Protein of unknown function (DUF4005)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16490 |
| fragaria_vesca | FvH4_1g06300 FvH4_6g32490 FvH4_6g32490 FvH4_6g32490 |
| malus_domestica | MD02G1066900.v1.1 MD09G1201900.v1.1 MD15G1197400.v1.1 MD17G1182000.v1.1 |
| prunus_persica | Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.3G057500_v2.0.a1 Prupe.7G218500_v2.0.a1 Prupe.7G218500_v2.0.a1 |
| pyrus_communis | pycom02g05290 pycom09g11870 pycom17g19160 |
| rosa_chinensis | RchiOBHm_Chr2g0092031 RchiOBHm_Chr2g0140781 |
| rosa_laevigata | RLG00000016269 RLG00000019897 |
| rosa_multiflora | Rmu_sc0000524.1_g000003 Rmu_sc0003342.1_g000033 |
| rosa_roxburghii | Rroxscaffold_2G00104500 Rroxscaffold_2G00149540 |
| rosa_rugosa | Rorug02G0022400 Rorug02G0022400 Rorug02G0365100 Rorug02G0365200 |
| rosa_samantha | Rh2AG068000 Rh2AG416500 Rh2BG067400 Rh2BG426000 Rh2CG068700 Rh2CG402700 Rh2DG067000 Rh2DG436000 |
| rosa_wichuraiana | Rw2G005310 Rw2G034070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 859 |
| AccB1I | GGYRCC | 1 cut(s) | 335 |
| AccII | CGCG | 2 cut(s) | 296, 952 |
| AciI | CCGC | 8 cut(s) | 261, 264, 296, 305, 313, 369, 950, 952 |
| AclWI | GGATC | 1 cut(s) | 859 |
| AcoI | YGGCCR | 2 cut(s) | 258, 297 |
| AcsI | RAATTY | 4 cut(s) | 70, 791, 880, 961 |
| AcuI | CTGAAG | 1 cut(s) | 198 |
| AcyI | GRCGYC | 1 cut(s) | 702 |
| AfaI | GTAC | 1 cut(s) | 62 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 845, 876, 1080, 1115 |
| AgsI | TTSAA | 9 cut(s) | 25, 75, 88, 383, 587, 605, 999, 1069, 1225 |
| AjnI | CCWGG | 1 cut(s) | 985 |
| Alw21I | GWGCWC | 6 cut(s) | 427, 526, 616, 657, 1058, 1096 |
| Alw26I | GTCTC | 2 cut(s) | 1089, 1123 |
| Alw44I | GTGCAC | 1 cut(s) | 612 |
| AlwI | GGATC | 1 cut(s) | 859 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 284 |
| Ama87I | CYCGRG | 1 cut(s) | 552 |
| AoxI | GGCC | 9 cut(s) | 258, 297, 366, 405, 483, 749, 1071, 1106, 1118 |
| ApaLI | GTGCAC | 1 cut(s) | 612 |
| ApeKI | GCWGC | 7 cut(s) | 182, 248, 251, 266, 275, 284, 287 |
| ApoI | RAATTY | 4 cut(s) | 70, 791, 880, 961 |
| AseI | ATTAAT | 1 cut(s) | 1218 |
| AspLEI | GCGC | 1 cut(s) | 454 |
| AspS9I | GGNCC | 5 cut(s) | 366, 406, 848, 1118, 1254 |
| AsuC2I | CCSGG | 1 cut(s) | 856 |
| AsuHPI | GGTGA | 4 cut(s) | 162, 310, 451, 1189 |
| AvaI | CYCGRG | 1 cut(s) | 552 |
| AvaII | GGWCC | 2 cut(s) | 848, 1254 |
| BaeGI | GKGCMC | 1 cut(s) | 616 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 768, 801 |
