Rh2CG648700

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004578
Physical Location & Seq
Reverse (-)
81726121 .. 81727240
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG648700.1

Sequence Viewer

Length: 879 bp
ATGTCTCCATCTCATCCTCTCCCACCTTCCCAATCGCAAGGAACATCAACGTCCGAGGGCAGCCCTGCTAGGTCACCCTTGTCCCACGAGTACAGCCTCGCCGTCGAAAGCACCTCCTACAATGAGATTTGGTCTAAGGTTCACGTCAATCAACAACATGAGGATGGGGATGAGGAAGACCAACTGGTATTGGAGCGAGTGCTTCAGCCCAACCGACAGTGCGTGGAAGAGGCCCTCCGCCGCGCCGATCACGCCTTGGACATCTTCCAACAATTCGACAGCCACGACAACCCCTTCCCCGCCCCCGACTCCCACAACTTCGACGACACGCGCCGCCTCTTCGACGACCTCAAGCAGCAGCTCGATCGCCGCCTCCGCGCCTCCCGCTCCAAAATTCGCCGCATTCGCCGAGCCAATGTTGCGTCCACTATATGCCTCATTGGAACTGCCGTGGGAGTAGTGGCTTCTGCGGCCGCAATCACGGCCCACGCTCTGGCGGCGTTTGTTGTGGCGGGGCCTTTGTGCTGCAGCGGCAGCAGAGCGAACAAGGAGGTTGCGCATATGAAACAAGTGGATGCTGCGGCCAAGGGGACGTGTGTGCTGAACAATGATCTGGCGACCATTGACCGGCTGGCGCGGCGCCTACATACGGCCGTGGAGGGCGACAAGCTTCTGATTAGGCTGGGATTGGAGAGGGGAGCTCAAGACAAGCATCCCATTCAGGAGGTGCTTAAGCAGCTGCGCAAGAGCCACCCCAATTTCGTCCACCTTATCAACGAACTTGATCAACATATATGCCTCTGCTTTAACACCGTTAACAGGGCCAGGTCGCTGCTTCTCCAAGAGATCCACAATCTCCAAACAGAGGCAGCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

292

Amino Acids

32.44

Weight (kDa)

6.73

Isoelectric Point (pI)

