pycom09g11870

iq-domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
10052216 .. 10054115
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g11870.2

Sequence Viewer

Length: 1224 bp
ATGGGGAGAGCTACAAAATGGTTGAAGGGCTTGCTGGGGATGAAGAGAGAGAAACACCACGTCGACAACACCAGCACCGTGTCCAGCGACCGGAAGGAGAAGAAAAGGTGGAGCTTTGCCAAGTCAGGGAAAGACATTAACACCAATCTTCCGCCGAATTTTCCTGTCCCTGCTGACTCTGCCTGGCTCAGATCCTATCTTGCCGAGTCGGAGAAGGAGCAGAACAAGCACGCAATTGCAGTGGCTGCGGCCACCGCAGCCGCTGCTGATGCCGCTGTGGCCGCCGCACAGGCGGCTGTGGCTGTTGTGAGGCTGACAAGTCAAGGCGGCCATGGCGGTGGAGGCGGGATCATGTTTGGGAAAAGAGAGAGATGGGCTGCAATGAAGATTCAAACAGTTTTCAGAGGCTATTTGGCGAGGAAGGCGCACCGTGCTCTTAGAGGACTGGTTAAGTTGCAGGCTCTTGTTAGAGGCTTTCTTGTCCGGAAACGGGCTGCTGCTACTCTTTACAGTATGCAAGCTCTTTTTAGAGCACAGACTACTGTCCGATACCAGCGTGCGCGTCGTTCTTTCAATAAAGAGAATAGGTTCCTACCCGAAATCAATGCCCGGAAGTCTGTTGAAAGATTTGAAGATGCAAGAAGTGAATTTTATAGCAGGTGGCTATCTGCAACTTATGAAACTTCGGTTGATAGCTTTGATGAAAGCCCGAAAATTGTGGAAATTGACACATTCAAGCCGAGATCCAGGTCTCGTAGATTCAACACCATATTATCTGATCGTGGCGAAGACCTGCATTACCAAACAATCTCCTCACCGCTGCCCTGCCCAATGCCAACTCGTATCTCTATACCTGATAGCCAGAAACCTCAAGATTTTGAATGGTACTTCAATGGTGATGAATGCAAGTTCTCGACTGCCCATAACACTCCACGGTTTGCCACCTCTTTTCGTTCTAATGCTCCCGGCACACCATCTAAAAGTGTTTGTGGAGACAGCTTCTTTCGGCCTTACTCAAACTTCCCAAACTACATGTCAAGCACTCAGTCATTTAATGCCAAGTCAAGATCCCACAGCGCCCCGAAGCAAAGGCCGGAACCAGGGCCTAAGAAGAGGCTTTCGCTTAACGAAATGATGGCAGCAAGGAACAGCATCTGCAGCATTCGAATGCATCGATCGTGCAATCAAGTCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAATAA

Protein Analysis

408

Amino Acids

46.02

Weight (kDa)

9.98

Isoelectric Point (pI)

