Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003342.1

Orthogroup ID

OG0002379

Physical Location & Seq

Genomic Coordinates Forward (+)

134233 .. 136305

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003342.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atggggagagctagaagatggttgaaggctctgttggggatgaagaaagagaaagaccctcttgagcttccaaatagtactaccaatactactcggcctggtgatcggaaagagaagagaaggtggagtttcagcaagtcattgaaagatgcaagtccaattagtcatgtcccggctaatcttcccccgaatgtttcccctgctgactcagcctggctcagatcctatcttgccgaaacagagaaggaacagaacaagcacgcaattgcggtggctgctgccactgccgccgctgctgacgctgccgtggctgctgctcaggcggcggtggcggttgtgaggctgacgagcaagggcggctgtggaggagacttgtttggtaagagagagagatgggcggcaatgaggattcagactgttttcagaggctatttggcaaggaaggcgcaccgagctcttagaggacttgttaagttgcaggctcttgttagaggttttcttgtcaggaaacgagctgctgctactcttcatggtatgcaagctcttattagagcacagacaagtgtccgctaccagcgagcacgtcgttctttcaataaagagaacaggttcctacccgaaagcaggcctaggaagtccattcactccattgagagatttgatgaagcaagaagtgaattttatagcaagaggctttctgcaacttatgaaccttctcttaatggcttggatgaaagcccaaagattgttgaaatcgataccttcagaaccagatccaggtctcgccgatacaacactgtcttatctgaatatggcgaagacgtgccgccttacacctcttcgccactgccatgtccaattccaactcgcattactgtaccggggggccagcagcttcaggattgtgaatggtacttcactgctgatgaatgcaagttcactacagcccatagtaccccccgtttggccagttcttttcggtctaatgcacccagtacacctgccaagagtgtttgtggagacagcttctttcagccttactcaaactgcccaaactatatgtctagcaccaagtcatttaaggccaaatcaaggtcccacagtgcaccgaagcaaaggcctgaacccctgcctaggaagaggctttcccttgatgaaatattggcagcgaggaacagtgtgagtggcattcgaatgcatcgaccctacaaccaagtccaagaagaagtcttgaattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

413

Amino Acids

46.36

Weight (kDa)

10.32

Isoelectric Point (pI)

