MD15G1197400.v1.1

Protein of unknown function (DUF4005)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
15682748 .. 15684640
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1197400.v1.1.491

Sequence Viewer

Length: 1296 bp
ATGGGCAGAGCAACAAGGTGGCTCAAAGGCTTGTTTGGAATAAAGACCAAAGACAAATACCAAAAACCAAATTCAACTTCCGGCGACTTCAAACACAAGAAAGGCTCCAGCTTTGGCAGAGAGGATGCAGCTGCAACCCTACTCTGTCACAACCCCGCCACCATTCCACCCAACATTTCCCCTTCCGAGGCGGCCTGGCTGAGATCCTACTACACAGAAACAGAGCAGGAGCAGAACAAGCACGCAATTGCCGTGGCAGCCGCAACGGCTGCTGCTGCAGACGCCGCGGTTGCAGCTGCAAACGCGGCCGTTGAGGTCGTCCGCCTTACAAGTCACGGCAGAGGTACCATGTTCGGTGGCGGTAGAGAGAGATGGGCCGCTGTCAAAGTTCAAACTTGTTTCAGAGGCTATTTGGCTAGAAAAGCTCTGAGAGCTCTGAAAGGATTGGTGAAGTTGCAGGCATTAGTGAGAGGCTACTTAGTGAGGAAGCAGGCGACTGCAACTCTCAAAAGTATGCAAGCTCTGATTCGAGCTCAAGCAACTGTTCGTTCTCATAAAAATCGGAGACTCTTCGGCATTGAATCGAACAACAGATTTGAAATCCGTGCACGAAAATCCATGGAGAGATTTGATGACAGCAGGAGTGAGCAGACAGCTCCATCTCACAGCAGAAGGCTCTCTGCTTCTAAATTGGGAGACAGCAATTTCAACAACACTGACGAAAACCCCAAGATTGTTGAGGTCGATACAGGCAGCAGGCCGAAATCCAGGTCCCGGAGAACAAACACTTGCTCTGCATCTGAATTCTCTGACGACCCGACTTACCAACAAGCATTGTCGTCCCCAATCCTGTGTCGGGGTACTCCTGCCCGGCTATCAATCCCCGACAGCCGGAACTACCAAGATTCCGACTGGGGTCTTTCCGTGGAGGAATGCAGGATGATCTCCACGGCACAGAGCACGCCGCGGTTCATGAATTCGTGCGGCGGAGGGGCTAATAGCAATGCCACCGGCACGCCTTCGAAGAGTGTTTGTAATGAGAACTGTTTTAGAGGATATGCGCCGAATTACATGGCGAGCACTCGGTCGTTCAAGGCGAAGTTGCGGTCGCACTCTGCTCCGAAACAGAGGCCGGAGCCGGGGCCGAAGAAGCGGCTTTCACTCAACGAAATGTTGGAGTCGAGGAATAGTTTGAGTGGGGTTAGGATGCAGAGGTCCTGCTCGCAAGTGAAGGACGCCATTGTTTTCAAAAATGCTGTGATTGGGAAGCTTGAGAGATCCTCTGGATTTTGGTAG

Protein Analysis

432

Amino Acids

47.43

Weight (kDa)

