Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001417.1

Orthogroup ID

OG0004578

Physical Location & Seq

Genomic Coordinates Reverse (-)

48247 .. 51844

Gene Structure 3598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001417.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

atgtcagcgtctcttgcagcaatacttggaggtgctgcaggagccgtggcattggtggggataattatcatacttatcgggttctgtcttcgcaataggagtgtttcgagaacttctgagacaggttcttctgatccatctgttcaagtgggaagacatggtggagttgagttgtcaatacgagaaacaaggcgttttcagatggaagaattgtctctggccacaaaaaattttagtgatacaaatttgattggggtaggaaaatttggggaggtgtatatgggttttcttcatgacgggatgcttgtagccatcaaaaagcgatctggattacctagtcaggagtttattaatgaggtaaactatctctcagctattcagcatcggaatattgttactctgttgggctactgccaggaaaataatctgcagtttcttgtgtatgagtatattcatagtggaagtgtttcgagtcacttatatggcactggtcagcatgttcgtgaaaagctagaattcaagaatcgactatcaatagctctaggggcagctaaaggcttggcttaccttcactctttgagtcctcgtctggtgcataaggactttaaaacagccaatgttcttgtagatgaaaatttcattgccaaggttgcagatgcaggaattcgtaatttcttgggaaaagatatggcaggcccatcttctcaagtgattactgatgagatattcctttctccagaggtaagagaatttagacgattttctgaaaaaagtgatgtatatagctttggcgtcttccttatggagttgttaagcggcagagaagcagcaaaattgacatcttctgactcgaatcagaacatttttgaatgggtgcaaaatatccaagatgacggcaatatttccagcatcatcgatgagagattggggaatagcttcacagctgaagctatggaaaagttgatgcagttgataataagatgtgtagaagcttcgagtgaaaggcgaccagcgatgagctatgtgagccgttattatgagctagcgagtcttgcattaattttcagctgctgcaaatccatgtctccatctcatcctctcccaccttcccaatcgcaaggaacatcaacgtccgagggcagccctgctaggtcacccttgtcccacgagtacagcctcgccgtcgaaagcacttcctacaatgagatttggtctaaggttcacgtcaatcaacaacatgaggatggggatgaggaagaccaactggtattggagcgagtgcttcagcccaaccgacagtgcgtggagacaacttcaagtggaagaaatgaaattcccaagggaaataactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

450

Amino Acids

49.69

Weight (kDa)