64.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 648
Acc36I ACCTGC 2 cut(s) 648, 801
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 562
AccIII TCCGGA 1 cut(s) 483
AclWI GGATC 4 cut(s) 186, 356, 738, 1062
AcoI YGGCCR 3 cut(s) 249, 279, 328
AcsI RAATTY 2 cut(s) 157, 647
AfaI GTAC 1 cut(s) 887
AfiI CCNNNNNNNGG 4 cut(s) 90, 126, 490, 1100
AflIII ACRYGT 1 cut(s) 1032
AgsI TTSAA 9 cut(s) 25, 392, 574, 623, 632, 736, 763, 881, 892
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 3 cut(s) 182, 746, 1099
AluBI AGCT 5 cut(s) 11, 114, 521, 696, 999
AluI AGCT 5 cut(s) 11, 114, 521, 696, 999
Alw21I GWGCWC 2 cut(s) 436, 535
Alw26I GTCTC 2 cut(s) 756, 987
AlwI GGATC 4 cut(s) 186, 356, 738, 1062
AlwNI CAGNNNCTG 3 cut(s) 245, 263, 1155
Aor13HI TCCGGA 1 cut(s) 483
AoxI GGCC 6 cut(s) 249, 279, 328, 1007, 1091, 1103
ApeKI GCWGC 9 cut(s) 245, 257, 263, 377, 494, 497, 820, 1139, 1158
ApoI RAATTY 2 cut(s) 157, 647
ArsI GACNNNNNNTTYG 2 cut(s) 1019, 1051
Asp700I GAANNNNTTC 1 cut(s) 587
AspLEI GCGC 3 cut(s) 427, 562, 1079
AspS9I GGNCC 1 cut(s) 1103
AsuC2I CCSGG 2 cut(s) 610, 966
AsuHPI GGTGA 2 cut(s) 807, 908
AsuII TTCGAA 1 cut(s) 1165
BaeI ACNNNNGTAYC 2 cut(s) 541, 574
BbsI GAAGAC 1 cut(s) 795
Bbv12I GWGCWC 2 cut(s) 436, 535
BbvI GCAGC 9 cut(s) 232, 250, 269, 364, 481, 484, 807, 1151, 1170
BccI CCATC 3 cut(s) 366, 982, 1129
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 3 cut(s) 184, 748, 1101
BcnI CCSGG 2 cut(s) 610, 966
BcoDI GTCTC 2 cut(s) 756, 987
BfmI CTRYAG 1 cut(s) 1156
BfoI RGCGCY 1 cut(s) 1080
BfuAI ACCTGC 2 cut(s) 648, 801
BglI GCCNNNNNGGC 2 cut(s) 278, 290
Bme1390I CCNGG 5 cut(s) 184, 610, 748, 966, 1101
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 1103
BmiI GGNNCC 2 cut(s) 590, 1098
BmrFI CCNGG 5 cut(s) 184, 610, 748, 966, 1101
BmsI GCATC 4 cut(s) 259, 625, 1161, 1180
BoxI GACNNNNGTC 1 cut(s) 542
BpiI GAAGAC 1 cut(s) 795
Bpu14I TTCGAA 1 cut(s) 1165
BpuEI CTTGAG 1 cut(s) 855
BpuMI CCSGG 2 cut(s) 610, 966
Bsa29I ATCGAT 1 cut(s) 1174
BsaI GGTCTC 1 cut(s) 756
BsaJI CCNNGG 3 cut(s) 331, 932, 1100
BsaWI WCCGGW 2 cut(s) 90, 483
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 126, 490, 1100
Bse1I ACTGG 1 cut(s) 450
Bse3DI GCAATG 1 cut(s) 387
BseAI TCCGGA 1 cut(s) 483
BseBI CCWGG 3 cut(s) 184, 748, 1101
BseCI ATCGAT 1 cut(s) 1174
BseDI CCNNGG 3 cut(s) 331, 932, 1100
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 4 cut(s) 90, 126, 490, 1100
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 202, 1058
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 802