| BanI | GGYRCC | 1 cut(s) | 335 |
| BanII | GRGCYC | 2 cut(s) | 427, 561 |
| BbsI | GAAGAC | 1 cut(s) | 819 |
| Bbv12I | GWGCWC | 6 cut(s) | 427, 526, 616, 657, 1058, 1096 |
| BbvI | GCAGC | 7 cut(s) | 194, 238, 253, 260, 271, 287, 299 |
| BccI | CCATC | 2 cut(s) | 181, 357 |
| BceAI | ACGGC | 3 cut(s) | 273, 284, 504 |
| BciT130I | CCWGG | 1 cut(s) | 987 |
| BcnI | CCSGG | 1 cut(s) | 856 |
| BcoDI | GTCTC | 2 cut(s) | 1089, 1123 |
| BfaI | CTAG | 4 cut(s) | 455, 759, 905, 975 |
| BfmI | CTRYAG | 1 cut(s) | 285 |
| BfoI | RGCGCY | 1 cut(s) | 455 |
| BfuAI | ACCTGC | 1 cut(s) | 859 |
| Bme1390I | CCNGG | 2 cut(s) | 856, 987 |
| Bme18I | GGWCC | 2 cut(s) | 848, 1254 |
| BmeT110I | CYCGRG | 1 cut(s) | 552 |
| BmgT120I | GGNCC | 5 cut(s) | 366, 406, 848, 1118, 1254 |
| BmiI | GGNNCC | 1 cut(s) | 337 |
| BmrFI | CCNGG | 2 cut(s) | 856, 987 |
| BmrI | ACTGGG | 2 cut(s) | 654, 907 |
| BmsI | GCATC | 4 cut(s) | 112, 262, 1173, 1201 |
| BmuI | ACTGGG | 2 cut(s) | 654, 907 |
| BpiI | GAAGAC | 1 cut(s) | 819 |
| BpmI | CTGGAG | 1 cut(s) | 930 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1098, 1206 |
| BpuMI | CCSGG | 1 cut(s) | 856 |
| Bsa29I | ATCGAT | 1 cut(s) | 863 |
| BsaHI | GRCGYC | 1 cut(s) | 702 |
| BsaI | GGTCTC | 1 cut(s) | 1089 |
| BsaJI | CCNNGG | 4 cut(s) | 300, 486, 624, 950 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 142, 172 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 845, 876, 1080, 1115 |
| Bse1I | ACTGG | 4 cut(s) | 321, 441, 649, 902 |
| BseBI | CCWGG | 1 cut(s) | 987 |
| BseCI | ATCGAT | 1 cut(s) | 863 |
| BseDI | CCNNGG | 4 cut(s) | 300, 486, 624, 950 |
| BseGI | GGATG | 2 cut(s) | 1188, 1216 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 845, 876, 1080, 1115 |
| BseMII | CTCAG | 3 cut(s) | 182, 1073, 1220 |
| BseNI | ACTGG | 4 cut(s) | 321, 441, 649, 902 |
| BseRI | GAGGAG | 3 cut(s) | 230, 233, 1141 |
| BseSI | GKGCMC | 1 cut(s) | 616 |
| BseX3I | CGGCCG | 2 cut(s) | 258, 297 |
| BseXI | GCAGC | 7 cut(s) | 194, 238, 253, 260, 271, 287, 299 |
| BseYI | CCCAGC | 1 cut(s) | 145 |
| BsgI | GTGCAG | 1 cut(s) | 482 |
| Bsh1236I | CGCG | 2 cut(s) | 296, 952 |
| Bsh1285I | CGRYCG | 2 cut(s) | 261, 300 |
| BshFI | GGCC | 9 cut(s) | 260, 299, 368, 407, 485, 751, 1073, 1108, 1120 |
| BshNI | GGYRCC | 1 cut(s) | 335 |
| BshVI | ATCGAT | 1 cut(s) | 863 |
| BsiEI | CGRYCG | 2 cut(s) | 261, 300 |
| BsiHKAI | GWGCWC | 6 cut(s) | 427, 526, 616, 657, 1058, 1096 |
