Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004578

Physical Location & Seq

Genomic Coordinates Reverse (-)

27162415 .. 27164907

Gene Structure 2493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G314300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCAGCGTCTCTTGCAGCAATATTAGGAGGTGCTGCAGGAGCCGTGACTTTGGTGGGCATAACTATCATACTCATATGGTTCTGTCTATCTCACAATAGGAGTGTATCCAGAACTTCAGAAACAGGTTCTTCTGATCCATCTGTTCAAGTGGGAAGACATGCTGGGGTTGAGTTGTCAATGCGAGAAACAAGGCGTTTTCAGATGGAAGAATTGTCTCTAGCCACAAAAAATTTCAGTGATACAAACTTGATTGGGGAAGGAAAATTTGGGGAGGTATACATGGGTTTTCTTCAAGATGGGATGCTTGTAGCCATCAAAAGGCGACCTGGAACACCTAGTCAGGAATTTATCAATGAGGTACACTATCTCTCAGCTATTCAGCATCGGCATATTGTTACTCTGTTGGGTTACTGCCAGGAAAATAATCTACAGTTTCTTGTGTACGAGTATATTCATAGTGGAAGTGTTTCCAGTCACCTGTATGGCACTGGTCAGCATTCACGTAAAAAGCTAGAATTCAAGAACCGACTATCAATAGCTCTAGGGGCAGCTAAAGGTTTGGCTCATCTTCACTCTTTGAGTCCCCGTCTGGTGCATAAAGATTTCAAAACAGCCAATGTTCTTGTAGATGAAGATCTACTAGCTAAGGTTGCAGATGCAGGAATCCGCAATTTCCTTGGAAGAGTTGATATTGCAGGCCCATCTTCTCAAGTGACTGCTGATGAGATGTTCCTTGCTCCAGAGGTGAGAGAGTTTAGACGATTTTCGGAGAAAAGTGACATATATAGCTTTGGTGTATTCCTTCTGGAGTTAGTAAGTGGGCGAGAAGCAGGAGAATTGGCATCTTCCGACTCAAACCAGAACCTGGTTGAATGGGTGCAAAACATCCAAGATAATAGCAATGTTTCGTGCATCATCGATGAGAGATTGGGGAATAGCTTCACAGGTGAAGCTATGGAAGGGTTCATACACTTGATTATGCGATGTTTGGAACCTTCAAGTGAGAGGCGACCAGCCATGAGCCATGTGGTAATGGAGCTAGATCGAATACACGAGAAAGAGATTAGCTTGACAACAATAATGGGGGAAGGACCCTCCACTGTGATCCCAGGAAGTCAGTTATTTAGAGCGACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

381

Amino Acids

41.94

Weight (kDa)