10.27

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 321 - 399 2.4e-14 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 344
AccII CGCG 3 cut(s) 287, 305, 967
AclWI GGATC 2 cut(s) 198, 1272
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 3 cut(s) 70, 803, 976
AcyI GRCGYC 2 cut(s) 282, 1236
AfaI GTAC 2 cut(s) 346, 862
AfiI CCNNNNNNNGG 5 cut(s) 187, 774, 856, 891, 1139
AgsI TTSAA 8 cut(s) 75, 91, 392, 581, 599, 709, 1093, 1249
AjnI CCWGG 2 cut(s) 194, 767
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 9 cut(s) 111, 131, 296, 425, 434, 521, 533, 656, 1270
AluI AGCT 9 cut(s) 111, 131, 296, 425, 434, 521, 533, 656, 1270
Alw21I GWGCWC 5 cut(s) 436, 535, 610, 962, 1082
Alw26I GTCTC 2 cut(s) 559, 690
Alw44I GTGCAC 1 cut(s) 606
AlwI GGATC 2 cut(s) 198, 1272
AoxI GGCC 6 cut(s) 192, 306, 375, 758, 1130, 1142
ApaLI GTGCAC 1 cut(s) 606
ApeKI GCWGC 9 cut(s) 128, 131, 257, 269, 272, 275, 293, 296, 753
ApoI RAATTY 3 cut(s) 70, 803, 976
ArsI GACNNNNNNTTYG 4 cut(s) 755, 787, 1091, 1123
Asp718I GGTACC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 1063
AspS9I GGNCC 4 cut(s) 375, 771, 1142, 1215
AsuC2I CCSGG 3 cut(s) 775, 871, 1140
AsuHPI GGTGA 1 cut(s) 460
AsuII TTCGAA 1 cut(s) 1022
AvaII GGWCC 2 cut(s) 771, 1215
BaeGI GKGCMC 1 cut(s) 610
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 2 cut(s) 436, 535
Bbv12I GWGCWC 5 cut(s) 436, 535, 610, 962, 1082
BbvI GCAGC 9 cut(s) 118, 140, 256, 259, 262, 269, 283, 305, 765
BccI CCATC 2 cut(s) 366, 667
BceAI ACGGC 5 cut(s) 236, 282, 293, 352, 966
BciT130I CCWGG 2 cut(s) 196, 769
BcnI CCSGG 3 cut(s) 775, 871, 1140
BcoDI GTCTC 2 cut(s) 559, 690
BfaI CTAG 1 cut(s) 417
BfmI CTRYAG 1 cut(s) 276
BglI GCCNNNNNGGC 1 cut(s) 266
Bme1390I CCNGG 5 cut(s) 196, 769, 775, 871, 1140
Bme18I GGWCC 2 cut(s) 771, 1215
BmgT120I GGNCC 4 cut(s) 375, 771, 1142, 1215
BmiI GGNNCC 5 cut(s) 106, 346, 773, 1137, 1143
BmrFI CCNGG 5 cut(s) 196, 769, 775, 871, 1140
BmrI ACTGGG 1 cut(s) 922
BmsI GCATC 3 cut(s) 115, 806, 1197
BmuI ACTGGG 1 cut(s) 922
BoxI GACNNNNGTC 1 cut(s) 915
BplI GAGNNNNNCTC 1 cut(s) 1265
BpmI CTGGAG 1 cut(s) 91
Bpu14I TTCGAA 1 cut(s) 1022
BpuEI CTTGAG 2 cut(s) 519, 1292
BpuMI CCSGG 3 cut(s) 775, 871, 1140
BsaHI GRCGYC 2 cut(s) 282, 1236
BsaJI CCNNGG 8 cut(s) 186, 252, 285, 618, 924, 948, 965, 1139
Bsc4I CCNNNNNNNGG 5 cut(s) 187, 774, 856, 891, 1139
Bse118I RCCGGY 1 cut(s) 1010
Bse1I ACTGG 1 cut(s) 917
Bse3DI GCAATG 1 cut(s) 1009
BseBI CCWGG 2 cut(s) 196, 769
BseDI CCNNGG 8 cut(s) 186, 252, 285, 618, 924, 948, 965, 1139
BseGI GGATG 3 cut(s) 130, 945, 1212
BseLI CCNNNNNNNGG 5 cut(s) 187, 774, 856, 891, 1139
BseMI GCAATG 1 cut(s) 1009
