Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0004578

Physical Location & Seq

Genomic Coordinates Forward (+)

140259 .. 142951

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00150.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCAGCGTCTCTTGCAGCAATACTAGGAGGTGCTGCAGGAGCCGTGACTTTTGTGGGGATAAGCATCATACTCGTATGGTTCTGTATATCTCGCAATAGGAGTGTTTCAAGAACTTCTGAAACAGGTTCTTCTGATCCTTCTATTCAAGTGGGAAGACATGGAGGGGTTGAGTTGTCAATGCGAGAAACAAGGCGTTTTCATATGGAAGAACTGTCTCTGGCCACAAAACATTTCAGCGATAAAAATTTGATTGGGCAAGGAAATTTTGGGGAGGTGTATATGGGATTTCTCCAGGATGGAATGCTTGTAGCCATCAAAAAGCGACCTGGAACAGCTAGTCAGGAATTTATCAACGAGGTACACTATCTCTCAGCTATTCAGCATCGGAATATTGTTACTCTCTTGGGTTACTGCCAAGAAAATAATCTACAGTTTCTTGTGTACGAGTACATTCATAGTGGAAGTGTTTCCAGTCACTTGTTCGGCACGGGCCAGCATTCACGTGAAAAGCTAGAATTCAAGAACCGCCTATCAATAGCTCAAGGGGCCGCTAAAGGTTTGGCTCATCTTCACTCTTTGAGTCCCCGTGTGGTGCACAAGGATTTTAAAACAGCCAATGTTCTTGTAGATGAAAACTTCATAGCTAAGGTTGCAGATGCGGGAATTCGCAATTTCCTGGGAAGAGTTGATATTGCAGGCTCGTCTTCTCAAGTGACTGCTGATGAGATGTTCCTTGCTCCAGAGGTCAGAGAATTCAGACGATTTTCAGAAAAAAGTGACGTATATAGTTTTGGTGTATTCCTCCTGGAGTTAGTGAGTGGGCGAGAAGCAAGAGATTTTGCATCTTCTGACTCAAACCAGAACATGGTTGAATGGGTGCAAAATATTCAAGAGGGCAGCAATGTATCGTGCATCATCGATGGGAGGTTGGGGAATAGCTTCACAGGTGAAGCTATGGAAGGGTTGATACAGTTGATCATGCGATGTGTGGAGGCTTCGAGTGAGAGGCGACCAAGCATGAGCAATGTGGTAACGGAGCTGGACCGGATAGTTGAGAAAGAGATGAGCTTGACGACAATAATGGGAGAAGGAACTTCTACAGTGATCCCAGGAAGTCAGCTATTTAAAGCAACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

381

Amino Acids

41.79

Weight (kDa)