| BsiHKCI | CYCGRG | 1 cut(s) | 552 |
| BsiSI | CCGG | 2 cut(s) | 856, 877 |
| BslFI | GGGAC | 2 cut(s) | 705, 915 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 845, 876, 1080, 1115 |
| BsmAI | GTCTC | 2 cut(s) | 1089, 1123 |
| BsmFI | GGGAC | 2 cut(s) | 705, 915 |
| BsmI | GAATGC | 2 cut(s) | 923, 1234 |
| BsnI | GGCC | 9 cut(s) | 260, 299, 368, 407, 485, 751, 1073, 1108, 1120 |
| Bso31I | GGTCTC | 1 cut(s) | 1089 |
| BsoBI | CYCGRG | 1 cut(s) | 552 |
| Bsp1286I | GDGCHC | 7 cut(s) | 427, 526, 561, 616, 657, 1058, 1096 |
| Bsp143I | GATC | 2 cut(s) | 194, 864 |
| Bsp19I | CCATGG | 1 cut(s) | 624 |
| BspACI | CCGC | 8 cut(s) | 261, 264, 296, 305, 313, 369, 950, 952 |
| BspANI | GGCC | 9 cut(s) | 260, 299, 368, 407, 485, 751, 1073, 1108, 1120 |
| BspCNI | CTCAG | 3 cut(s) | 183, 1072, 1219 |
| BspDI | ATCGAT | 1 cut(s) | 863 |
| BspFNI | CGCG | 2 cut(s) | 296, 952 |
| BspHI | TCATGA | 1 cut(s) | 1141 |
| BspLI | GGNNCC | 1 cut(s) | 337 |
| BspMAI | CTGCAG | 1 cut(s) | 289 |
| BspMI | ACCTGC | 1 cut(s) | 859 |
| BspPI | GGATC | 1 cut(s) | 859 |
| BspT107I | GGYRCC | 1 cut(s) | 335 |
| BspTNI | GGTCTC | 1 cut(s) | 1089 |
| BsrI | ACTGG | 4 cut(s) | 321, 441, 649, 902 |
| BssECI | CCNNGG | 4 cut(s) | 300, 486, 624, 950 |
| BssMI | GATC | 2 cut(s) | 194, 864 |
| BssNI | GRCGYC | 1 cut(s) | 702 |
| BssT1I | CCWWGG | 1 cut(s) | 624 |
| Bst2UI | CCWGG | 1 cut(s) | 987 |
| Bst4CI | ACNGT | 5 cut(s) | 135, 388, 503, 535, 825 |
| Bst6I | CTCTTC | 1 cut(s) | 349 |
| BstACI | GRCGYC | 1 cut(s) | 702 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 281, 284, 505 |
| BstC8I | GCNNGC | 7 cut(s) | 234, 450, 483, 510, 749, 1054, 1244 |
| BstDEI | CTNAG | 6 cut(s) | 191, 419, 1059, 1098, 1169, 1206 |
| BstDSI | CCRYGG | 4 cut(s) | 300, 486, 624, 950 |
| BstF5I | GGATG | 2 cut(s) | 1188, 1216 |
| BstFNI | CGCG | 2 cut(s) | 296, 952 |
| BstH2I | RGCGCY | 1 cut(s) | 455 |
| BstHHI | GCGC | 1 cut(s) | 454 |
| BstKTI | GATC | 2 cut(s) | 197, 867 |
| BstMAI | GTCTC | 2 cut(s) | 1089, 1123 |
| BstMBI | GATC | 2 cut(s) | 194, 864 |
| BstMCI | CGRYCG | 2 cut(s) | 261, 300 |
| BstNI | CCWGG | 1 cut(s) | 987 |
| BstSCI | CCNGG | 2 cut(s) | 854, 985 |
| BstSFI | CTRYAG | 1 cut(s) | 285 |
| BstSLI | GKGCMC | 1 cut(s) | 616 |
| BstUI | CGCG | 2 cut(s) | 296, 952 |
| BstV1I | GCAGC | 7 cut(s) | 194, 238, 253, 260, 271, 287, 299 |
| BstV2I | GAAGAC | 1 cut(s) | 819 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 730 |