5.8

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19250 AT3G19330 AT3G19330 AT3G19330 AT3G19330
fragaria_vesca	FvH4_6g54380 FvH4_6g54381
malus_domestica	MD09G1001900.v1.1 MD09G1002000.v1.1 MD17G1006100.v1.1 MD17G1006200.v1.1
prunus_persica	Prupe.3G314200_v2.0.a1 Prupe.3G314300_v2.0.a1
pyrus_communis	pycom111g00150 pycom17g00160
rosa_chinensis	RchiOBHm_Chr2g0176601 RchiOBHm_Chr2g0176611
rosa_laevigata	RLG00000022428
rosa_multiflora	Rmu_co8463679.1_g000001 Rmu_sc0001417.1_g000013 Rmu_sc0039568.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076270
rosa_rugosa	Rorug02G0596300
rosa_samantha	Rh2AG674400 Rh2BG685500 Rh2CG648700 Rh2CG648800 Rh2DG699600 Rh2DG699700
rosa_wichuraiana	Rw2G055320 Rw2G055330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	816
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	8 cut(s)	229, 244, 263, 515, 634, 663, 749, 1332
AcuI	CTGAAG	2 cut(s)	966, 1268
AcyI	GRCGYC	1 cut(s)	792
AfaI	GTAC	1 cut(s)	1172
AgsI	TTSAA	4 cut(s)	146, 520, 869, 1317
AjiI	CACGTC	1 cut(s)	1225
AjnI	CCWGG	1 cut(s)	414
Alw26I	GTCTC	5 cut(s)	15, 113, 219, 1089, 1301
AlwI	GGATC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	1071
AoxI	GGCC	2 cut(s)	219, 694
ApeKI	GCWGC	7 cut(s)	17, 35, 548, 827, 1068, 1071, 1140
ApoI	RAATTY	8 cut(s)	229, 244, 263, 515, 634, 663, 749, 1332
AseI	ATTAAT	2 cut(s)	351, 1058
Asp700I	GAANNNNTTC	2 cut(s)	466, 935
AspS9I	GGNCC	1 cut(s)	695
AsuHPI	GGTGA	1 cut(s)	1146
AsuNHI	GCTAGC	1 cut(s)	1042
BalI	TGGCCA	1 cut(s)	221
BauI	CACGAG	1 cut(s)	1166
BbsI	GAAGAC	4 cut(s)	80, 160, 787, 1263
BbvI	GCAGC	7 cut(s)	22, 29, 560, 839, 1055, 1058, 1152
BccI	CCATC	6 cut(s)	145, 196, 320, 706, 1096, 1238
BceAI	ACGGC	4 cut(s)	29, 910, 1014, 1166
BciT130I	CCWGG	1 cut(s)	416
BcoDI	GTCTC	5 cut(s)	15, 113, 219, 1089, 1301
BfaI	CTAG	5 cut(s)	336, 512, 542, 1043, 1149
BfmI	CTRYAG	2 cut(s)	36, 428
BisI	GCNGC	8 cut(s)	18, 36, 549, 817, 828, 1069, 1072, 1141
BlsI	GCNGC	8 cut(s)	19, 37, 550, 818, 829, 1070, 1073, 1142
Bme1390I	CCNGG	1 cut(s)	416
BmgBI	CACGTC	1 cut(s)	1225
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	5 cut(s)	291, 391, 646, 918, 954
BmtI	GCTAGC	1 cut(s)	1046
BpiI	GAAGAC	4 cut(s)	80, 160, 787, 1263
BpmI	CTGGAG	1 cut(s)	720
BpuEI	CTTGAG	1 cut(s)	690
Bsa29I	ATCGAT	1 cut(s)	915
BsaBI	GATNNNNATC	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	792
BsaJI	CCNNGG	4 cut(s)	45, 645, 1134, 1338
Bse1I	ACTGG	2 cut(s)	493, 1269
Bse3DI	GCAATG	1 cut(s)	639
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	416
BseCI	ATCGAT	1 cut(s)	915
BseDI	CCNNGG	4 cut(s)	45, 645, 1134, 1338
BseGI	GGATG	4 cut(s)	306, 1093, 1249, 1255
BseJI	GATNNNNATC	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	108, 384
BseNI	ACTGG	2 cut(s)	493, 1269
BseXI	GCAGC	7 cut(s)	22, 29, 560, 839, 1055, 1058, 1152
BshFI	GGCC	2 cut(s)	221, 696
BshVI	ATCGAT	1 cut(s)	915
BslFI	GGGAC	1 cut(s)	1147
BsmAI	GTCTC	5 cut(s)	15, 113, 219, 1089, 1301
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	1147
BsnI	GGCC	2 cut(s)	221, 696
Bsp143I	GATC	2 cut(s)	133, 323
BspACI	CCGC	1 cut(s)	816
BspANI	GGCC	2 cut(s)	221, 696
