AT3G19330

UPF0496 protein At3g19330-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004578
Physical Location & Seq
Forward (+)
6699267 .. 6701300
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19330.1

Sequence Viewer

Length: 1149 bp
ATGCGGAACTGTCTTTCCTTCAACCCAGCCTCTCCGGAGGCCTCTCTCGGCGACGACCCTCTTCCCCATCCGTCCTTAGAGAGTGGTGTGGCCTCCACTTCCAGAAACGACGCTTCTATTTCGTCTCCCACGTTTAACCTCAGCCGCGAGTTGGCTCACGCTTTTCAAACCCCTTCATACCACGACGTACGTTCACGGGTTCACGTGGTTGTTGACCTTACACAAATTCATCATCGGCTCATCCAACCAGACATTGAGCTGCTTCTTTCTCAAGTGCTCCAACCAAATAAAGAATGTGTTCAAGAAGCTATTAGACACGTCAAGCAAACTACACTTACTAATCTCGTTTCTACTTACTTCCAACACAGCGAAGACGCTACCCGCCTTTGCTTAAATCTTTACCAAAACGTACACAGTGCTCGCCACCACCTCTACACGCCCCTTTTAGACCTCTTCAACATCTTTCCCGGTGATTCACTCCCCGCCATTGACGAGTCCCTATGTGACCTGGCATTCGACGTTTTTCTTAAGCTCGACACGTTTGAAAACCCTTTCTCATCTCCTGAATCTTACAGCTTTCGAGACACCCAATTATGCTTCTCCCAGCTGAAGCATAATCTGGACAGACGTCTTCGCAAGTCTAGGTCACGGGTCCGCCTCATCCACCATGCCACAGCTGGTTCTTCCTTATGTCTTGTTGCTGCTGTTGTTGCGGTTGCTGCTTCTGCAGTTGTTATTGCCTCTCATGCACTTCCCATCCTTCTTGTTGTTGCAGGTCCCTTGTGCAGTCCTTACCTCCCTCACAGTTTCAAGAGAAAGGAGTTAACTAACATTTGTCAGCTCAATGCTGCTTCCAAGGGTACTTTTGTGCTCAACAAAGATCTTGATACCATTGACCGTCTTGTCTCCCGTTTGCACACTGGAATTGAATACGACAAGTTTTTAATTCGACTTGGATTAGAGAGGGGGAGGGACGTGCATTCAATTCAAGAGATTCTGAAACTGCTTCGCAAGAGCCACCTCCCCCTCACCCATCAACTCAAGGATCTTGAGGATCATATTTGCCTTTGGTTCACTAACGTTAACAAAGCTAGATCGTTGCTCCTAACAGAGATTCATCTTCCTCGACCCAGCCATGTTATTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

382

Amino Acids

43.01

Weight (kDa)