6.07

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19250 AT3G19330 AT3G19330 AT3G19330 AT3G19330
fragaria_vesca	FvH4_6g54380 FvH4_6g54381
malus_domestica	MD09G1001900.v1.1 MD09G1002000.v1.1 MD17G1006100.v1.1 MD17G1006200.v1.1
prunus_persica	Prupe.3G314200_v2.0.a1 Prupe.3G314300_v2.0.a1
pyrus_communis	pycom111g00150 pycom17g00160
rosa_chinensis	RchiOBHm_Chr2g0176601 RchiOBHm_Chr2g0176611
rosa_laevigata	RLG00000022428
rosa_multiflora	Rmu_co8463679.1_g000001 Rmu_sc0001417.1_g000013 Rmu_sc0039568.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076270
rosa_rugosa	Rorug02G0596300
rosa_samantha	Rh2AG674400 Rh2BG685500 Rh2CG648700 Rh2CG648800 Rh2DG699600 Rh2DG699700
rosa_wichuraiana	Rw2G055320 Rw2G055330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	868
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	1 cut(s)	670
AclWI	GGATC	2 cut(s)	131, 1102
AcsI	RAATTY	4 cut(s)	232, 266, 347, 518
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	363, 446
AfiI	CCNNNNNNNGG	2 cut(s)	321, 868
AgsI	TTSAA	6 cut(s)	149, 296, 523, 610, 875, 1002
AjnI	CCWGG	4 cut(s)	328, 417, 867, 1111
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
Alw26I	GTCTC	2 cut(s)	15, 222
AlwI	GGATC	2 cut(s)	131, 1102
AlwNI	CAGNNNCTG	1 cut(s)	868
AoxI	GGCC	1 cut(s)	700
ApeKI	GCWGC	3 cut(s)	17, 35, 551
ApoI	RAATTY	4 cut(s)	232, 266, 347, 518
Asp700I	GAANNNNTTC	2 cut(s)	469, 941
AspS9I	GGNCC	2 cut(s)	701, 1094
AsuHPI	GGTGA	3 cut(s)	470, 760, 962
AvaII	GGWCC	1 cut(s)	1094
BarI	GAAGNNNNNNTAC	2 cut(s)	954, 986
BauI	CACGAG	1 cut(s)	1055
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	22, 29, 563
BccI	CCATC	5 cut(s)	148, 199, 293, 323, 712
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	4 cut(s)	330, 419, 869, 1113
BciVI	GTATCC	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	15, 222
BfaI	CTAG	6 cut(s)	221, 339, 515, 545, 644, 1043
BfmI	CTRYAG	2 cut(s)	36, 431
BfuI	GTATCC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	3 cut(s)	18, 36, 552
BlsI	GCNGC	3 cut(s)	19, 37, 553
Bme1390I	CCNGG	4 cut(s)	330, 419, 869, 1113
Bme18I	GGWCC	1 cut(s)	1094
BmgT120I	GGNCC	2 cut(s)	701, 1094
BmiI	GGNNCC	3 cut(s)	43, 996, 1096
BmrFI	CCNGG	4 cut(s)	330, 419, 869, 1113
BmsI	GCATC	5 cut(s)	294, 394, 649, 854, 924
BpiI	GAAGAC	1 cut(s)	163
BpmI	CTGGAG	2 cut(s)	726, 830
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	696
Bsa29I	ATCGAT	1 cut(s)	921
BsaAI	YACGTR	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	679, 1111
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 868
Bse1I	ACTGG	2 cut(s)	474, 496
Bse3DI	GCAATG	1 cut(s)	910
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	4 cut(s)	330, 419, 869, 1113
BseCI	ATCGAT	1 cut(s)	921
BseDI	CCNNGG	2 cut(s)	679, 1111
BseGI	GGATG	2 cut(s)	309, 888
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	321, 868
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	474, 496
BseXI	GCAGC	3 cut(s)	22, 29, 563
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	702
BshVI	ATCGAT	1 cut(s)	921
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	2 cut(s)	321, 868
BsmAI	GTCTC	2 cut(s)	15, 222
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	570
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	702