BspCNI	CTCAG	2 cut(s)	109, 383
BspDI	ATCGAT	1 cut(s)	915
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	2 cut(s)	40, 432
BspOI	GCTAGC	1 cut(s)	1046
BspPI	GGATC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	493, 1269
BssECI	CCNNGG	4 cut(s)	45, 645, 1134, 1338
BssMI	GATC	2 cut(s)	133, 323
BssNI	GRCGYC	1 cut(s)	792
BssSI	CACGAG	1 cut(s)	1166
BssT1I	CCWWGG	2 cut(s)	645, 1338
Bst2BI	CACGAG	1 cut(s)	1166
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	1299
BstACI	GRCGYC	1 cut(s)	792
BstC8I	GCNNGC	2 cut(s)	694, 1044
BstDEI	CTNAG	3 cut(s)	117, 370, 1215
BstDSI	CCRYGG	1 cut(s)	45
BstEII	GGTNACC	1 cut(s)	1152
BstF5I	GGATG	4 cut(s)	306, 1093, 1249, 1255
BstKTI	GATC	2 cut(s)	136, 326
BstMAI	GTCTC	5 cut(s)	15, 113, 219, 1089, 1301
BstMBI	GATC	2 cut(s)	133, 323
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 41, 545, 650, 1026, 1052
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	500
BstPI	GGTNACC	1 cut(s)	1152
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	2 cut(s)	36, 428
BstV1I	GCAGC	7 cut(s)	22, 29, 560, 839, 1055, 1058, 1152
BstV2I	GAAGAC	4 cut(s)	80, 160, 787, 1263
Bsu15I	ATCGAT	1 cut(s)	915
BsuRI	GGCC	2 cut(s)	221, 696
BsuTUI	ATCGAT	1 cut(s)	915
BtgI	CCRYGG	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	1028
BtrI	CACGTC	1 cut(s)	1225
BtsCI	GGATG	4 cut(s)	306, 1093, 1249, 1255
BtsIMutI	CAGTG	2 cut(s)	486, 1304
Cac8I	GCNNGC	2 cut(s)	694, 1044
CaiI	CAGNNNCTG	1 cut(s)	1071
CciI	TCATGA	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	695
ClaI	ATCGAT	1 cut(s)	915
CseI	GACGC	1 cut(s)	781
Csp6I	GTAC	1 cut(s)	1171
CviAII	CATG	5 cut(s)	158, 293, 497, 1081, 1238
CviQI	GTAC	1 cut(s)	1171
DdeI	CTNAG	3 cut(s)	117, 370, 1215
DpnI	GATC	2 cut(s)	135, 325
DpnII	GATC	2 cut(s)	133, 323
DraI	TTTAAA	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	645, 1338
Eco57I	CTGAAG	2 cut(s)	966, 1268
Eco91I	GGTNACC	1 cut(s)	1152
EcoO65I	GGTNACC	1 cut(s)	1152
EcoRI	GAATTC	2 cut(s)	515, 663
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	645, 1338
ErhI	CCWWGG	2 cut(s)	645, 1338
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	5 cut(s)	161, 296, 500, 1084, 1241
FaqI	GGGAC	1 cut(s)	1147
FatI	CATG	5 cut(s)	157, 292, 496, 1080, 1237
Fnu4HI	GCNGC	8 cut(s)	18, 36, 549, 817, 828, 1069, 1072, 1141
FokI	GGATG	4 cut(s)	313, 1080, 1256, 1262
Fsp4HI	GCNGC	8 cut(s)	18, 36, 549, 817, 828, 1069, 1072, 1141
FspBI	CTAG	5 cut(s)	336, 512, 542, 1043, 1149
GluI	GCNGC	8 cut(s)	18, 36, 549, 817, 828, 1069, 1072, 1141
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	2 cut(s)	221, 696
HgaI	GACGC	1 cut(s)	781
Hin1I	GRCGYC	1 cut(s)	792
Hin1II	CATG	5 cut(s)	161, 296, 500, 1084, 1241
HindIII	AAGCTT	1 cut(s)	990
HinfI	GANTC	6 cut(s)	472, 523, 580, 848, 853, 1048
HphI	GGTGA	1 cut(s)	1146
Hpy166II	GTNNAC	2 cut(s)	361, 1222
Hpy188I	TCNGA	8 cut(s)	118, 133, 201, 387, 766, 847, 858, 1135
Hpy188III	TCNNGA	7 cut(s)	108, 293, 327, 341, 503, 520, 737
Hpy8I	GTNNAC	2 cut(s)	361, 1222
Hpy99I	CGWCG	1 cut(s)	1187
HpyAV	CCTTC	2 cut(s)	578, 1116
HpyCH4III	ACNGT	1 cut(s)	1299
HpyCH4IV	ACGT	2 cut(s)	1130, 1224
