Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004578

Physical Location & Seq

Genomic Coordinates Forward (+)

427212 .. 429539

Gene Structure 2328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1006100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCAGCGTCTCTTGCAGCAATATTAGGAGGTGCTGCAGGAGCCGTGGCTTTGGTGGGGATAAGTATCTTACTCATATGGTTCTGTATATCTCGCAGTAGGAGTGTTTCAAGAACTTCTGAAACGGGTTCTTCTGATCCTTCTGTTCAAGTGGGAAGACATGGTGGGGTTGAGTTGTCAATGCGAGAAACAAGGCGTTTTCAGATGGAAGAACTGTCTCTGGCCACCAAAAATTTCAGTGACAAAAATTTGATTGGGCAAGGGAAATTTGGGGAGGTGTATATGGGATTTCTCCAGGATGGGATGCTCGTAGCCATCAAAAAGCGACCTGGAACAGCTAGTCAGGAATTTATCAATGAGGTACACTATCTCTCAGCTATTCAGCATCGGAATATTGTTACTCTCTTGGGTTACTGCCAAGAAAATAATCTACAGTTTCTTGTGTACGAGTACATTCATAGTGGAAGTGTTTCCAGTCACTTGTACGGCACTGGTCAGCATTCACGTGAAAAGCTAGAATTCAAGAATCGTCTAACAATAGCTCAAGGGGCCGCTAAAGGTGATCATCTGCAAAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

194

Amino Acids

21.16

Weight (kDa)