6.28

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19250 AT3G19330 AT3G19330 AT3G19330 AT3G19330
fragaria_vesca	FvH4_6g54380 FvH4_6g54381
malus_domestica	MD09G1001900.v1.1 MD09G1002000.v1.1 MD17G1006100.v1.1 MD17G1006200.v1.1
prunus_persica	Prupe.3G314200_v2.0.a1 Prupe.3G314300_v2.0.a1
pyrus_communis	pycom111g00150 pycom17g00160
rosa_chinensis	RchiOBHm_Chr2g0176601 RchiOBHm_Chr2g0176611
rosa_laevigata	RLG00000022428
rosa_multiflora	Rmu_co8463679.1_g000001 Rmu_sc0001417.1_g000013 Rmu_sc0039568.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076270
rosa_rugosa	Rorug02G0596300
rosa_samantha	Rh2AG674400 Rh2BG685500 Rh2CG648700 Rh2CG648800 Rh2DG699600 Rh2DG699700
rosa_wichuraiana	Rw2G055320 Rw2G055330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	868
AciI	CCGC	3 cut(s)	529, 552, 662
AclWI	GGATC	2 cut(s)	131, 1102
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	6 cut(s)	247, 265, 347, 518, 666, 755
AcvI	CACGTG	1 cut(s)	506
AfaI	GTAC	3 cut(s)	363, 446, 452
AfiI	CCNNNNNNNGG	1 cut(s)	868
AgsI	TTSAA	5 cut(s)	111, 149, 523, 875, 893
AjnI	CCWGG	5 cut(s)	294, 328, 678, 807, 1111
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	2 cut(s)	15, 222
Alw44I	GTGCAC	1 cut(s)	596
AlwI	GGATC	2 cut(s)	131, 1102
AoxI	GGCC	3 cut(s)	222, 493, 549
ApaLI	GTGCAC	1 cut(s)	596
ApeKI	GCWGC	3 cut(s)	17, 35, 900
ApoI	RAATTY	6 cut(s)	247, 265, 347, 518, 666, 755
Asp700I	GAANNNNTTC	2 cut(s)	469, 941
AspS9I	GGNCC	3 cut(s)	493, 549, 1045
AsuHPI	GGTGA	1 cut(s)	962
AvaII	GGWCC	1 cut(s)	1045
BaeGI	GKGCMC	1 cut(s)	600
BalI	TGGCCA	1 cut(s)	224
BarI	GAAGNNNNNNTAC	2 cut(s)	954, 986
BbrPI	CACGTG	1 cut(s)	506
BbsI	GAAGAC	2 cut(s)	163, 699
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	3 cut(s)	22, 29, 912
BccI	CCATC	3 cut(s)	293, 323, 917
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	5 cut(s)	296, 330, 680, 809, 1113
BclI	TGATCA	1 cut(s)	978
BcoDI	GTCTC	2 cut(s)	15, 222
BfaI	CTAG	3 cut(s)	26, 339, 515
BfmI	CTRYAG	3 cut(s)	36, 431, 1101
BisI	GCNGC	4 cut(s)	18, 36, 552, 901
BlsI	GCNGC	4 cut(s)	19, 37, 553, 902
Bme1390I	CCNGG	5 cut(s)	296, 330, 680, 809, 1113
Bme18I	GGWCC	1 cut(s)	1045
BmgT120I	GGNCC	3 cut(s)	493, 549, 1045
BmiI	GGNNCC	2 cut(s)	43, 550
BmrFI	CCNGG	5 cut(s)	296, 330, 680, 809, 1113
BmsI	GCATC	5 cut(s)	75, 394, 649, 854, 924
BpiI	GAAGAC	2 cut(s)	163, 699
BpmI	CTGGAG	3 cut(s)	278, 726, 830
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	2 cut(s)	528, 696
Bsa29I	ATCGAT	1 cut(s)	921
BsaAI	YACGTR	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	679, 1111
BsaWI	WCCGGW	1 cut(s)	1047
Bsc4I	CCNNNNNNNGG	1 cut(s)	868
Bse1I	ACTGG	1 cut(s)	474
Bse3DI	GCAATG	2 cut(s)	910, 1033
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	5 cut(s)	296, 330, 680, 809, 1113
BseCI	ATCGAT	1 cut(s)	921
BseDI	CCNNGG	2 cut(s)	679, 1111
BseGI	GGATG	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	868
BseMI	GCAATG	2 cut(s)	910, 1033
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	474
BseSI	GKGCMC	1 cut(s)	600
BseXI	GCAGC	3 cut(s)	22, 29, 912
BshFI	GGCC	3 cut(s)	224, 495, 551
BshVI	ATCGAT	1 cut(s)	921
BsiHKAI	GWGCWC	1 cut(s)	600
BsiSI	CCGG	1 cut(s)	1048
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	1 cut(s)	868