Bsp143I	GATC	4 cut(s)	136, 637, 1045, 1107
BspACI	CCGC	1 cut(s)	670
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	1 cut(s)	386
BspDI	ATCGAT	1 cut(s)	921
BspLI	GGNNCC	3 cut(s)	43, 996, 1096
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	2 cut(s)	131, 1102
BsrDI	GCAATG	1 cut(s)	910
BsrI	ACTGG	2 cut(s)	474, 496
BssECI	CCNNGG	2 cut(s)	679, 1111
BssMI	GATC	4 cut(s)	136, 637, 1045, 1107
BssNAI	GTATAC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	1055
BssT1I	CCWWGG	1 cut(s)	679
Bst1107I	GTATAC	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	1055
Bst2UI	CCWGG	4 cut(s)	330, 419, 869, 1113
Bst4CI	ACNGT	2 cut(s)	435, 1105
Bst6I	CTCTTC	1 cut(s)	679
BstBAI	YACGTR	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	700
BstDEI	CTNAG	2 cut(s)	373, 648
BstF5I	GGATG	2 cut(s)	309, 888
BstKTI	GATC	4 cut(s)	139, 640, 1048, 1110
BstMAI	GTCTC	2 cut(s)	15, 222
BstMBI	GATC	4 cut(s)	136, 637, 1045, 1107
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 41, 548, 653
BstNI	CCWGG	4 cut(s)	330, 419, 869, 1113
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	4 cut(s)	328, 417, 867, 1111
BstSFI	CTRYAG	2 cut(s)	36, 431
BstV1I	GCAGC	3 cut(s)	22, 29, 563
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BstZ17I	GTATAC	1 cut(s)	280
Bsu15I	ATCGAT	1 cut(s)	921
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	702
BsuTUI	ATCGAT	1 cut(s)	921
BtgZI	GCGATG	1 cut(s)	1000
BtsCI	GGATG	2 cut(s)	309, 888
BtsIMutI	CAGTG	3 cut(s)	244, 489, 1101
Cac8I	GCNNGC	1 cut(s)	700
CaiI	CAGNNNCTG	1 cut(s)	868
Cfr13I	GGNCC	2 cut(s)	701, 1094
ClaI	ATCGAT	1 cut(s)	921
CsiI	ACCWGGT	1 cut(s)	867
Csp6I	GTAC	2 cut(s)	362, 445
CviAII	CATG	4 cut(s)	161, 283, 1021, 1028
CviQI	GTAC	2 cut(s)	362, 445
DdeI	CTNAG	2 cut(s)	373, 648
DpnI	GATC	4 cut(s)	138, 639, 1047, 1109
DpnII	GATC	4 cut(s)	136, 637, 1045, 1107
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	1094
Eco57I	CTGAAG	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	1094
EcoRI	GAATTC	1 cut(s)	518
EcoRII	CCWGG	4 cut(s)	328, 417, 867, 1111
EcoT14I	CCWWGG	1 cut(s)	679
ErhI	CCWWGG	1 cut(s)	679
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	4 cut(s)	164, 286, 1024, 1031
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	4 cut(s)	160, 282, 1020, 1027
FauNDI	CATATG	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	18, 36, 552
FokI	GGATG	2 cut(s)	316, 875
Fsp4HI	GCNGC	3 cut(s)	18, 36, 552
FspBI	CTAG	6 cut(s)	221, 339, 515, 545, 644, 1043
GluI	GCNGC	3 cut(s)	18, 36, 552
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	2 cut(s)	726, 830
HaeIII	GGCC	1 cut(s)	702
Hin1II	CATG	4 cut(s)	164, 286, 1024, 1031
HinfI	GANTC	3 cut(s)	583, 666, 854
HphI	GGTGA	3 cut(s)	470, 760, 962
Hpy166II	GTNNAC	3 cut(s)	280, 364, 445
Hpy188I	TCNGA	5 cut(s)	121, 136, 204, 772, 853
Hpy188III	TCNNGA	6 cut(s)	111, 296, 344, 523, 743, 809
Hpy8I	GTNNAC	3 cut(s)	280, 364, 445
HpyAV	CCTTC	5 cut(s)	254, 815, 956, 1008, 1085
HpyCH4III	ACNGT	2 cut(s)	435, 1105
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	8 cut(s)	17, 38, 598, 656, 662, 698, 883, 915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 41, 548, 653
HpyF3I	CTNAG	2 cut(s)	373, 648
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	4 cut(s)	164, 286, 1024, 1031