63.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16490
fragaria_vesca	FvH4_1g06300 FvH4_6g32490 FvH4_6g32490 FvH4_6g32490
malus_domestica	MD02G1066900.v1.1 MD09G1201900.v1.1 MD15G1197400.v1.1 MD17G1182000.v1.1
prunus_persica	Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.7G218500_v2.0.a1 Prupe.7G218500_v2.0.a1
pyrus_communis	pycom02g05290 pycom09g11870 pycom17g19160
rosa_chinensis	RchiOBHm_Chr2g0092031 RchiOBHm_Chr2g0140781
rosa_laevigata	RLG00000016269 RLG00000019897
rosa_multiflora	Rmu_sc0000524.1_g000003 Rmu_sc0003342.1_g000033
rosa_roxburghii	Rroxscaffold_2G00104500 Rroxscaffold_2G00149540
rosa_rugosa	Rorug02G0022400 Rorug02G0022400 Rorug02G0365100 Rorug02G0365200
rosa_samantha	Rh2AG068000 Rh2AG416500 Rh2BG067400 Rh2BG426000 Rh2CG068700 Rh2CG402700 Rh2DG067000 Rh2DG436000
rosa_wichuraiana	Rw2G005310 Rw2G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1009
Acc36I	ACCTGC	1 cut(s)	1009
AclWI	GGATC	2 cut(s)	216, 768
AcoI	YGGCCR	1 cut(s)	966
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	2 cut(s)	748, 881
AfaI	GTAC	5 cut(s)	79, 879, 914, 955, 997
AfiI	CCNNNNNNNGG	5 cut(s)	624, 777, 964, 1092, 1134
AgsI	TTSAA	5 cut(s)	25, 145, 595, 752, 1234
AjiI	CACGTC	2 cut(s)	584, 823
AjnI	CCWGG	3 cut(s)	97, 212, 776
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	7 cut(s)	11, 67, 455, 515, 542, 895, 1026
AluI	AGCT	7 cut(s)	11, 67, 455, 515, 542, 895, 1026
Alw21I	GWGCWC	4 cut(s)	457, 556, 583, 1108
Alw26I	GTCTC	3 cut(s)	363, 786, 1014
Alw44I	GTGCAC	1 cut(s)	1104
AlwI	GGATC	2 cut(s)	216, 768
AoxI	GGCC	6 cut(s)	95, 626, 886, 966, 1083, 1118
ApaLI	GTGCAC	1 cut(s)	1104
ApoI	RAATTY	1 cut(s)	677
ArsI	GACNNNNNNTTYG	2 cut(s)	1046, 1078
Asp700I	GAANNNNTTC	1 cut(s)	608
AspA2I	CCTAGG	2 cut(s)	629, 1133
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	886, 1095
AsuC2I	CCSGG	2 cut(s)	173, 882
AsuHPI	GGTGA	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	1192
AvaII	GGWCC	1 cut(s)	1095
AvrII	CCTAGG	2 cut(s)	629, 1133
BaeGI	GKGCMC	1 cut(s)	1108
BalI	TGGCCA	1 cut(s)	968
BanII	GRGCYC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	4 cut(s)	457, 556, 583, 1108
BccI	CCATC	2 cut(s)	12, 387
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	3 cut(s)	99, 214, 778
BcnI	CCSGG	2 cut(s)	173, 882
BcoDI	GTCTC	3 cut(s)	363, 786, 1014
BfaI	CTAG	4 cut(s)	12, 630, 1065, 1134
BfmI	CTRYAG	1 cut(s)	942
BfuAI	ACCTGC	1 cut(s)	1009
BlnI	CCTAGG	2 cut(s)	629, 1133
BmcAI	AGTACT	1 cut(s)	79
Bme1390I	CCNGG	5 cut(s)	99, 173, 214, 778, 882
Bme18I	GGWCC	1 cut(s)	1095
BmgBI	CACGTC	2 cut(s)	584, 823
BmgT120I	GGNCC	2 cut(s)	886, 1095
BmiI	GGNNCC	3 cut(s)	611, 887, 1097
BmrFI	CCNGG	5 cut(s)	99, 173, 214, 778, 882
BmrI	ACTGGG	1 cut(s)	987
BmsI	GCATC	2 cut(s)	139, 1207
BmuI	ACTGGG	1 cut(s)	987
BoxI	GACNNNNGTC	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	825