BsmAI	GTCTC	2 cut(s)	15, 222
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	570
BsmI	GAATGC	2 cut(s)	309, 499
BsnI	GGCC	3 cut(s)	224, 495, 551
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	3 cut(s)	136, 978, 1107
BspACI	CCGC	3 cut(s)	529, 552, 662
BspANI	GGCC	3 cut(s)	224, 495, 551
BspCNI	CTCAG	1 cut(s)	386
BspDI	ATCGAT	1 cut(s)	921
BspLI	GGNNCC	2 cut(s)	43, 550
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	2 cut(s)	131, 1102
BsrDI	GCAATG	2 cut(s)	910, 1033
BsrI	ACTGG	1 cut(s)	474
BssECI	CCNNGG	2 cut(s)	679, 1111
BssMI	GATC	3 cut(s)	136, 978, 1107
Bst2UI	CCWGG	5 cut(s)	296, 330, 680, 809, 1113
Bst4CI	ACNGT	4 cut(s)	216, 435, 975, 1105
Bst6I	CTCTTC	1 cut(s)	679
BstBAI	YACGTR	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	497, 700
BstDEI	CTNAG	2 cut(s)	373, 648
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	3 cut(s)	139, 981, 1110
BstMAI	GTCTC	2 cut(s)	15, 222
BstMBI	GATC	3 cut(s)	136, 978, 1107
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 41, 548, 653
BstNI	CCWGG	5 cut(s)	296, 330, 680, 809, 1113
BstSCI	CCNGG	5 cut(s)	294, 328, 678, 807, 1111
BstSFI	CTRYAG	3 cut(s)	36, 431, 1101
BstSLI	GKGCMC	1 cut(s)	600
BstV1I	GCAGC	3 cut(s)	22, 29, 912
BstV2I	GAAGAC	2 cut(s)	163, 699
Bsu15I	ATCGAT	1 cut(s)	921
BsuRI	GGCC	3 cut(s)	224, 495, 551
BsuTUI	ATCGAT	1 cut(s)	921
BtgZI	GCGATG	1 cut(s)	1000
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	1110
Cac8I	GCNNGC	2 cut(s)	497, 700
Cfr13I	GGNCC	3 cut(s)	493, 549, 1045
ClaI	ATCGAT	1 cut(s)	921
Csp6I	GTAC	3 cut(s)	362, 445, 451
CviAII	CATG	4 cut(s)	161, 868, 982, 1021
CviQI	GTAC	3 cut(s)	362, 445, 451
DdeI	CTNAG	2 cut(s)	373, 648
DpnI	GATC	3 cut(s)	138, 980, 1109
DpnII	GATC	3 cut(s)	136, 978, 1107
DraI	TTTAAA	2 cut(s)	610, 1129
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	1045
Eco72I	CACGTG	1 cut(s)	506
EcoRI	GAATTC	3 cut(s)	518, 666, 755
EcoRII	CCWGG	5 cut(s)	294, 328, 678, 807, 1111
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	4 cut(s)	164, 871, 985, 1024
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	4 cut(s)	160, 867, 981, 1020
FauI	CCCGC	1 cut(s)	655
FauNDI	CATATG	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	978
Fnu4HI	GCNGC	4 cut(s)	18, 36, 552, 901
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	4 cut(s)	18, 36, 552, 901
FspBI	CTAG	3 cut(s)	26, 339, 515
GluI	GCNGC	4 cut(s)	18, 36, 552, 901
GsuI	CTGGAG	3 cut(s)	278, 726, 830
HaeIII	GGCC	3 cut(s)	224, 495, 551
HapII	CCGG	1 cut(s)	1048
Hin1II	CATG	4 cut(s)	164, 871, 985, 1024
HinfI	GANTC	2 cut(s)	583, 854
HpaII	CCGG	1 cut(s)	1048
HphI	GGTGA	1 cut(s)	962
Hpy166II	GTNNAC	3 cut(s)	364, 445, 598
Hpy188I	TCNGA	7 cut(s)	121, 136, 390, 752, 761, 772, 853
Hpy188III	TCNNGA	5 cut(s)	111, 344, 523, 743, 893
Hpy8I	GTNNAC	3 cut(s)	364, 445, 598
HpyAV	CCTTC	3 cut(s)	150, 956, 1085
HpyCH4III	ACNGT	4 cut(s)	216, 435, 975, 1105
HpyCH4IV	ACGT	2 cut(s)	505, 783
HpyCH4V	TGCA	8 cut(s)	17, 38, 598, 656, 698, 845, 883, 915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 41, 548, 653
HpyF3I	CTNAG	2 cut(s)	373, 648
HpySE526I	ACGT	2 cut(s)	505, 783
Hsp92II	CATG	4 cut(s)	164, 871, 985, 1024
Ksp22I	TGATCA	1 cut(s)	978
Kzo9I	GATC	3 cut(s)	136, 978, 1107