60.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 89 - 283 2.8e-08 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 558, 743
AccB1I GGYRCC 1 cut(s) 639
AccB7I CCANNNNNTGG 1 cut(s) 493
AccBSI CCGCTC 1 cut(s) 387
AccII CGCG 4 cut(s) 243, 331, 378, 637
AclWI GGATC 1 cut(s) 841
AcoI YGGCCR 3 cut(s) 471, 582, 651
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 640
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 5 cut(s) 493, 627, 649, 819, 865
AflII CTTAAG 1 cut(s) 731
AflIII ACRYGT 1 cut(s) 593
AjiI CACGTC 2 cut(s) 145, 594
AjnI CCWGG 1 cut(s) 824
AluBI AGCT 5 cut(s) 361, 670, 701, 739, 876
AluI AGCT 5 cut(s) 361, 670, 701, 739, 876
Alw21I GWGCWC 1 cut(s) 703
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 841
AoxI GGCC 7 cut(s) 231, 471, 483, 515, 582, 651, 822
ApoI RAATTY 1 cut(s) 393
AspLEI GCGC 7 cut(s) 245, 333, 380, 559, 637, 642, 744
AspS9I GGNCC 4 cut(s) 232, 484, 515, 822
AsuHPI GGTGA 1 cut(s) 66
BanI GGYRCC 1 cut(s) 639
BanII GRGCYC 1 cut(s) 703
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 703
BccI CCATC 2 cut(s) 16, 158
BceAI ACGGC 5 cut(s) 86, 434, 498, 638, 666
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 1 cut(s) 826
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 526
BfoI RGCGCY 1 cut(s) 643
BfrI CTTAAG 1 cut(s) 731
Bme1390I CCNGG 1 cut(s) 826
BmgBI CACGTC 2 cut(s) 145, 594
BmgT120I GGNCC 4 cut(s) 232, 484, 515, 822
BmiI GGNNCC 2 cut(s) 516, 641
BmrFI CCNGG 1 cut(s) 826
BmsI GCATC 2 cut(s) 565, 721
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 685, 717
BpuEI CTTGAG 2 cut(s) 335, 687
BsaHI GRCGYC 1 cut(s) 640
BsaJI CCNNGG 5 cut(s) 54, 255, 450, 585, 654
Bsc4I CCNNNNNNNGG 5 cut(s) 493, 627, 649, 819, 865
Bse118I RCCGGY 1 cut(s) 627
Bse1I ACTGG 1 cut(s) 189
BseBI CCWGG 1 cut(s) 826
BseDI CCNNGG 5 cut(s) 54, 255, 450, 585, 654
BseGI GGATG 5 cut(s) 13, 169, 175, 580, 712
BseLI CCNNNNNNNGG 5 cut(s) 493, 627, 649, 819, 865
BseNI ACTGG 1 cut(s) 189
BseX3I CGGCCG 2 cut(s) 471, 651
BseYI CCCAGC 1 cut(s) 682
Bsh1236I CGCG 4 cut(s) 243, 331, 378, 637
Bsh1285I CGRYCG 3 cut(s) 367, 474, 654
BshFI GGCC 7 cut(s) 233, 473, 485, 517, 584, 653, 824
BshNI GGYRCC 1 cut(s) 639
BsiEI CGRYCG 3 cut(s) 367, 474, 654
BsiHKAI GWGCWC 1 cut(s) 703
BsiSI CCGG 1 cut(s) 628
BslFI GGGAC 2 cut(s) 67, 604
BslI CCNNNNNNNGG 5 cut(s) 493, 627, 649, 819, 865
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 67, 604
BsmI GAATGC 1 cut(s) 402
BsnI GGCC 7 cut(s) 233, 473, 485, 517, 584, 653, 824
Bsp1286I GDGCHC 1 cut(s) 703
Bsp143I GATC 5 cut(s) 247, 364, 610, 784, 846
BspANI GGCC 7 cut(s) 233, 473, 485, 517, 584, 653, 824
BspFNI CGCG 4 cut(s) 243, 331, 378, 637
BspLI GGNNCC 2 cut(s) 516, 641
BspMAI CTGCAG 1 cut(s) 530
BspPI GGATC 1 cut(s) 841
BspT107I GGYRCC 1 cut(s) 639
BspTI CTTAAG 1 cut(s) 731
BsrBI CCGCTC 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 627
BsrI ACTGG 1 cut(s) 189
BssAI RCCGGY 1 cut(s) 627
BssECI CCNNGG 5 cut(s) 54, 255, 450, 585, 654
BssMI GATC 5 cut(s) 247, 364, 610, 784, 846
BssNI GRCGYC 1 cut(s) 640
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 2 cut(s) 255, 585
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 826
Bst4CI ACNGT 2 cut(s) 219, 814