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	1192
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	2 cut(s)	173, 882
Bsa29I	ATCGAT	1 cut(s)	756
BsaI	GGTCTC	1 cut(s)	786
BsaJI	CCNNGG	4 cut(s)	306, 629, 881, 1133
Bsc4I	CCNNNNNNNGG	5 cut(s)	624, 777, 964, 1092, 1134
Bse1I	ACTGG	2 cut(s)	969, 993
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	3 cut(s)	99, 214, 778
BseCI	ATCGAT	1 cut(s)	756
BseDI	CCNNGG	4 cut(s)	306, 629, 881, 1133
BseGI	GGATG	2 cut(s)	45, 736
BseLI	CCNNNNNNNGG	5 cut(s)	624, 777, 964, 1092, 1134
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	3 cut(s)	222, 232, 332
BseNI	ACTGG	2 cut(s)	969, 993
BseRI	GAGGAG	1 cut(s)	381
BseSI	GKGCMC	1 cut(s)	1108
BshFI	GGCC	6 cut(s)	97, 628, 888, 968, 1085, 1120
BshVI	ATCGAT	1 cut(s)	756
BsiHKAI	GWGCWC	4 cut(s)	457, 556, 583, 1108
BsiSI	CCGG	2 cut(s)	173, 881
BslFI	GGGAC	2 cut(s)	155, 1081
BslI	CCNNNNNNNGG	5 cut(s)	624, 777, 964, 1092, 1134
BsmAI	GTCTC	3 cut(s)	363, 786, 1014
BsmFI	GGGAC	2 cut(s)	155, 1081
BsmI	GAATGC	3 cut(s)	935, 1188, 1200
BsnI	GGCC	6 cut(s)	97, 628, 888, 968, 1085, 1120
Bso31I	GGTCTC	1 cut(s)	786
Bsp119I	TTCGAA	1 cut(s)	1192
Bsp1286I	GDGCHC	4 cut(s)	457, 556, 583, 1108
Bsp143I	GATC	3 cut(s)	103, 221, 773
BspANI	GGCC	6 cut(s)	97, 628, 888, 968, 1085, 1120
BspCNI	CTCAG	3 cut(s)	221, 231, 331
BspDI	ATCGAT	1 cut(s)	756
BspLI	GGNNCC	3 cut(s)	611, 887, 1097
BspMI	ACCTGC	1 cut(s)	1009
BspPI	GGATC	2 cut(s)	216, 768
BspT104I	TTCGAA	1 cut(s)	1192
BspTNI	GGTCTC	1 cut(s)	786
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	969, 993
BssECI	CCNNGG	4 cut(s)	306, 629, 881, 1133
BssMI	GATC	3 cut(s)	103, 221, 773
BssT1I	CCWWGG	2 cut(s)	629, 1133
Bst2UI	CCWGG	3 cut(s)	99, 214, 778
Bst4CI	ACNGT	5 cut(s)	418, 799, 877, 1103, 1178
Bst6I	CTCTTC	4 cut(s)	110, 531, 844, 1133
BstBI	TTCGAA	1 cut(s)	1192
BstC8I	GCNNGC	6 cut(s)	261, 480, 540, 579, 626, 890
BstDEI	CTNAG	4 cut(s)	208, 218, 318, 458
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	45, 736
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	3 cut(s)	106, 224, 776
BstMAI	GTCTC	3 cut(s)	363, 786, 1014
BstMBI	GATC	3 cut(s)	103, 221, 773
BstNI	CCWGG	3 cut(s)	99, 214, 778
BstPAI	GACNNNNGTC	1 cut(s)	563
BstSCI	CCNGG	5 cut(s)	97, 171, 212, 776, 880
BstSFI	CTRYAG	1 cut(s)	942
BstSLI	GKGCMC	1 cut(s)	1108
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	2 cut(s)	221, 773
BstYI	RGATCY	2 cut(s)	221, 773
Bsu15I	ATCGAT	1 cut(s)	756
BsuRI	GGCC	6 cut(s)	97, 628, 888, 968, 1085, 1120
BsuTUI	ATCGAT	1 cut(s)	756
BtgI	CCRYGG	1 cut(s)	306
BtrI	CACGTC	2 cut(s)	584, 823
BtsCI	GGATG	2 cut(s)	45, 736
BtsI	GCAGTG	3 cut(s)	282, 845, 918
BtsIMutI	CAGTG	6 cut(s)	282, 795, 845, 918, 1108, 1183
BveI	ACCTGC	1 cut(s)	1009
Cac8I	GCNNGC	6 cut(s)	261, 480, 540, 579, 626, 890