LmnI	GCTCC	3 cut(s)	41, 745, 1039
Lsp1109I	GCAGC	3 cut(s)	22, 29, 912
LweI	GCATC	5 cut(s)	75, 394, 649, 854, 924
MaeI	CTAG	3 cut(s)	26, 339, 515
MaeII	ACGT	2 cut(s)	505, 783
MaeIII	GTNAC	7 cut(s)	46, 397, 410, 476, 715, 779, 1033
MalI	GATC	3 cut(s)	138, 980, 1109
MboI	GATC	3 cut(s)	136, 978, 1107
MboII	GAAGA	7 cut(s)	123, 168, 221, 563, 696, 699, 840
MhlI	GDGCHC	1 cut(s)	600
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	7 cut(s)	247, 265, 347, 518, 666, 673, 755
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	2 cut(s)	592, 848
Mox20I	TGGCCA	1 cut(s)	224
MroXI	GAANNNNTTC	2 cut(s)	469, 941
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	2 cut(s)	609, 1128
MslI	CAYNNNNRTG	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	224
MspI	CCGG	1 cut(s)	1048
MspR9I	CCNGG	5 cut(s)	296, 330, 680, 809, 1113
Mva1269I	GAATGC	2 cut(s)	309, 499
MvaI	CCWGG	5 cut(s)	296, 330, 680, 809, 1113
MwoI	GCNNNNNNNGC	4 cut(s)	14, 41, 548, 653
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	3 cut(s)	136, 978, 1107
NlaIII	CATG	4 cut(s)	164, 871, 985, 1024
NlaIV	GGNNCC	2 cut(s)	43, 550
NmuCI	GTSAC	4 cut(s)	46, 476, 715, 779
PctI	GAATGC	2 cut(s)	309, 499
PdmI	GAANNNNTTC	2 cut(s)	469, 941
PflMI	CCANNNNNTGG	1 cut(s)	868
PfoI	TCCNGGA	2 cut(s)	294, 807
PkrI	GCNGC	4 cut(s)	19, 37, 553, 902
PleI	GAGTC	2 cut(s)	591, 848
PmaCI	CACGTG	1 cut(s)	506
PmlI	CACGTG	1 cut(s)	506
PpsI	GAGTC	2 cut(s)	591, 848
Ppu21I	YACGTR	1 cut(s)	506
Psp6I	CCWGG	5 cut(s)	294, 328, 678, 807, 1111
PspCI	CACGTG	1 cut(s)	506
PspGI	CCWGG	5 cut(s)	294, 328, 678, 807, 1111
PspN4I	GGNNCC	2 cut(s)	43, 550
PspPI	GGNCC	3 cut(s)	493, 549, 1045
PstI	CTGCAG	1 cut(s)	40
RsaI	GTAC	3 cut(s)	363, 446, 452
RsaNI	GTAC	3 cut(s)	362, 445, 451
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	609, 1128
SatI	GCNGC	4 cut(s)	18, 36, 552, 901
Sau3AI	GATC	3 cut(s)	136, 978, 1107
Sau96I	GGNCC	3 cut(s)	493, 549, 1045
SchI	GAGTC	2 cut(s)	592, 848
ScrFI	CCNGG	5 cut(s)	296, 330, 680, 809, 1113
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	5 cut(s)	75, 394, 649, 854, 924
SfcI	CTRYAG	3 cut(s)	36, 431, 1101
SinI	GGWCC	1 cut(s)	1045
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	2 cut(s)	543, 711
SmoI	CTYRAG	2 cut(s)	543, 711
Sse9I	AATT	7 cut(s)	247, 265, 347, 518, 666, 673, 755
SsiI	CCGC	3 cut(s)	529, 552, 662
SspI	AATATT	2 cut(s)	394, 889
SspMI	CTAG	3 cut(s)	26, 339, 515
StyD4I	CCNGG	5 cut(s)	294, 328, 678, 807, 1111
TaaI	ACNGT	4 cut(s)	216, 435, 975, 1105
TaiI	ACGT	2 cut(s)	508, 786
TaqI	TCGA	2 cut(s)	921, 1001
TasI	AATT	7 cut(s)	247, 265, 347, 518, 666, 673, 755
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	554
Tru1I	TTAA	2 cut(s)	609, 1128
Tru9I	TTAA	2 cut(s)	609, 1128
TscAI	CASTG	1 cut(s)	1110
TseFI	GTSAC	4 cut(s)	46, 476, 715, 779
TseI	GCWGC	3 cut(s)	17, 35, 900
Tsp45I	GTSAC	4 cut(s)	46, 476, 715, 779
TspDTI	ATGAA	4 cut(s)	191, 446, 631, 648
TspGWI	ACGGA	1 cut(s)	1052
TspRI	CASTG	1 cut(s)	1110
Van91I	CCANNNNNTGG	1 cut(s)	868
VneI	GTGCAC	1 cut(s)	596
VpaK11BI	GGWCC	1 cut(s)	1045
XapI	RAATTY	6 cut(s)	247, 265, 347, 518, 666, 755
XmnI	GAANNNNTTC	2 cut(s)	469, 941
XspI	CTAG	3 cut(s)	26, 339, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.