BseMII CTCAG 2 cut(s) 191, 419
BseNI ACTGG 1 cut(s) 917
BseSI GKGCMC 1 cut(s) 610
BseX3I CGGCCG 1 cut(s) 306
BseXI GCAGC 9 cut(s) 118, 140, 256, 259, 262, 269, 283, 305, 765
Bsh1236I CGCG 3 cut(s) 287, 305, 967
Bsh1285I CGRYCG 3 cut(s) 309, 1088, 1109
BshFI GGCC 6 cut(s) 194, 308, 377, 760, 1132, 1144
BshNI GGYRCC 1 cut(s) 344
BsiEI CGRYCG 3 cut(s) 309, 1088, 1109
BsiHKAI GWGCWC 5 cut(s) 436, 535, 610, 962, 1082
BsiSI CCGG 7 cut(s) 81, 775, 871, 892, 1011, 1133, 1139
BslFI GGGAC 2 cut(s) 757, 826
BslI CCNNNNNNNGG 5 cut(s) 187, 774, 856, 891, 1139
BsmAI GTCTC 2 cut(s) 559, 690
BsmFI GGGAC 2 cut(s) 757, 826
BsmI GAATGC 1 cut(s) 938
BsnI GGCC 6 cut(s) 194, 308, 377, 760, 1132, 1144
Bsp119I TTCGAA 1 cut(s) 1022
Bsp1286I GDGCHC 5 cut(s) 436, 535, 610, 962, 1082
Bsp143I GATC 3 cut(s) 203, 942, 1277
Bsp19I CCATGG 1 cut(s) 618
BspANI GGCC 6 cut(s) 194, 308, 377, 760, 1132, 1144
BspCNI CTCAG 2 cut(s) 192, 420
BspFNI CGCG 3 cut(s) 287, 305, 967
BspHI TCATGA 1 cut(s) 972
BspLI GGNNCC 5 cut(s) 106, 346, 773, 1137, 1143
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 2 cut(s) 198, 1272
BspT104I TTCGAA 1 cut(s) 1022
BspT107I GGYRCC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 1009
BsrFI RCCGGY 1 cut(s) 1010
BsrI ACTGG 1 cut(s) 917
BssAI RCCGGY 1 cut(s) 1010
BssECI CCNNGG 8 cut(s) 186, 252, 285, 618, 924, 948, 965, 1139
BssMI GATC 3 cut(s) 203, 942, 1277
BssNI GRCGYC 2 cut(s) 282, 1236
BssT1I CCWWGG 1 cut(s) 618
Bst2UI CCWGG 2 cut(s) 196, 769
Bst4CI ACNGT 2 cut(s) 544, 1046
Bst6I CTCTTC 2 cut(s) 575, 1019
BstACI GRCGYC 2 cut(s) 282, 1236
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBI TTCGAA 1 cut(s) 1022
BstC8I GCNNGC 9 cut(s) 243, 459, 492, 519, 758, 962, 1016, 1078, 1223
BstDEI CTNAG 3 cut(s) 200, 428, 478
BstDSI CCRYGG 6 cut(s) 252, 285, 618, 924, 948, 965
BstF5I GGATG 3 cut(s) 130, 945, 1212
BstFNI CGCG 3 cut(s) 287, 305, 967
BstHHI GCGC 1 cut(s) 1063
BstKTI GATC 3 cut(s) 206, 945, 1280
BstMAI GTCTC 2 cut(s) 559, 690
BstMBI GATC 3 cut(s) 203, 942, 1277
BstMCI CGRYCG 3 cut(s) 309, 1088, 1109
BstNI CCWGG 2 cut(s) 196, 769
BstPAI GACNNNNGTC 1 cut(s) 915
BstSCI CCNGG 5 cut(s) 194, 767, 773, 869, 1138
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 610
BstUI CGCG 3 cut(s) 287, 305, 967
BstV1I GCAGC 9 cut(s) 118, 140, 256, 259, 262, 269, 283, 305, 765
BstX2I RGATCY 2 cut(s) 203, 1277
BstYI RGATCY 2 cut(s) 203, 1277
BstZI CGGCCG 1 cut(s) 306
BsuRI GGCC 6 cut(s) 194, 308, 377, 760, 1132, 1144
BtgI CCRYGG 6 cut(s) 252, 285, 618, 924, 948, 965
BtsCI GGATG 3 cut(s) 130, 945, 1212
BtsIMutI CAGTG 1 cut(s) 714
Cac8I GCNNGC 9 cut(s) 243, 459, 492, 519, 758, 962, 1016, 1078, 1223
CciI TCATGA 1 cut(s) 972
