCGAG 1 cut(s) 1193
SinI GGWCC 2 cut(s) 237, 421
SlaI CTCGAG 1 cut(s) 1193
SmlI CTYRAG 2 cut(s) 23, 1193
SmoI CTYRAG 2 cut(s) 23, 1193
Sse9I AATT 5 cut(s) 79, 279, 765, 851, 1261
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 1 cut(s) 469
StyD4I CCNGG 8 cut(s) 227, 435, 593, 806, 858, 896, 1020, 1156
TaaI ACNGT 5 cut(s) 216, 545, 577, 746, 1208
TaqI TCGA 2 cut(s) 639, 1194
TasI AATT 5 cut(s) 79, 279, 765, 851, 1261
TfiI GAWTC 3 cut(s) 86, 92, 636
Tru1I TTAA 7 cut(s) 24, 42, 615, 1182, 1221, 1260, 1330
Tru9I TTAA 7 cut(s) 24, 42, 615, 1182, 1221, 1260, 1330
TscAI CASTG 4 cut(s) 535, 580, 628, 870
TseI GCWGC 2 cut(s) 308, 326
TspDTI ATGAA 2 cut(s) 264, 777
TspGWI ACGGA 1 cut(s) 677
TspRI CASTG 4 cut(s) 535, 580, 628, 870
Vha464I CTTAAG 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 237, 421
VspI ATTAAT 1 cut(s) 1260
XagI CCTNNNNNAGG 1 cut(s) 232
XapI RAATTY 2 cut(s) 765, 851
XhoI CTCGAG 1 cut(s) 1193
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.