Bst6I CTCTTC 2 cut(s) 222, 344
BstACI GRCGYC 1 cut(s) 640
BstAFI CTTAAG 1 cut(s) 731
BstC8I GCNNGC 2 cut(s) 633, 874
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 2 cut(s) 450, 654
BstEII GGTNACC 1 cut(s) 72
BstF5I GGATG 5 cut(s) 13, 169, 175, 580, 712
BstFNI CGCG 4 cut(s) 243, 331, 378, 637
BstH2I RGCGCY 1 cut(s) 643
BstHHI GCGC 7 cut(s) 245, 333, 380, 559, 637, 642, 744
BstKTI GATC 5 cut(s) 250, 367, 613, 787, 849
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 5 cut(s) 247, 364, 610, 784, 846
BstMCI CGRYCG 3 cut(s) 367, 474, 654
BstNI CCWGG 1 cut(s) 826
BstPI GGTNACC 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 824
BstSFI CTRYAG 1 cut(s) 526
BstUI CGCG 4 cut(s) 243, 331, 378, 637
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 846
BstYI RGATCY 1 cut(s) 846
BstZI CGGCCG 2 cut(s) 471, 651
BsuRI GGCC 7 cut(s) 233, 473, 485, 517, 584, 653, 824
BtgI CCRYGG 2 cut(s) 450, 654
BtrI CACGTC 2 cut(s) 145, 594
BtsCI GGATG 5 cut(s) 13, 169, 175, 580, 712
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 2 cut(s) 633, 874
CciNI GCGGCCGC 1 cut(s) 471
CfoI GCGC 7 cut(s) 245, 333, 380, 559, 637, 642, 744
Cfr10I RCCGGY 1 cut(s) 627
Cfr13I GGNCC 4 cut(s) 232, 484, 515, 822
CseI GACGC 1 cut(s) 411
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 158
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 135
DinI GGCGCC 1 cut(s) 641
DpnI GATC 5 cut(s) 249, 366, 612, 786, 848
DpnII GATC 5 cut(s) 247, 364, 610, 784, 846
EaeI YGGCCR 3 cut(s) 471, 582, 651
EagI CGGCCG 2 cut(s) 471, 651
Eam1104I CTCTTC 2 cut(s) 222, 344
EarI CTCTTC 2 cut(s) 222, 344
EciI GGCGGA 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 701
EclXI CGGCCG 2 cut(s) 471, 651
Eco130I CCWWGG 2 cut(s) 255, 585
Eco24I GRGCYC 1 cut(s) 703
Eco52I CGGCCG 2 cut(s) 471, 651
Eco53kI GAGCTC 1 cut(s) 701
Eco57I CTGAAG 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 701
EcoO109I RGGNCCY 2 cut(s) 232, 515
EcoO65I GGTNACC 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 824
EcoT14I CCWWGG 2 cut(s) 255, 585
EcoT38I GRGCYC 1 cut(s) 703
EgeI GGCGCC 1 cut(s) 641
EheI GGCGCC 1 cut(s) 641
ErhI CCWWGG 2 cut(s) 255, 585
FaeI CATG 1 cut(s) 161
FaiI YATR 9 cut(s) 159, 431, 433, 561, 563, 648, 792, 794, 796
FaqI GGGAC 2 cut(s) 67, 604
FatI CATG 1 cut(s) 157
FauI CCCGC 3 cut(s) 307, 392, 505
FauNDI CATATG 1 cut(s) 561
FbaI TGATCA 1 cut(s) 784
FokI GGATG 4 cut(s) 176, 182, 587, 699
FriOI GRGCYC 1 cut(s) 703
FspBI CTAG 1 cut(s) 69
FspI TGCGCA 2 cut(s) 558, 743
GlaI GCGC 7 cut(s) 244, 332, 379, 558, 636, 641, 743
GsaI CCCAGC 1 cut(s) 686
HaeII RGCGCY 1 cut(s) 643
HaeIII GGCC 7 cut(s) 233, 473, 485, 517, 584, 653, 824
HapII CCGG 1 cut(s) 628
HgaI GACGC 1 cut(s) 411
HhaI GCGC 7 cut(s) 245, 333, 380, 559, 637, 642, 744
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 7 cut(s) 243, 331, 378, 557, 635, 640, 742
HinP1I GCGC 7 cut(s) 243, 331, 378, 557, 635, 640, 742
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 1 cut(s) 308
HpaI GTTAAC 1 cut(s) 817
HpaII CCGG 1 cut(s) 628
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 4 cut(s) 142, 426, 766, 817
Hpy188I TCNGA 2 cut(s) 55, 675
Hpy188III TCNNGA 2 cut(s) 704, 722
Hpy8I GTNNAC 4 cut(s) 142, 426, 766, 817