CfoI GCGC 1 cut(s) 1063
Cfr10I RCCGGY 1 cut(s) 1010
Cfr13I GGNCC 4 cut(s) 375, 771, 1142, 1215
Cfr42I CCGCGG 2 cut(s) 288, 968
CseI GACGC 2 cut(s) 290, 1244
Csp6I GTAC 2 cut(s) 345, 861
CspCI CAANNNNNGTGG 2 cut(s) 234, 269
CviAII CATG 4 cut(s) 349, 619, 973, 1072
CviQI GTAC 2 cut(s) 345, 861
DdeI CTNAG 3 cut(s) 200, 428, 478
DpnI GATC 3 cut(s) 205, 944, 1279
DpnII GATC 3 cut(s) 203, 942, 1277
EaeI YGGCCR 1 cut(s) 306
EagI CGGCCG 1 cut(s) 306
Eam1104I CTCTTC 2 cut(s) 575, 1019
EarI CTCTTC 2 cut(s) 575, 1019
EciI GGCGGA 2 cut(s) 311, 1002
Ecl136II GAGCTC 2 cut(s) 434, 533
EclXI CGGCCG 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 618
Eco24I GRGCYC 2 cut(s) 436, 535
Eco47I GGWCC 2 cut(s) 771, 1215
Eco52I CGGCCG 1 cut(s) 306
Eco53kI GAGCTC 2 cut(s) 434, 533
EcoICRI GAGCTC 2 cut(s) 434, 533
EcoO109I RGGNCCY 2 cut(s) 771, 1215
EcoRI GAATTC 2 cut(s) 803, 976
EcoRII CCWGG 2 cut(s) 194, 767
EcoT14I CCWWGG 1 cut(s) 618
EcoT38I GRGCYC 2 cut(s) 436, 535
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 4 cut(s) 352, 622, 976, 1075
FaiI YATR 7 cut(s) 350, 515, 555, 620, 974, 1059, 1073
FaqI GGGAC 2 cut(s) 757, 826
FatI CATG 4 cut(s) 348, 618, 972, 1071
FauI CCCGC 1 cut(s) 163
FokI GGATG 3 cut(s) 137, 952, 1219
FriOI GRGCYC 2 cut(s) 436, 535
FspBI CTAG 1 cut(s) 417
GlaI GCGC 1 cut(s) 1062
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 6 cut(s) 194, 308, 377, 760, 1132, 1144
HapII CCGG 7 cut(s) 81, 775, 871, 892, 1011, 1133, 1139
HgaI GACGC 2 cut(s) 290, 1244
HhaI GCGC 1 cut(s) 1063
Hin1I GRCGYC 2 cut(s) 282, 1236
Hin1II CATG 4 cut(s) 352, 622, 976, 1075
Hin6I GCGC 1 cut(s) 1061
HinP1I GCGC 1 cut(s) 1061
HindIII AAGCTT 1 cut(s) 1268
HinfI GANTC 5 cut(s) 526, 567, 581, 905, 1178
HpaII CCGG 7 cut(s) 81, 775, 871, 892, 1011, 1133, 1139
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 1 cut(s) 608
Hpy188III TCNNGA 2 cut(s) 973, 1284
Hpy8I GTNNAC 1 cut(s) 608
HpyAV CCTTC 4 cut(s) 192, 666, 1029, 1225
HpyCH4III ACNGT 2 cut(s) 544, 1046
HpyF3I CTNAG 3 cut(s) 200, 428, 478
Hsp92I GRCGYC 2 cut(s) 282, 1236
Hsp92II CATG 4 cut(s) 352, 622, 976, 1075
HspAI GCGC 1 cut(s) 1061
KpnI GGTACC 1 cut(s) 348
KspI CCGCGG 2 cut(s) 288, 968
Kzo9I GATC 3 cut(s) 203, 942, 1277
LmnI GCTCC 5 cut(s) 110, 229, 661, 1123, 1135
Lsp1109I GCAGC 9 cut(s) 118, 140, 256, 259, 262, 269, 283, 305, 765
LweI GCATC 3 cut(s) 115, 806, 1197
MaeI CTAG 1 cut(s) 417
MaeIII GTNAC 2 cut(s) 146, 332
MalI GATC 3 cut(s) 205, 944, 1279
MboI GATC 3 cut(s) 203, 942, 1277
MboII GAAGA 3 cut(s) 562, 1036, 1159
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 2 cut(s) 203, 1277
MhlI GDGCHC 5 cut(s) 436, 535, 610, 962, 1082