7.73

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 108 - 372 2.5e-11 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 902
AatII GACGTC 1 cut(s) 631
Acc36I ACCTGC 1 cut(s) 764
AccII CGCG 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 6 cut(s) 4, 145, 382, 483, 655, 713
AclI AACGTT 1 cut(s) 1080
AclWI GGATC 2 cut(s) 1053, 1062
AcsI RAATTY 1 cut(s) 225
AcuI CTGAAG 1 cut(s) 629
AcvI CACGTG 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 628
AfaI GTAC 3 cut(s) 189, 411, 862
AfiI CCNNNNNNNGG 1 cut(s) 151
AflII CTTAAG 1 cut(s) 527
AflIII ACRYGT 2 cut(s) 316, 537
AgsI TTSAA 9 cut(s) 22, 167, 302, 457, 545, 811, 929, 984, 989
AjiI CACGTC 2 cut(s) 319, 976
AjnI CCWGG 1 cut(s) 507
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 8 cut(s) 259, 308, 532, 576, 607, 677, 841, 1091
AluI AGCT 8 cut(s) 259, 308, 532, 576, 607, 677, 841, 1091
Alw21I GWGCWC 3 cut(s) 279, 421, 873
Alw26I GTCTC 3 cut(s) 129, 576, 910
AlwI GGATC 2 cut(s) 1053, 1062
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 2 cut(s) 39, 90
ApeKI GCWGC 4 cut(s) 259, 701, 719, 848
ApoI RAATTY 1 cut(s) 225
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 652, 776
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 2 cut(s) 482, 1021
AvaII GGWCC 2 cut(s) 652, 776
BaeI ACNNNNGTAYC 2 cut(s) 852, 885
BbrPI CACGTG 1 cut(s) 205
BbsI GAAGAC 2 cut(s) 378, 623
Bbv12I GWGCWC 3 cut(s) 279, 421, 873
BbvCI CCTCAGC 1 cut(s) 140
BbvI GCAGC 4 cut(s) 246, 688, 706, 835
BccI CCATC 3 cut(s) 75, 764, 1041
BciT130I CCWGG 1 cut(s) 509
BcnI CCSGG 1 cut(s) 468
BcoDI GTCTC 3 cut(s) 129, 576, 910
BfaI CTAG 2 cut(s) 642, 1092
BfmI CTRYAG 2 cut(s) 726, 1145
BfrI CTTAAG 1 cut(s) 527
BfuAI ACCTGC 1 cut(s) 764
BglII AGATCT 1 cut(s) 880
BisI GCNGC 5 cut(s) 145, 260, 702, 720, 849
BlsI GCNGC 5 cut(s) 146, 261, 703, 721, 850
Bme1390I CCNGG 2 cut(s) 468, 509
Bme18I GGWCC 2 cut(s) 652, 776
BmgBI CACGTC 2 cut(s) 319, 976
BmgT120I GGNCC 2 cut(s) 652, 776
BmiI GGNNCC 2 cut(s) 653, 778
BmrFI CCNGG 2 cut(s) 468, 509
BoxI GACNNNNGTC 1 cut(s) 627
BpiI GAAGAC 2 cut(s) 378, 623
Bpu10I CCTNAGC 1 cut(s) 140
BpuEI CTTGAG 3 cut(s) 255, 1025, 1070
BpuMI CCSGG 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 205
BsaHI GRCGYC 1 cut(s) 628
BsaJI CCNNGG 1 cut(s) 855
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 925
BseAI TCCGGA 1 cut(s) 34
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 1 cut(s) 855
BseGI GGATG 4 cut(s) 67, 240, 660, 756
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 925
BseXI GCAGC 4 cut(s) 246, 688, 706, 835
BseYI CCCAGC 3 cut(s) 25, 603, 1130
BsgI GTGCAG 1 cut(s) 805
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 2 cut(s) 41, 92
BsiHKAI GWGCWC 3 cut(s) 279, 421, 873
BsiSI CCGG 2 cut(s) 35, 468
BsiWI CGTACG 1 cut(s) 187
BslFI GGGAC 3 cut(s) 481, 762, 986
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 3 cut(s) 129, 576, 910
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 3 cut(s) 481, 762, 986
BsmI GAATGC 2 cut(s) 512, 979
BsnI GGCC 2 cut(s) 41, 92
Bsp1286I GDGCHC 3 cut(s) 279, 421, 873
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 4 cut(s) 880, 1045, 1054, 1094
BspACI CCGC 6 cut(s) 4, 145, 382, 483, 655, 713
BspANI GGCC 2 cut(s) 41, 92
BspCNI CTCAG 1 cut(s) 153
BspEI TCCGGA 1 cut(s) 34
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 653, 778