| BstZI | CGGCCG | 2 cut(s) | 258, 297 |
| Bsu15I | ATCGAT | 1 cut(s) | 863 |
| BsuRI | GGCC | 9 cut(s) | 260, 299, 368, 407, 485, 751, 1073, 1108, 1120 |
| BsuTUI | ATCGAT | 1 cut(s) | 863 |
| BtgI | CCRYGG | 4 cut(s) | 300, 486, 624, 950 |
| BtsCI | GGATG | 2 cut(s) | 1188, 1216 |
| BtsIMutI | CAGTG | 3 cut(s) | 642, 802, 821 |
| BveI | ACCTGC | 1 cut(s) | 859 |
| Cac8I | GCNNGC | 7 cut(s) | 234, 450, 483, 510, 749, 1054, 1244 |
| CaiI | CAGNNNCTG | 1 cut(s) | 284 |
| CciI | TCATGA | 1 cut(s) | 1141 |
| CfoI | GCGC | 1 cut(s) | 454 |
| Cfr13I | GGNCC | 5 cut(s) | 366, 406, 848, 1118, 1254 |
| Cfr42I | CCGCGG | 1 cut(s) | 953 |
| ClaI | ATCGAT | 1 cut(s) | 863 |
| CseI | GACGC | 1 cut(s) | 710 |
| Csp6I | GTAC | 1 cut(s) | 61 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 225, 260 |
| CviAII | CATG | 7 cut(s) | 326, 340, 625, 840, 966, 1048, 1142 |
| CviQI | GTAC | 1 cut(s) | 61 |
| DdeI | CTNAG | 6 cut(s) | 191, 419, 1059, 1098, 1169, 1206 |
| DpnI | GATC | 2 cut(s) | 196, 866 |
| DpnII | GATC | 2 cut(s) | 194, 864 |
| EaeI | YGGCCR | 2 cut(s) | 258, 297 |
| EagI | CGGCCG | 2 cut(s) | 258, 297 |
| Eam1104I | CTCTTC | 1 cut(s) | 349 |
| EarI | CTCTTC | 1 cut(s) | 349 |
| EciI | GGCGGA | 1 cut(s) | 302 |
| Ecl136II | GAGCTC | 1 cut(s) | 425 |
| EclXI | CGGCCG | 2 cut(s) | 258, 297 |
| Eco130I | CCWWGG | 1 cut(s) | 624 |
| Eco147I | AGGCCT | 1 cut(s) | 751 |
| Eco24I | GRGCYC | 2 cut(s) | 427, 561 |
| Eco31I | GGTCTC | 1 cut(s) | 1089 |
| Eco47I | GGWCC | 2 cut(s) | 848, 1254 |
| Eco52I | CGGCCG | 2 cut(s) | 258, 297 |
| Eco53kI | GAGCTC | 1 cut(s) | 425 |
| Eco57I | CTGAAG | 1 cut(s) | 198 |
| Eco88I | CYCGRG | 1 cut(s) | 552 |
| EcoICRI | GAGCTC | 1 cut(s) | 425 |
| EcoO109I | RGGNCCY | 2 cut(s) | 848, 1254 |
| EcoRI | GAATTC | 2 cut(s) | 791, 961 |
| EcoRII | CCWGG | 1 cut(s) | 985 |
| EcoT14I | CCWWGG | 1 cut(s) | 624 |
| EcoT38I | GRGCYC | 2 cut(s) | 427, 561 |
| ErhI | CCWWGG | 1 cut(s) | 624 |
| FaeI | CATG | 7 cut(s) | 329, 343, 628, 843, 969, 1051, 1145 |
| FaqI | GGGAC | 2 cut(s) | 705, 915 |
| FatI | CATG | 7 cut(s) | 325, 339, 624, 839, 965, 1047, 1141 |
| FokI | GGATG | 2 cut(s) | 1195, 1223 |
| FriOI | GRGCYC | 2 cut(s) | 427, 561 |
| FspBI | CTAG | 4 cut(s) | 455, 759, 905, 975 |
| GlaI | GCGC | 1 cut(s) | 453 |
| GsaI | CCCAGC | 1 cut(s) | 149 |
| GsuI | CTGGAG | 1 cut(s) | 930 |
| HaeII | RGCGCY | 1 cut(s) | 455 |
| HaeIII | GGCC | 9 cut(s) | 260, 299, 368, 407, 485, 751, 1073, 1108, 1120 |