MluCI AATT 7 cut(s) 70, 246, 689, 703, 803, 976, 1066
MlyI GAGTC 2 cut(s) 561, 1187
MmeI TCCRAC 2 cut(s) 933, 1155
MspA1I CMGCKG 5 cut(s) 131, 287, 296, 380, 967
MspI CCGG 7 cut(s) 81, 775, 871, 892, 1011, 1133, 1139
MspR9I CCNGG 5 cut(s) 196, 769, 775, 871, 1140
MunI CAATTG 1 cut(s) 246
Mva1269I GAATGC 1 cut(s) 938
MvaI CCWGG 2 cut(s) 196, 769
MvnI CGCG 3 cut(s) 287, 305, 967
NciI CCSGG 3 cut(s) 775, 871, 1140
NcoI CCATGG 1 cut(s) 618
NdeII GATC 3 cut(s) 203, 942, 1277
NlaIII CATG 4 cut(s) 352, 622, 976, 1075
NlaIV GGNNCC 5 cut(s) 106, 346, 773, 1137, 1143
NmuCI GTSAC 2 cut(s) 146, 332
NspV TTCGAA 1 cut(s) 1022
PagI TCATGA 1 cut(s) 972
PcsI WCGNNNNNNNCGW 2 cut(s) 249, 1094
PctI GAATGC 1 cut(s) 938
PfeI GAWTC 3 cut(s) 526, 581, 905
PfoI TCCNGGA 1 cut(s) 773
PleI GAGTC 2 cut(s) 561, 1186
PpsI GAGTC 2 cut(s) 561, 1186
PpuMI RGGWCCY 2 cut(s) 771, 1215
PshAI GACNNNNGTC 1 cut(s) 915
Psp124BI GAGCTC 2 cut(s) 436, 535
Psp5II RGGWCCY 2 cut(s) 771, 1215
Psp6I CCWGG 2 cut(s) 194, 767
PspGI CCWGG 2 cut(s) 194, 767
PspN4I GGNNCC 5 cut(s) 106, 346, 773, 1137, 1143
PspPI GGNCC 4 cut(s) 375, 771, 1142, 1215
PspPPI RGGWCCY 2 cut(s) 771, 1215
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 2 cut(s) 203, 1277
PvuII CAGCTG 2 cut(s) 131, 296
RsaI GTAC 2 cut(s) 346, 862
RsaNI GTAC 2 cut(s) 345, 861
SacI GAGCTC 2 cut(s) 436, 535
SacII CCGCGG 2 cut(s) 288, 968
Sau3AI GATC 3 cut(s) 203, 942, 1277
Sau96I GGNCC 4 cut(s) 375, 771, 1142, 1215
SchI GAGTC 2 cut(s) 561, 1187
ScrFI CCNGG 5 cut(s) 196, 769, 775, 871, 1140
SduI GDGCHC 5 cut(s) 436, 535, 610, 962, 1082
SfaNI GCATC 3 cut(s) 115, 806, 1197
SfcI CTRYAG 1 cut(s) 276
Sfr303I CCGCGG 2 cut(s) 288, 968
SfuI TTCGAA 1 cut(s) 1022
SgrBI CCGCGG 2 cut(s) 288, 968
SinI GGWCC 2 cut(s) 771, 1215
SmlI CTYRAG 2 cut(s) 534, 1271
SmoI CTYRAG 2 cut(s) 534, 1271
Sse9I AATT 7 cut(s) 70, 246, 689, 703, 803, 976, 1066
SspMI CTAG 1 cut(s) 417
SstI GAGCTC 2 cut(s) 436, 535
StyD4I CCNGG 5 cut(s) 194, 767, 773, 869, 1138
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 2 cut(s) 544, 1046
TaqI TCGA 5 cut(s) 529, 584, 744, 1022, 1181
TaqII GACCGA 1 cut(s) 1074
TasI AATT 7 cut(s) 70, 246, 689, 703, 803, 976, 1066
TauI GCSGC 8 cut(s) 194, 263, 287, 308, 380, 967, 987, 1156
TfiI GAWTC 3 cut(s) 526, 581, 905
TscAI CASTG 1 cut(s) 721
TseFI GTSAC 2 cut(s) 146, 332
TseI GCWGC 9 cut(s) 128, 131, 257, 269, 272, 275, 293, 296, 753
Tsp45I GTSAC 2 cut(s) 146, 332
TspDTI ATGAA 2 cut(s) 961, 989
TspGWI ACGGA 2 cut(s) 593, 913
TspRI CASTG 1 cut(s) 721
VneI GTGCAC 1 cut(s) 606
VpaK11BI GGWCC 2 cut(s) 771, 1215
XapI RAATTY 3 cut(s) 70, 803, 976
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.