BseXI GCAGC 9 cut(s) 232, 250, 269, 364, 481, 484, 807, 1151, 1170
BseYI CCCAGC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 562
Bsh1285I CGRYCG 2 cut(s) 91, 1178
BshFI GGCC 6 cut(s) 251, 281, 330, 1009, 1093, 1105
BshVI ATCGAT 1 cut(s) 1174
BsiEI CGRYCG 2 cut(s) 91, 1178
BsiHKAI GWGCWC 2 cut(s) 436, 535
BsiSI CCGG 5 cut(s) 91, 484, 610, 966, 1094
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 4 cut(s) 90, 126, 490, 1100
BsmAI GTCTC 2 cut(s) 756, 987
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 3 cut(s) 908, 1161, 1173
BsnI GGCC 6 cut(s) 251, 281, 330, 1009, 1093, 1105
Bso31I GGTCTC 1 cut(s) 756
Bsp119I TTCGAA 1 cut(s) 1165
Bsp1286I GDGCHC 2 cut(s) 436, 535
Bsp13I TCCGGA 1 cut(s) 483
Bsp143I GATC 6 cut(s) 191, 348, 743, 778, 1067, 1175
Bsp19I CCATGG 1 cut(s) 331
BspANI GGCC 6 cut(s) 251, 281, 330, 1009, 1093, 1105
BspCNI CTCAG 2 cut(s) 201, 1057
BspDI ATCGAT 1 cut(s) 1174
BspEI TCCGGA 1 cut(s) 483
BspFNI CGCG 1 cut(s) 562
BspLI GGNNCC 2 cut(s) 590, 1098
BspMAI CTGCAG 1 cut(s) 1160
BspMI ACCTGC 2 cut(s) 648, 801
BspPI GGATC 4 cut(s) 186, 356, 738, 1062
BspT104I TTCGAA 1 cut(s) 1165
BspTNI GGTCTC 1 cut(s) 756
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 1 cut(s) 450
BssECI CCNNGG 3 cut(s) 331, 932, 1100
BssMI GATC 6 cut(s) 191, 348, 743, 778, 1067, 1175
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 3 cut(s) 184, 748, 1101
Bst4CI ACNGT 6 cut(s) 79, 397, 431, 512, 544, 936
Bst6I CTCTTC 2 cut(s) 38, 1106
BstAPI GCANNNNNTGC 2 cut(s) 245, 263
BstBI TTCGAA 1 cut(s) 1165
BstC8I GCNNGC 5 cut(s) 32, 231, 459, 519, 558
BstDEI CTNAG 4 cut(s) 188, 437, 1044, 1107
BstDSI CCRYGG 2 cut(s) 331, 932
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 1080
BstHHI GCGC 3 cut(s) 427, 562, 1079
BstKTI GATC 6 cut(s) 194, 351, 746, 781, 1070, 1178
BstMAI GTCTC 2 cut(s) 756, 987
BstMBI GATC 6 cut(s) 191, 348, 743, 778, 1067, 1175
BstMCI CGRYCG 2 cut(s) 91, 1178
BstNI CCWGG 3 cut(s) 184, 748, 1101
BstNSI RCATGY 1 cut(s) 1036
BstPAI GACNNNNGTC 1 cut(s) 542
BstSCI CCNGG 5 cut(s) 182, 608, 746, 964, 1099
BstSFI CTRYAG 1 cut(s) 1156
BstUI CGCG 1 cut(s) 562
BstV1I GCAGC 9 cut(s) 232, 250, 269, 364, 481, 484, 807, 1151, 1170
BstV2I GAAGAC 1 cut(s) 795
BstX2I RGATCY 3 cut(s) 191, 743, 1067
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 3 cut(s) 191, 743, 1067
Bsu15I ATCGAT 1 cut(s) 1174
BsuRI GGCC 6 cut(s) 251, 281, 330, 1009, 1093, 1105
BsuTUI ATCGAT 1 cut(s) 1174
BtgI CCRYGG 2 cut(s) 331, 932
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 2 cut(s) 648, 801
Cac8I GCNNGC 5 cut(s) 32, 231, 459, 519, 558