Kzo9I	GATC	4 cut(s)	136, 637, 1045, 1107
LmnI	GCTCC	3 cut(s)	41, 745, 1039
Lsp1109I	GCAGC	3 cut(s)	22, 29, 563
LweI	GCATC	5 cut(s)	294, 394, 649, 854, 924
MabI	ACCWGGT	1 cut(s)	867
MaeI	CTAG	6 cut(s)	221, 339, 515, 545, 644, 1043
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	6 cut(s)	46, 397, 410, 476, 715, 779
MalI	GATC	4 cut(s)	138, 639, 1047, 1109
MboI	GATC	4 cut(s)	136, 637, 1045, 1107
MboII	GAAGA	9 cut(s)	123, 168, 221, 284, 563, 647, 696, 699, 840
MflI	RGATCY	1 cut(s)	637
MluCI	AATT	7 cut(s)	212, 232, 266, 347, 518, 673, 839
MlyI	GAGTC	2 cut(s)	592, 848
MmeI	TCCRAC	1 cut(s)	876
MnlI	CCTC	6 cut(s)	23, 268, 352, 739, 1002, 1108
MroXI	GAANNNNTTC	2 cut(s)	469, 941
MslI	CAYNNNNRTG	1 cut(s)	483
MspR9I	CCNGG	4 cut(s)	330, 419, 869, 1113
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	4 cut(s)	330, 419, 869, 1113
MwoI	GCNNNNNNNGC	4 cut(s)	14, 41, 548, 653
NdeI	CATATG	1 cut(s)	77
NdeII	GATC	4 cut(s)	136, 637, 1045, 1107
NlaIII	CATG	4 cut(s)	164, 286, 1024, 1031
NlaIV	GGNNCC	3 cut(s)	43, 996, 1096
NmuCI	GTSAC	4 cut(s)	46, 476, 715, 779
NspI	RCATGY	1 cut(s)	164
PctI	GAATGC	1 cut(s)	499
PdmI	GAANNNNTTC	2 cut(s)	469, 941
PfeI	GAWTC	1 cut(s)	666
PflMI	CCANNNNNTGG	1 cut(s)	868
PkrI	GCNGC	3 cut(s)	19, 37, 553
PleI	GAGTC	2 cut(s)	591, 848
PpsI	GAGTC	2 cut(s)	591, 848
Ppu21I	YACGTR	1 cut(s)	506
PpuMI	RGGWCCY	1 cut(s)	1094
Psp5II	RGGWCCY	1 cut(s)	1094
Psp6I	CCWGG	4 cut(s)	328, 417, 867, 1111
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	4 cut(s)	328, 417, 867, 1111
PspN4I	GGNNCC	3 cut(s)	43, 996, 1096
PspPI	GGNCC	2 cut(s)	701, 1094
PspPPI	RGGWCCY	1 cut(s)	1094
PstI	CTGCAG	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	868
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	2 cut(s)	363, 446
RsaNI	GTAC	2 cut(s)	362, 445
RseI	CAYNNNNRTG	1 cut(s)	483
SatI	GCNGC	3 cut(s)	18, 36, 552
Sau3AI	GATC	4 cut(s)	136, 637, 1045, 1107
Sau96I	GGNCC	2 cut(s)	701, 1094
SchI	GAGTC	2 cut(s)	592, 848
ScrFI	CCNGG	4 cut(s)	330, 419, 869, 1113
SexAI	ACCWGGT	1 cut(s)	867
SfaNI	GCATC	5 cut(s)	294, 394, 649, 854, 924
SfcI	CTRYAG	2 cut(s)	36, 431
SinI	GGWCC	1 cut(s)	1094
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
Sse9I	AATT	7 cut(s)	212, 232, 266, 347, 518, 673, 839
SsiI	CCGC	1 cut(s)	670
SspI	AATATT	1 cut(s)	24
SspMI	CTAG	6 cut(s)	221, 339, 515, 545, 644, 1043
StyD4I	CCNGG	4 cut(s)	328, 417, 867, 1111
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	2 cut(s)	435, 1105
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	2 cut(s)	921, 1048
TasI	AATT	7 cut(s)	212, 232, 266, 347, 518, 673, 839
TfiI	GAWTC	1 cut(s)	666
TscAI	CASTG	3 cut(s)	244, 496, 1108
TseFI	GTSAC	4 cut(s)	46, 476, 715, 779
TseI	GCWGC	3 cut(s)	17, 35, 551
Tsp45I	GTSAC	4 cut(s)	46, 476, 715, 779
TspDTI	ATGAA	3 cut(s)	446, 648, 958
TspRI	CASTG	3 cut(s)	244, 496, 1108
Van91I	CCANNNNNTGG	1 cut(s)	868
VpaK11BI	GGWCC	1 cut(s)	1094
XapI	RAATTY	4 cut(s)	232, 266, 347, 518
XceI	RCATGY	1 cut(s)	164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1027
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	2 cut(s)	469, 941
XspI	CTAG	6 cut(s)	221, 339, 515, 545, 644, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.