| HapII | CCGG | 2 cut(s) | 856, 877 |
| HgaI | GACGC | 1 cut(s) | 710 |
| HhaI | GCGC | 1 cut(s) | 454 |
| Hin1I | GRCGYC | 1 cut(s) | 702 |
| Hin1II | CATG | 7 cut(s) | 329, 343, 628, 843, 969, 1051, 1145 |
| Hin6I | GCGC | 1 cut(s) | 452 |
| HinP1I | GCGC | 1 cut(s) | 452 |
| HindIII | AAGCTT | 2 cut(s) | 106, 1244 |
| HinfI | GANTC | 4 cut(s) | 890, 924, 1154, 1263 |
| HpaII | CCGG | 2 cut(s) | 856, 877 |
| HphI | GGTGA | 4 cut(s) | 162, 310, 451, 1189 |
| Hpy166II | GTNNAC | 2 cut(s) | 614, 1199 |
| Hpy188I | TCNGA | 5 cut(s) | 178, 429, 790, 895, 1028 |
| Hpy188III | TCNNGA | 5 cut(s) | 1142, 1158, 1208, 1225, 1260 |
| Hpy8I | GTNNAC | 2 cut(s) | 614, 1199 |
| Hpy99I | CGWCG | 1 cut(s) | 259 |
| HpyAV | CCTTC | 2 cut(s) | 672, 1005 |
| HpyCH4III | ACNGT | 5 cut(s) | 135, 388, 503, 535, 825 |
| HpyCH4V | TGCA | 9 cut(s) | 125, 275, 287, 448, 499, 508, 614, 921, 1186 |
| HpyF3I | CTNAG | 6 cut(s) | 191, 419, 1059, 1098, 1169, 1206 |
| Hsp92I | GRCGYC | 1 cut(s) | 702 |
| Hsp92II | CATG | 7 cut(s) | 329, 343, 628, 843, 969, 1051, 1145 |
| HspAI | GCGC | 1 cut(s) | 452 |
| KspI | CCGCGG | 1 cut(s) | 953 |
| Kzo9I | GATC | 2 cut(s) | 194, 864 |
| LmnI | GCTCC | 4 cut(s) | 220, 667, 1042, 1099 |
| Lsp1109I | GCAGC | 7 cut(s) | 194, 238, 253, 260, 271, 287, 299 |
| LweI | GCATC | 4 cut(s) | 112, 262, 1173, 1201 |
| MaeI | CTAG | 4 cut(s) | 455, 759, 905, 975 |
| MaeIII | GTNAC | 4 cut(s) | 80, 137, 762, 797 |
| MalI | GATC | 2 cut(s) | 196, 866 |
| MboI | GATC | 2 cut(s) | 194, 864 |
| MboII | GAAGA | 3 cut(s) | 131, 366, 819 |
| MfeI | CAATTG | 1 cut(s) | 237 |
| MhlI | GDGCHC | 7 cut(s) | 427, 526, 561, 616, 657, 1058, 1096 |
| MlyI | GAGTC | 1 cut(s) | 1163 |
| MmeI | TCCRAC | 2 cut(s) | 918, 1131 |
| MseI | TTAA | 2 cut(s) | 42, 1218 |
| MspA1I | CMGCKG | 4 cut(s) | 251, 266, 371, 952 |
| MspI | CCGG | 2 cut(s) | 856, 877 |
| MspR9I | CCNGG | 2 cut(s) | 856, 987 |
| MunI | CAATTG | 1 cut(s) | 237 |
| Mva1269I | GAATGC | 2 cut(s) | 923, 1234 |
| MvaI | CCWGG | 1 cut(s) | 987 |
| MvnI | CGCG | 2 cut(s) | 296, 952 |
| NciI | CCSGG | 1 cut(s) | 856 |
| NcoI | CCATGG | 1 cut(s) | 624 |
| NdeII | GATC | 2 cut(s) | 194, 864 |
| NlaIII | CATG | 7 cut(s) | 329, 343, 628, 843, 969, 1051, 1145 |
| NlaIV | GGNNCC | 1 cut(s) | 337 |
| NmuCI | GTSAC | 4 cut(s) | 80, 137, 762, 797 |
| PagI | TCATGA | 1 cut(s) | 1141 |
| PceI | AGGCCT | 1 cut(s) | 751 |
| PctI | GAATGC | 2 cut(s) | 923, 1234 |
| PfeI | GAWTC | 3 cut(s) | 890, 924, 1263 |