CfoI	GCGC	1 cut(s)	448
Cfr13I	GGNCC	2 cut(s)	886, 1095
ClaI	ATCGAT	1 cut(s)	756
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	5 cut(s)	78, 878, 913, 954, 996
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviAII	CATG	3 cut(s)	167, 530, 852
CviQI	GTAC	5 cut(s)	78, 878, 913, 954, 996
DdeI	CTNAG	4 cut(s)	208, 218, 318, 458
DpnI	GATC	3 cut(s)	105, 223, 775
DpnII	GATC	3 cut(s)	103, 221, 773
EaeI	YGGCCR	1 cut(s)	966
Eam1104I	CTCTTC	4 cut(s)	110, 531, 844, 1133
EarI	CTCTTC	4 cut(s)	110, 531, 844, 1133
Ecl136II	GAGCTC	1 cut(s)	455
Eco130I	CCWWGG	2 cut(s)	629, 1133
Eco147I	AGGCCT	2 cut(s)	628, 1120
Eco24I	GRGCYC	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	786
Eco47I	GGWCC	1 cut(s)	1095
Eco53kI	GAGCTC	1 cut(s)	455
Eco57I	CTGAAG	2 cut(s)	748, 881
EcoICRI	GAGCTC	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	1095
EcoRII	CCWGG	3 cut(s)	97, 212, 776
EcoT14I	CCWWGG	2 cut(s)	629, 1133
EcoT22I	ATGCAT	1 cut(s)	1200
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	2 cut(s)	629, 1133
FaeI	CATG	3 cut(s)	170, 533, 855
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	2 cut(s)	155, 1081
FatI	CATG	3 cut(s)	166, 529, 851
FokI	GGATG	2 cut(s)	52, 743
FriOI	GRGCYC	1 cut(s)	457
FspBI	CTAG	4 cut(s)	12, 630, 1065, 1134
GlaI	GCGC	1 cut(s)	447
HaeIII	GGCC	6 cut(s)	97, 628, 888, 968, 1085, 1120
HapII	CCGG	2 cut(s)	173, 881
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	3 cut(s)	170, 533, 855
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HinfI	GANTC	2 cut(s)	206, 409
HpaII	CCGG	2 cut(s)	173, 881
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	3 cut(s)	939, 998, 1106
Hpy188I	TCNGA	6 cut(s)	108, 221, 414, 425, 767, 808
Hpy188III	TCNNGA	4 cut(s)	62, 505, 899, 1231
Hpy8I	GTNNAC	3 cut(s)	939, 998, 1106
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	6 cut(s)	19, 114, 238, 436, 723, 772
HpyCH4III	ACNGT	5 cut(s)	418, 799, 877, 1103, 1178
HpyCH4IV	ACGT	2 cut(s)	583, 822
HpyCH4V	TGCA	8 cut(s)	152, 478, 538, 701, 933, 989, 1106, 1198
HpyF3I	CTNAG	4 cut(s)	208, 218, 318, 458
HpySE526I	ACGT	2 cut(s)	583, 822
Hsp92II	CATG	3 cut(s)	170, 533, 855
HspAI	GCGC	1 cut(s)	446
Kzo9I	GATC	3 cut(s)	103, 221, 773
LweI	GCATC	2 cut(s)	139, 1207
MaeI	CTAG	4 cut(s)	12, 630, 1065, 1134
MaeII	ACGT	2 cut(s)	583, 822
MalI	GATC	3 cut(s)	105, 223, 775
MboI	GATC	3 cut(s)	103, 221, 773
MboII	GAAGA	9 cut(s)	27, 55, 127, 173, 518, 830, 831, 1150, 1235
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	2 cut(s)	221, 773
MhlI	GDGCHC	4 cut(s)	457, 556, 583, 1108
MlsI	TGGCCA	1 cut(s)	968
MluCI	AATT	5 cut(s)	159, 264, 677, 858, 1234
MluNI	TGGCCA	1 cut(s)	968
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	887
Mox20I	TGGCCA	1 cut(s)	968
Mph1103I	ATGCAT	1 cut(s)	1200
MroXI	GAANNNNTTC	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	968