Hpy99I CGWCG 3 cut(s) 107, 326, 347
HpyAV CCTTC 2 cut(s) 36, 304
HpyCH4III ACNGT 2 cut(s) 219, 814
HpyCH4IV ACGT 3 cut(s) 50, 144, 593
HpyCH4V TGCA 1 cut(s) 528
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 3 cut(s) 50, 144, 593
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 7 cut(s) 243, 331, 378, 557, 635, 640, 742
KasI GGCGCC 1 cut(s) 639
Ksp22I TGATCA 1 cut(s) 784
KspAI GTTAAC 1 cut(s) 817
Kzo9I GATC 5 cut(s) 247, 364, 610, 784, 846
LmnI GCTCC 3 cut(s) 193, 392, 698
LweI GCATC 2 cut(s) 565, 721
MaeI CTAG 1 cut(s) 69
MaeII ACGT 3 cut(s) 50, 144, 593
MaeIII GTNAC 1 cut(s) 72
MalI GATC 5 cut(s) 249, 366, 612, 786, 848
MbiI CCGCTC 1 cut(s) 387
MboI GATC 5 cut(s) 247, 364, 610, 784, 846
MboII GAAGA 4 cut(s) 188, 239, 256, 331
MflI RGATCY 1 cut(s) 846
MhlI GDGCHC 1 cut(s) 703
MluCI AATT 3 cut(s) 272, 393, 757
Mly113I GGCGCC 1 cut(s) 640
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 292
MseI TTAA 3 cut(s) 732, 807, 816
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 3 cut(s) 531, 739, 876
MspCI CTTAAG 1 cut(s) 731
MspI CCGG 1 cut(s) 628
MspR9I CCNGG 1 cut(s) 826
MteI GCGCNGCGC 1 cut(s) 638
Mva1269I GAATGC 1 cut(s) 402
MvaI CCWGG 1 cut(s) 826
MvnI CGCG 4 cut(s) 243, 331, 378, 637
NarI GGCGCC 1 cut(s) 640
NdeI CATATG 1 cut(s) 561
NdeII GATC 5 cut(s) 247, 364, 610, 784, 846
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 516, 641
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 72
NotI GCGGCCGC 1 cut(s) 471
NsbI TGCGCA 2 cut(s) 558, 743
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 1 cut(s) 402
PflMI CCANNNNNTGG 1 cut(s) 493
Ple19I CGATCG 1 cut(s) 367
PleI GAGTC 1 cut(s) 302
PluTI GGCGCC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 302
Psp124BI GAGCTC 1 cut(s) 703
Psp6I CCWGG 1 cut(s) 824
PspEI GGTNACC 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 682
PspGI CCWGG 1 cut(s) 824
PspN4I GGNNCC 2 cut(s) 516, 641
PspPI GGNCC 4 cut(s) 232, 484, 515, 822
PstI CTGCAG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 846
PvuI CGATCG 1 cut(s) 367
PvuII CAGCTG 2 cut(s) 739, 876
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 162
SacI GAGCTC 1 cut(s) 703
SaqAI TTAA 3 cut(s) 732, 807, 816
Sau3AI GATC 5 cut(s) 247, 364, 610, 784, 846
Sau96I GGNCC 4 cut(s) 232, 484, 515, 822
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 826
SduI GDGCHC 1 cut(s) 703
SfaNI GCATC 2 cut(s) 565, 721
SfcI CTRYAG 1 cut(s) 526
SfoI GGCGCC 1 cut(s) 641
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 3 cut(s) 350, 702, 731
SmoI CTYRAG 3 cut(s) 350, 702, 731
Sse9I AATT 3 cut(s) 272, 393, 757
SspDI GGCGCC 1 cut(s) 639
SspMI CTAG 1 cut(s) 69
SstI GAGCTC 1 cut(s) 703
StyD4I CCNGG 1 cut(s) 824
StyI CCWWGG 2 cut(s) 255, 585
TaaI ACNGT 2 cut(s) 219, 814
TaiI ACGT 3 cut(s) 53, 147, 596
TaqI TCGA 5 cut(s) 105, 276, 321, 342, 363
TasI AATT 3 cut(s) 272, 393, 757
TatI WGTACW 1 cut(s) 90
Tru1I TTAA 3 cut(s) 732, 807, 816
Tru9I TTAA 3 cut(s) 732, 807, 816
TscAI CASTG 1 cut(s) 224
TseFI GTSAC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 578
TspRI CASTG 1 cut(s) 224
Van91I CCANNNNNTGG 1 cut(s) 493
Vha464I CTTAAG 1 cut(s) 731
XapI RAATTY 1 cut(s) 393
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.