CaiI CAGNNNCTG 3 cut(s) 245, 263, 1155
CfoI GCGC 3 cut(s) 427, 562, 1079
Cfr13I GGNCC 1 cut(s) 1103
ClaI ATCGAT 1 cut(s) 1174
CseI GACGC 1 cut(s) 551
Csp6I GTAC 1 cut(s) 886
CspCI CAANNNNNGTGG 2 cut(s) 222, 257
CviAII CATG 3 cut(s) 332, 352, 1033
CviQI GTAC 1 cut(s) 886
DdeI CTNAG 4 cut(s) 188, 437, 1044, 1107
DpnI GATC 6 cut(s) 193, 350, 745, 780, 1069, 1177
DpnII GATC 6 cut(s) 191, 348, 743, 778, 1067, 1175
EaeI YGGCCR 3 cut(s) 249, 279, 328
Eam1104I CTCTTC 2 cut(s) 38, 1106
EarI CTCTTC 2 cut(s) 38, 1106
EciI GGCGGA 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 756
EcoO109I RGGNCCY 1 cut(s) 1103
EcoRII CCWGG 3 cut(s) 182, 746, 1099
EcoT14I CCWWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 1173
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 3 cut(s) 335, 355, 1036
FaiI YATR 9 cut(s) 333, 353, 515, 654, 678, 770, 851, 924, 1034
FaqI GGGAC 1 cut(s) 152
FatI CATG 3 cut(s) 331, 351, 1032
FauI CCCGC 1 cut(s) 338
FblI GTMKAC 1 cut(s) 63
FokI GGATG 1 cut(s) 52
GlaI GCGC 3 cut(s) 426, 561, 1078
GsaI CCCAGC 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 1080
HaeIII GGCC 6 cut(s) 251, 281, 330, 1009, 1093, 1105
HapII CCGG 5 cut(s) 91, 484, 610, 966, 1094
HgaI GACGC 1 cut(s) 551
HhaI GCGC 3 cut(s) 427, 562, 1079
Hin1II CATG 3 cut(s) 335, 355, 1036
Hin6I GCGC 3 cut(s) 425, 560, 1077
HinP1I GCGC 3 cut(s) 425, 560, 1077
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 4 cut(s) 176, 206, 388, 759
HpaII CCGG 5 cut(s) 91, 484, 610, 966, 1094
HphI GGTGA 2 cut(s) 807, 908
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 5 cut(s) 191, 211, 404, 548, 778
Hpy188III TCNNGA 4 cut(s) 484, 872, 913, 1065
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 2 cut(s) 65, 567
HpyAV CCTTC 4 cut(s) 19, 88, 208, 415
HpyCH4III ACNGT 6 cut(s) 79, 397, 431, 512, 544, 936
HpyCH4IV ACGT 1 cut(s) 60
HpyF3I CTNAG 4 cut(s) 188, 437, 1044, 1107
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 3 cut(s) 335, 355, 1036
HspAI GCGC 3 cut(s) 425, 560, 1077
Kpn2I TCCGGA 1 cut(s) 483
Kzo9I GATC 6 cut(s) 191, 348, 743, 778, 1067, 1175
LmnI GCTCC 3 cut(s) 111, 217, 967
Lsp1109I GCAGC 9 cut(s) 232, 250, 269, 364, 481, 484, 807, 1151, 1170
LweI GCATC 4 cut(s) 259, 625, 1161, 1180
MaeII ACGT 1 cut(s) 60
MalI GATC 6 cut(s) 193, 350, 745, 780, 1069, 1177
MboI GATC 6 cut(s) 191, 348, 743, 778, 1067, 1175
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 3 cut(s) 191, 743, 1067
MhlI GDGCHC 2 cut(s) 436, 535
MluCI AATT 5 cut(s) 157, 234, 647, 714, 723
MlyI GAGTC 2 cut(s) 170, 215
MmeI TCCRAC 1 cut(s) 189
Mph1103I ATGCAT 1 cut(s) 1173