MseI	TTAA	3 cut(s)	471, 720, 1080
MslI	CAYNNNNRTG	2 cut(s)	850, 1193
Msp20I	TGGCCA	1 cut(s)	968
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	2 cut(s)	173, 881
MspR9I	CCNGG	5 cut(s)	99, 173, 214, 778, 882
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	3 cut(s)	935, 1188, 1200
MvaI	CCWGG	3 cut(s)	99, 214, 778
NciI	CCSGG	2 cut(s)	173, 882
NdeII	GATC	3 cut(s)	103, 221, 773
NlaIII	CATG	3 cut(s)	170, 533, 855
NlaIV	GGNNCC	3 cut(s)	611, 887, 1097
NmeAIII	GCCGAG	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	1200
NspV	TTCGAA	1 cut(s)	1192
PaqCI	CACCTGC	1 cut(s)	1009
PceI	AGGCCT	2 cut(s)	628, 1120
PcsI	WCGNNNNNNNCGW	1 cut(s)	1198
PctI	GAATGC	3 cut(s)	935, 1188, 1200
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PpuMI	RGGWCCY	1 cut(s)	1095
PshAI	GACNNNNGTC	1 cut(s)	563
Psp124BI	GAGCTC	1 cut(s)	457
Psp5II	RGGWCCY	1 cut(s)	1095
Psp6I	CCWGG	3 cut(s)	97, 212, 776
PspGI	CCWGG	3 cut(s)	97, 212, 776
PspN4I	GGNNCC	3 cut(s)	611, 887, 1097
PspPI	GGNCC	2 cut(s)	886, 1095
PspPPI	RGGWCCY	1 cut(s)	1095
PsuI	RGATCY	2 cut(s)	221, 773
RsaI	GTAC	5 cut(s)	79, 879, 914, 955, 997
RsaNI	GTAC	5 cut(s)	78, 878, 913, 954, 996
RseI	CAYNNNNRTG	2 cut(s)	850, 1193
SacI	GAGCTC	1 cut(s)	457
SaqAI	TTAA	3 cut(s)	471, 720, 1080
Sau3AI	GATC	3 cut(s)	103, 221, 773
Sau96I	GGNCC	2 cut(s)	886, 1095
ScaI	AGTACT	1 cut(s)	79
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	5 cut(s)	99, 173, 214, 778, 882
SduI	GDGCHC	4 cut(s)	457, 556, 583, 1108
SfaNI	GCATC	2 cut(s)	139, 1207
SfcI	CTRYAG	1 cut(s)	942
SfuI	TTCGAA	1 cut(s)	1192
SinI	GGWCC	1 cut(s)	1095
SmiMI	CAYNNNNRTG	2 cut(s)	850, 1193
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	5 cut(s)	159, 264, 677, 858, 1234
SseBI	AGGCCT	2 cut(s)	628, 1120
SspI	AATATT	1 cut(s)	1161
SspMI	CTAG	4 cut(s)	12, 630, 1065, 1134
SstI	GAGCTC	1 cut(s)	457
StuI	AGGCCT	2 cut(s)	628, 1120
StyD4I	CCNGG	5 cut(s)	97, 171, 212, 776, 880
StyI	CCWWGG	2 cut(s)	629, 1133
TaaI	ACNGT	5 cut(s)	418, 799, 877, 1103, 1178
TaiI	ACGT	2 cut(s)	586, 825
TaqI	TCGA	3 cut(s)	756, 1192, 1201
TaqII	GACCGA	1 cut(s)	969
TasI	AATT	5 cut(s)	159, 264, 677, 858, 1234
TatI	WGTACW	2 cut(s)	77, 995
TauI	GCSGC	6 cut(s)	290, 293, 326, 360, 401, 829
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	3 cut(s)	471, 720, 1080
Tru9I	TTAA	3 cut(s)	471, 720, 1080
TscAI	CASTG	6 cut(s)	289, 802, 852, 925, 1108, 1183
TspDTI	ATGAA	7 cut(s)	56, 518, 678, 723, 747, 942, 1170
TspRI	CASTG	6 cut(s)	289, 802, 852, 925, 1108, 1183
VneI	GTGCAC	1 cut(s)	1104
VpaK11BI	GGWCC	1 cut(s)	1095
XapI	RAATTY	1 cut(s)	677
XmaJI	CCTAGG	2 cut(s)	629, 1133
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	4 cut(s)	12, 630, 1065, 1134
ZrmI	AGTACT	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	1200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.