BspMAI CTGCAG 1 cut(s) 730
BspMI ACCTGC 1 cut(s) 764
BspPI GGATC 2 cut(s) 1053, 1062
BspTI CTTAAG 1 cut(s) 527
BsrI ACTGG 1 cut(s) 925
BssECI CCNNGG 1 cut(s) 855
BssMI GATC 4 cut(s) 880, 1045, 1054, 1094
BssNI GRCGYC 1 cut(s) 628
BssT1I CCWWGG 1 cut(s) 855
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 4 cut(s) 11, 416, 806, 899
Bst6I CTCTTC 2 cut(s) 66, 458
BstACI GRCGYC 1 cut(s) 628
BstAFI CTTAAG 1 cut(s) 527
BstBAI YACGTR 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 76, 140
BstF5I GGATG 4 cut(s) 67, 240, 660, 756
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 4 cut(s) 883, 1048, 1057, 1097
BstMAI GTCTC 3 cut(s) 129, 576, 910
BstMBI GATC 4 cut(s) 880, 1045, 1054, 1094
BstMWI GCNNNNNNNGC 4 cut(s) 710, 719, 725, 746
BstNI CCWGG 1 cut(s) 509
BstPAI GACNNNNGTC 1 cut(s) 627
BstSCI CCNGG 2 cut(s) 466, 507
BstSFI CTRYAG 2 cut(s) 726, 1145
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 4 cut(s) 246, 688, 706, 835
BstV2I GAAGAC 2 cut(s) 378, 623
BstX2I RGATCY 2 cut(s) 880, 1045
BstYI RGATCY 2 cut(s) 880, 1045
BsuRI GGCC 2 cut(s) 41, 92
BtrI CACGTC 2 cut(s) 319, 976
BtsCI GGATG 4 cut(s) 67, 240, 660, 756
BtsIMutI CAGTG 2 cut(s) 421, 918
BveI ACCTGC 1 cut(s) 764
Cac8I GCNNGC 1 cut(s) 421
Cfr13I GGNCC 2 cut(s) 652, 776
CseI GACGC 2 cut(s) 119, 383
Csp6I GTAC 3 cut(s) 188, 410, 861
CviAII CATG 3 cut(s) 668, 746, 1136
CviQI GTAC 3 cut(s) 188, 410, 861
DdeI CTNAG 2 cut(s) 76, 140
DpnI GATC 4 cut(s) 882, 1047, 1056, 1096
DpnII GATC 4 cut(s) 880, 1045, 1054, 1094
DrdI GACNNNNNNGTC 1 cut(s) 902
DseDI GACNNNNNNGTC 1 cut(s) 902
Eam1104I CTCTTC 2 cut(s) 66, 458
EarI CTCTTC 2 cut(s) 66, 458
EciI GGCGGA 1 cut(s) 644
Eco130I CCWWGG 1 cut(s) 855
Eco147I AGGCCT 1 cut(s) 41
Eco47I GGWCC 2 cut(s) 652, 776
Eco57I CTGAAG 1 cut(s) 629
Eco72I CACGTG 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 776
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 855
ErhI CCWWGG 1 cut(s) 855
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 3 cut(s) 671, 749, 1139
FaiI YATR 9 cut(s) 178, 502, 595, 615, 669, 691, 747, 1059, 1137
FaqI GGGAC 3 cut(s) 481, 762, 986
FatI CATG 3 cut(s) 667, 745, 1135
FauI CCCGC 2 cut(s) 389, 490
Fnu4HI GCNGC 5 cut(s) 145, 260, 702, 720, 849
FokI GGATG 4 cut(s) 54, 227, 647, 743
Fsp4HI GCNGC 5 cut(s) 145, 260, 702, 720, 849
FspBI CTAG 2 cut(s) 642, 1092
GluI GCNGC 5 cut(s) 145, 260, 702, 720, 849
GsaI CCCAGC 3 cut(s) 29, 607, 1134
HaeIII GGCC 2 cut(s) 41, 92
HapII CCGG 2 cut(s) 35, 468
HgaI GACGC 2 cut(s) 119, 383
Hin1I GRCGYC 1 cut(s) 628
Hin1II CATG 3 cut(s) 671, 749, 1139
HincII GTYRAC 3 cut(s) 214, 825, 1084
HindII GTYRAC 3 cut(s) 214, 825, 1084
HinfI GANTC 5 cut(s) 473, 494, 566, 994, 1114
HpaI GTTAAC 2 cut(s) 825, 1084
HpaII CCGG 2 cut(s) 35, 468
HphI GGTGA 2 cut(s) 482, 1021
Hpy166II GTNNAC 7 cut(s) 194, 202, 214, 412, 825, 1074, 1084
Hpy188I TCNGA 1 cut(s) 999
Hpy8I GTNNAC 7 cut(s) 194, 202, 214, 412, 825, 1074, 1084
Hpy99I CGWCG 4 cut(s) 56, 113, 188, 521
HpyAV CCTTC 3 cut(s) 28, 183, 770
HpyCH4III ACNGT 4 cut(s) 11, 416, 806, 899
HpyCH4V TGCA 6 cut(s) 728, 749, 773, 786, 916, 979
HpyF10VI GCNNNNNNNGC 4 cut(s) 710, 719, 725, 746
HpyF3I CTNAG 2 cut(s) 76, 140
Hsp92I GRCGYC 1 cut(s) 628
Hsp92II CATG 3 cut(s) 671, 749, 1139
Kpn2I TCCGGA 1 cut(s) 34
KspAI GTTAAC 2 cut(s) 825, 1084
Kzo9I GATC 4 cut(s) 880, 1045, 1054, 1094
LmnI GCTCC 2 cut(s) 282, 1107