MroI TCCGGA 1 cut(s) 483
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 4 cut(s) 138, 450, 1053, 1125
MslI CAYNNNNRTG 2 cut(s) 336, 1166
MspA1I CMGCKG 3 cut(s) 263, 275, 820
MspI CCGG 5 cut(s) 91, 484, 610, 966, 1094
MspR9I CCNGG 5 cut(s) 184, 610, 748, 966, 1101
MunI CAATTG 1 cut(s) 234
Mva1269I GAATGC 3 cut(s) 908, 1161, 1173
MvaI CCWGG 3 cut(s) 184, 748, 1101
MvnI CGCG 1 cut(s) 562
NciI CCSGG 2 cut(s) 610, 966
NcoI CCATGG 1 cut(s) 331
NdeII GATC 6 cut(s) 191, 348, 743, 778, 1067, 1175
NlaIII CATG 3 cut(s) 335, 355, 1036
NlaIV GGNNCC 2 cut(s) 590, 1098
NmeAIII GCCGAG 2 cut(s) 229, 765
NsiI ATGCAT 1 cut(s) 1173
NspI RCATGY 1 cut(s) 1036
NspV TTCGAA 1 cut(s) 1165
PaqCI CACCTGC 1 cut(s) 648
PciI ACATGT 1 cut(s) 1032
PcsI WCGNNNNNNNCGW 1 cut(s) 1171
PctI GAATGC 3 cut(s) 908, 1161, 1173
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 2 cut(s) 388, 759
Ple19I CGATCG 1 cut(s) 1178
PleI GAGTC 2 cut(s) 170, 214
PpsI GAGTC 2 cut(s) 170, 214
PscI ACATGT 1 cut(s) 1032
PshAI GACNNNNGTC 1 cut(s) 542
Psp6I CCWGG 3 cut(s) 182, 746, 1099
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 3 cut(s) 182, 746, 1099
PspN4I GGNNCC 2 cut(s) 590, 1098
PspPI GGNCC 1 cut(s) 1103
PstI CTGCAG 1 cut(s) 1160
PstNI CAGNNNCTG 3 cut(s) 245, 263, 1155
PsuI RGATCY 3 cut(s) 191, 743, 1067
PvuI CGATCG 1 cut(s) 1178
RsaI GTAC 1 cut(s) 887
RsaNI GTAC 1 cut(s) 886
RseI CAYNNNNRTG 2 cut(s) 336, 1166
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 4 cut(s) 138, 450, 1053, 1125
Sau3AI GATC 6 cut(s) 191, 348, 743, 778, 1067, 1175
Sau96I GGNCC 1 cut(s) 1103
SchI GAGTC 2 cut(s) 170, 215
ScrFI CCNGG 5 cut(s) 184, 610, 748, 966, 1101
SduI GDGCHC 2 cut(s) 436, 535
SfaNI GCATC 4 cut(s) 259, 625, 1161, 1180
SfcI CTRYAG 1 cut(s) 1156
SfuI TTCGAA 1 cut(s) 1165
SmiMI CAYNNNNRTG 2 cut(s) 336, 1166
SmlI CTYRAG 1 cut(s) 870
SmoI CTYRAG 1 cut(s) 870
Sse9I AATT 5 cut(s) 157, 234, 647, 714, 723
StyD4I CCNGG 5 cut(s) 182, 608, 746, 964, 1099
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 6 cut(s) 79, 397, 431, 512, 544, 936
TaiI ACGT 1 cut(s) 63
TaqI TCGA 4 cut(s) 63, 914, 1165, 1174
TasI AATT 5 cut(s) 157, 234, 647, 714, 723
TauI GCSGC 7 cut(s) 251, 263, 275, 284, 287, 296, 330
TfiI GAWTC 2 cut(s) 388, 759
Tru1I TTAA 4 cut(s) 138, 450, 1053, 1125
Tru9I TTAA 4 cut(s) 138, 450, 1053, 1125
TscAI CASTG 1 cut(s) 246
TseI GCWGC 9 cut(s) 245, 257, 263, 377, 494, 497, 820, 1139, 1158
TspDTI ATGAA 5 cut(s) 56, 398, 693, 717, 915
TspRI CASTG 1 cut(s) 246
XapI RAATTY 2 cut(s) 157, 647
XceI RCATGY 1 cut(s) 1036
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.