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 41, 545, 650, 1026, 1052
HpyF3I	CTNAG	3 cut(s)	117, 370, 1215
HpySE526I	ACGT	2 cut(s)	1130, 1224
Hsp92I	GRCGYC	1 cut(s)	792
Hsp92II	CATG	5 cut(s)	161, 296, 500, 1084, 1241
Kzo9I	GATC	2 cut(s)	133, 323
LmnI	GCTCC	2 cut(s)	41, 1273
Lsp1109I	GCAGC	7 cut(s)	22, 29, 560, 839, 1055, 1058, 1152
LweI	GCATC	5 cut(s)	291, 391, 646, 918, 954
MaeI	CTAG	5 cut(s)	336, 512, 542, 1043, 1149
MaeII	ACGT	2 cut(s)	1130, 1224
MaeIII	GTNAC	3 cut(s)	394, 473, 1152
MalI	GATC	2 cut(s)	135, 325
MboI	GATC	2 cut(s)	133, 323
MlsI	TGGCCA	1 cut(s)	221
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	4 cut(s)	481, 589, 842, 1057
Mox20I	TGGCCA	1 cut(s)	221
MroXI	GAANNNNTTC	2 cut(s)	466, 935
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	4 cut(s)	351, 606, 812, 1058
MslI	CAYNNNNRTG	3 cut(s)	480, 501, 1242
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	2 cut(s)	944, 1068
MspR9I	CCNGG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	6 cut(s)	14, 41, 545, 650, 1026, 1052
NdeII	GATC	2 cut(s)	133, 323
NheI	GCTAGC	1 cut(s)	1042
NlaIII	CATG	5 cut(s)	161, 296, 500, 1084, 1241
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	2 cut(s)	473, 1152
NspI	RCATGY	1 cut(s)	500
PagI	TCATGA	1 cut(s)	292
PdmI	GAANNNNTTC	2 cut(s)	466, 935
PfeI	GAWTC	2 cut(s)	523, 853
PkrI	GCNGC	8 cut(s)	19, 37, 550, 818, 829, 1070, 1073, 1142
PleI	GAGTC	4 cut(s)	480, 588, 842, 1056
PpsI	GAGTC	4 cut(s)	480, 588, 842, 1056
PshBI	ATTAAT	2 cut(s)	351, 1058
Psp6I	CCWGG	1 cut(s)	414
PspEI	GGTNACC	1 cut(s)	1152
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	695
PstI	CTGCAG	2 cut(s)	40, 432
PstNI	CAGNNNCTG	1 cut(s)	1071
PvuII	CAGCTG	2 cut(s)	944, 1068
RsaI	GTAC	1 cut(s)	1172
RsaNI	GTAC	1 cut(s)	1171
RseI	CAYNNNNRTG	3 cut(s)	480, 501, 1242
SaqAI	TTAA	4 cut(s)	351, 606, 812, 1058
SatI	GCNGC	8 cut(s)	18, 36, 549, 817, 828, 1069, 1072, 1141
Sau3AI	GATC	2 cut(s)	133, 323
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	4 cut(s)	481, 589, 842, 1057
ScrFI	CCNGG	1 cut(s)	416
SfaNI	GCATC	5 cut(s)	291, 391, 646, 918, 954
SfcI	CTRYAG	2 cut(s)	36, 428
SmiMI	CAYNNNNRTG	3 cut(s)	480, 501, 1242
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
SsiI	CCGC	1 cut(s)	816
SspI	AATATT	2 cut(s)	391, 901
SspMI	CTAG	5 cut(s)	336, 512, 542, 1043, 1149
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	645, 1338
TaaI	ACNGT	1 cut(s)	1299
TaiI	ACGT	2 cut(s)	1133, 1227
TaqI	TCGA	7 cut(s)	107, 470, 526, 851, 915, 995, 1185
TatI	WGTACW	1 cut(s)	1170
TauI	GCSGC	1 cut(s)	819
TfiI	GAWTC	2 cut(s)	523, 853
Tru1I	TTAA	4 cut(s)	351, 606, 812, 1058
Tru9I	TTAA	4 cut(s)	351, 606, 812, 1058
TscAI	CASTG	2 cut(s)	493, 1304
TseFI	GTSAC	2 cut(s)	473, 1152
TseI	GCWGC	7 cut(s)	17, 35, 548, 827, 1068, 1071, 1140
Tsp45I	GTSAC	2 cut(s)	473, 1152
TspDTI	ATGAA	5 cut(s)	281, 443, 628, 645, 1344
TspRI	CASTG	2 cut(s)	493, 1304
VspI	ATTAAT	2 cut(s)	351, 1058
XapI	RAATTY	8 cut(s)	229, 244, 263, 515, 634, 663, 749, 1332
XceI	RCATGY	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	466, 935
XspI	CTAG	5 cut(s)	336, 512, 542, 1043, 1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.