Lsp1109I GCAGC 4 cut(s) 246, 688, 706, 835
MaeI CTAG 2 cut(s) 642, 1092
MaeIII GTNAC 2 cut(s) 503, 645
MalI GATC 4 cut(s) 882, 1047, 1056, 1096
MboI GATC 4 cut(s) 880, 1045, 1054, 1094
MboII GAAGA 6 cut(s) 53, 383, 445, 623, 675, 1112
MflI RGATCY 2 cut(s) 880, 1045
MhlI GDGCHC 3 cut(s) 279, 421, 873
MluCI AATT 5 cut(s) 225, 590, 924, 945, 984
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 3 cut(s) 268, 304, 385
MroI TCCGGA 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 6 cut(s) 135, 392, 528, 824, 944, 1083
MspA1I CMGCKG 2 cut(s) 607, 677
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 2 cut(s) 35, 468
MspR9I CCNGG 2 cut(s) 468, 509
Mva1269I GAATGC 2 cut(s) 512, 979
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 4 cut(s) 710, 719, 725, 746
NciI CCSGG 1 cut(s) 468
NdeII GATC 4 cut(s) 880, 1045, 1054, 1094
NlaIII CATG 3 cut(s) 671, 749, 1139
NlaIV GGNNCC 2 cut(s) 653, 778
NmeAIII GCCGAG 1 cut(s) 27
NmuCI GTSAC 2 cut(s) 503, 645
PceI AGGCCT 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PctI GAATGC 2 cut(s) 512, 979
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 4 cut(s) 473, 566, 994, 1114
Pfl23II CGTACG 1 cut(s) 187
PkrI GCNGC 5 cut(s) 146, 261, 703, 721, 850
PleI GAGTC 1 cut(s) 502
PmaCI CACGTG 1 cut(s) 205
PmlI CACGTG 1 cut(s) 205
PpsI GAGTC 1 cut(s) 502
Ppu21I YACGTR 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 776
PshAI GACNNNNGTC 1 cut(s) 627
Psp1406I AACGTT 1 cut(s) 1080
Psp5II RGGWCCY 1 cut(s) 776
Psp6I CCWGG 1 cut(s) 507
PspCI CACGTG 1 cut(s) 205
PspFI CCCAGC 3 cut(s) 25, 603, 1130
PspGI CCWGG 1 cut(s) 507
PspLI CGTACG 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 653, 778
PspPI GGNCC 2 cut(s) 652, 776
PspPPI RGGWCCY 1 cut(s) 776
PstI CTGCAG 1 cut(s) 730
PsuI RGATCY 2 cut(s) 880, 1045
PvuII CAGCTG 2 cut(s) 607, 677
RsaI GTAC 3 cut(s) 189, 411, 862
RsaNI GTAC 3 cut(s) 188, 410, 861
SaqAI TTAA 6 cut(s) 135, 392, 528, 824, 944, 1083
SatI GCNGC 5 cut(s) 145, 260, 702, 720, 849
Sau3AI GATC 4 cut(s) 880, 1045, 1054, 1094
Sau96I GGNCC 2 cut(s) 652, 776
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 2 cut(s) 468, 509
SduI GDGCHC 3 cut(s) 279, 421, 873
SfcI CTRYAG 2 cut(s) 726, 1145
SinI GGWCC 2 cut(s) 652, 776
SmlI CTYRAG 4 cut(s) 270, 527, 1040, 1049
SmoI CTYRAG 4 cut(s) 270, 527, 1040, 1049
Sse9I AATT 5 cut(s) 225, 590, 924, 945, 984
SseBI AGGCCT 1 cut(s) 41
SsiI CCGC 6 cut(s) 4, 145, 382, 483, 655, 713
SspMI CTAG 2 cut(s) 642, 1092
StuI AGGCCT 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 466, 507
StyI CCWWGG 1 cut(s) 855
TaaI ACNGT 4 cut(s) 11, 416, 806, 899
TaqI TCGA 5 cut(s) 516, 534, 580, 949, 1126
TasI AATT 5 cut(s) 225, 590, 924, 945, 984
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 4 cut(s) 473, 566, 994, 1114
Tru1I TTAA 6 cut(s) 135, 392, 528, 824, 944, 1083
Tru9I TTAA 6 cut(s) 135, 392, 528, 824, 944, 1083
TscAI CASTG 2 cut(s) 421, 925
TseFI GTSAC 2 cut(s) 503, 645
TseI GCWGC 4 cut(s) 259, 701, 719, 848
Tsp45I GTSAC 2 cut(s) 503, 645
TspDTI ATGAA 3 cut(s) 165, 218, 1106
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 2 cut(s) 421, 925
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 652, 776
XapI RAATTY 1 cut(s) 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 2 cut(s) 642, 1092
ZraI GACGTC 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.