| PleI | GAGTC | 1 cut(s) | 1162 |
| PpsI | GAGTC | 1 cut(s) | 1162 |
| PpuMI | RGGWCCY | 2 cut(s) | 848, 1254 |
| PshBI | ATTAAT | 1 cut(s) | 1218 |
| Psp124BI | GAGCTC | 1 cut(s) | 427 |
| Psp5II | RGGWCCY | 2 cut(s) | 848, 1254 |
| Psp6I | CCWGG | 1 cut(s) | 985 |
| PspFI | CCCAGC | 1 cut(s) | 145 |
| PspGI | CCWGG | 1 cut(s) | 985 |
| PspN4I | GGNNCC | 1 cut(s) | 337 |
| PspPI | GGNCC | 5 cut(s) | 366, 406, 848, 1118, 1254 |
| PspPPI | RGGWCCY | 2 cut(s) | 848, 1254 |
| PstI | CTGCAG | 1 cut(s) | 289 |
| PstNI | CAGNNNCTG | 1 cut(s) | 284 |
| PvuII | CAGCTG | 1 cut(s) | 251 |
| RsaI | GTAC | 1 cut(s) | 62 |
| RsaNI | GTAC | 1 cut(s) | 61 |
| SacI | GAGCTC | 1 cut(s) | 427 |
| SacII | CCGCGG | 1 cut(s) | 953 |
| SaqAI | TTAA | 2 cut(s) | 42, 1218 |
| Sau3AI | GATC | 2 cut(s) | 194, 864 |
| Sau96I | GGNCC | 5 cut(s) | 366, 406, 848, 1118, 1254 |
| SchI | GAGTC | 1 cut(s) | 1163 |
| ScrFI | CCNGG | 2 cut(s) | 856, 987 |
| SduI | GDGCHC | 7 cut(s) | 427, 526, 561, 616, 657, 1058, 1096 |
| SfaNI | GCATC | 4 cut(s) | 112, 262, 1173, 1201 |
| SfcI | CTRYAG | 1 cut(s) | 285 |
| Sfr303I | CCGCGG | 1 cut(s) | 953 |
| SgrBI | CCGCGG | 1 cut(s) | 953 |
| SinI | GGWCC | 2 cut(s) | 848, 1254 |
| SseBI | AGGCCT | 1 cut(s) | 751 |
| SsiI | CCGC | 8 cut(s) | 261, 264, 296, 305, 313, 369, 950, 952 |
| SspI | AATATT | 1 cut(s) | 709 |
| SspMI | CTAG | 4 cut(s) | 455, 759, 905, 975 |
| SstI | GAGCTC | 1 cut(s) | 427 |
| StuI | AGGCCT | 1 cut(s) | 751 |
| StyD4I | CCNGG | 2 cut(s) | 854, 985 |
| StyI | CCWWGG | 1 cut(s) | 624 |
| TaaI | ACNGT | 5 cut(s) | 135, 388, 503, 535, 825 |
| TaqI | TCGA | 1 cut(s) | 863 |
| TatI | WGTACW | 1 cut(s) | 60 |
| TauI | GCSGC | 4 cut(s) | 263, 266, 299, 371 |
| TfiI | GAWTC | 3 cut(s) | 890, 924, 1263 |
| Tru1I | TTAA | 2 cut(s) | 42, 1218 |
| Tru9I | TTAA | 2 cut(s) | 42, 1218 |
| TscAI | CASTG | 3 cut(s) | 649, 802, 828 |
| TseFI | GTSAC | 4 cut(s) | 80, 137, 762, 797 |
| TseI | GCWGC | 7 cut(s) | 182, 248, 251, 266, 275, 284, 287 |
| Tsp45I | GTSAC | 4 cut(s) | 80, 137, 762, 797 |
| TspDTI | ATGAA | 6 cut(s) | 222, 729, 930, 954, 1130, 1158 |
| TspGWI | ACGGA | 1 cut(s) | 599 |
| TspRI | CASTG | 3 cut(s) | 649, 802, 828 |
| VneI | GTGCAC | 1 cut(s) | 612 |
| VpaK11BI | GGWCC | 2 cut(s) | 848, 1254 |
| VspI | ATTAAT | 1 cut(s) | 1218 |
| XapI | RAATTY | 4 cut(s) | 70, 791, 880, 961 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 894 |
| XspI | CTAG | 4 cut(s) | 455, 759, 905, 975 |