8.93

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	80 - 170	1e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	83 - 187	1.2e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19250 AT3G19330 AT3G19330 AT3G19330 AT3G19330
fragaria_vesca	FvH4_6g54380 FvH4_6g54381
malus_domestica	MD09G1001900.v1.1 MD09G1002000.v1.1 MD17G1006100.v1.1 MD17G1006200.v1.1
prunus_persica	Prupe.3G314200_v2.0.a1 Prupe.3G314300_v2.0.a1
pyrus_communis	pycom111g00150 pycom17g00160
rosa_chinensis	RchiOBHm_Chr2g0176601 RchiOBHm_Chr2g0176611
rosa_laevigata	RLG00000022428
rosa_multiflora	Rmu_co8463679.1_g000001 Rmu_sc0001417.1_g000013 Rmu_sc0039568.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076270
rosa_rugosa	Rorug02G0596300
rosa_samantha	Rh2AG674400 Rh2BG685500 Rh2CG648700 Rh2CG648800 Rh2DG699600 Rh2DG699700
rosa_wichuraiana	Rw2G055320 Rw2G055330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	552
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	5 cut(s)	232, 247, 266, 347, 518
AcvI	CACGTG	1 cut(s)	506
AfaI	GTAC	4 cut(s)	363, 446, 452, 485
AgsI	TTSAA	3 cut(s)	111, 149, 523
AjnI	CCWGG	2 cut(s)	294, 328
AluBI	AGCT	4 cut(s)	338, 377, 514, 542
AluI	AGCT	4 cut(s)	338, 377, 514, 542
Alw26I	GTCTC	2 cut(s)	15, 222
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	2 cut(s)	222, 549
ApeKI	GCWGC	2 cut(s)	17, 35
ApoI	RAATTY	5 cut(s)	232, 247, 266, 347, 518
Asp700I	GAANNNNTTC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	572
BalI	TGGCCA	1 cut(s)	224
BbrPI	CACGTG	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	22, 29
BccI	CCATC	3 cut(s)	199, 293, 323
BceAI	ACGGC	2 cut(s)	29, 502
BciT130I	CCWGG	2 cut(s)	296, 330
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	2 cut(s)	15, 222
BfaI	CTAG	2 cut(s)	339, 515
BfmI	CTRYAG	2 cut(s)	36, 431
BisI	GCNGC	3 cut(s)	18, 36, 552
BlsI	GCNGC	3 cut(s)	19, 37, 553
Bme1390I	CCNGG	2 cut(s)	296, 330
BmgT120I	GGNCC	1 cut(s)	549
BmiI	GGNNCC	2 cut(s)	43, 550
BmrFI	CCNGG	2 cut(s)	296, 330
BmsI	GCATC	2 cut(s)	294, 394
BpiI	GAAGAC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	528
BsaAI	YACGTR	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	474, 496
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	296, 330
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	304, 309
BseJI	GATNNNNATC	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	474, 496
BseXI	GCAGC	2 cut(s)	22, 29
BshFI	GGCC	2 cut(s)	224, 551
BsmAI	GTCTC	2 cut(s)	15, 222
BsmBI	CGTCTC	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	224, 551
Bsp143I	GATC	2 cut(s)	136, 562
BspACI	CCGC	1 cut(s)	552
BspANI	GGCC	2 cut(s)	224, 551
BspCNI	CTCAG	1 cut(s)	386
BspLI	GGNNCC	2 cut(s)	43, 550
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	474, 496
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	136, 562
Bst2UI	CCWGG	2 cut(s)	296, 330
Bst4CI	ACNGT	2 cut(s)	216, 435
BstBAI	YACGTR	1 cut(s)	506
BstDEI	CTNAG	1 cut(s)	373
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	304, 309
BstKTI	GATC	2 cut(s)	139, 565
BstMAI	GTCTC	2 cut(s)	15, 222
BstMBI	GATC	2 cut(s)	136, 562
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 41, 548
BstNI	CCWGG	2 cut(s)	296, 330
BstSCI	CCNGG	2 cut(s)	294, 328
BstSFI	CTRYAG	2 cut(s)	36, 431
BstV1I	GCAGC	2 cut(s)	22, 29
BstV2I	GAAGAC	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	224, 551
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	304, 309
BtsIMutI	CAGTG	2 cut(s)	244, 489
Cfr13I	GGNCC	1 cut(s)	549
Csp6I	GTAC	4 cut(s)	362, 445, 451, 484
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	9 cut(s)	44, 50, 224, 314, 338, 377, 514, 542, 551
CviKI_1	RGCY	9 cut(s)	44, 50, 224, 314, 338, 377, 514, 542, 551
CviQI	GTAC	4 cut(s)	362, 445, 451, 484
DdeI	CTNAG	1 cut(s)	373
DpnI	GATC	2 cut(s)	138, 564
DpnII	GATC	2 cut(s)	136, 562
EaeI	YGGCCR	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	506
EcoRI	GAATTC	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	294, 328
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	1 cut(s)	164
FaiI	YATR	7 cut(s)	77, 79, 89, 162, 282, 284, 459
FatI	CATG	1 cut(s)	160
FauNDI	CATATG	1 cut(s)	77
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	3 cut(s)	18, 36, 552
FokI	GGATG	2 cut(s)	311, 316
Fsp4HI	GCNGC	3 cut(s)	18, 36, 552
FspBI	CTAG	2 cut(s)	339, 515
GluI	GCNGC	3 cut(s)	18, 36, 552
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	2 cut(s)	224, 551
Hin1II	CATG	1 cut(s)	164
HinfI	GANTC	1 cut(s)	526
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	2 cut(s)	364, 445
Hpy188I	TCNGA	4 cut(s)	121, 136, 204, 390
Hpy188III	TCNNGA	3 cut(s)	111, 344, 523
Hpy8I	GTNNAC	2 cut(s)	364, 445
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	2 cut(s)	216, 435
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	3 cut(s)	17, 38, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 41, 548
HpyF3I	CTNAG	1 cut(s)	373
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	136, 562
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	9 cut(s)	24, 206, 281, 308, 315, 329, 342, 477, 487
Lsp1109I	GCAGC	2 cut(s)	22, 29
LweI	GCATC	2 cut(s)	294, 394
MaeI	CTAG	2 cut(s)	339, 515
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	4 cut(s)	239, 397, 410, 476
MalI	GATC	2 cut(s)	138, 564
MboI	GATC	2 cut(s)	136, 562
MboII	GAAGA	3 cut(s)	123, 168, 221
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	5 cut(s)	232, 247, 266, 347, 518
MluNI	TGGCCA	1 cut(s)	224
MnlI	CCTC	3 cut(s)	23, 268, 352
Mox20I	TGGCCA	1 cut(s)	224
MroXI	GAANNNNTTC	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	296, 330
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	2 cut(s)	296, 330
MwoI	GCNNNNNNNGC	3 cut(s)	14, 41, 548
NdeI	CATATG	1 cut(s)	77
NdeII	GATC	2 cut(s)	136, 562
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	2 cut(s)	43, 550
NmuCI	GTSAC	2 cut(s)	239, 476
PctI	GAATGC	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	526
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	19, 37, 553
PmaCI	CACGTG	1 cut(s)	506
PmlI	CACGTG	1 cut(s)	506
Ppu21I	YACGTR	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	294, 328
PspCI	CACGTG	1 cut(s)	506
PspGI	CCWGG	2 cut(s)	294, 328
PspN4I	GGNNCC	2 cut(s)	43, 550
PspPI	GGNCC	1 cut(s)	549
PstI	CTGCAG	1 cut(s)	40
RsaI	GTAC	4 cut(s)	363, 446, 452, 485
RsaNI	GTAC	4 cut(s)	362, 445, 451, 484
RseI	CAYNNNNRTG	1 cut(s)	504
SatI	GCNGC	3 cut(s)	18, 36, 552
Sau3AI	GATC	2 cut(s)	136, 562
Sau96I	GGNCC	1 cut(s)	549
ScrFI	CCNGG	2 cut(s)	296, 330
SfaNI	GCATC	2 cut(s)	294, 394
SfcI	CTRYAG	2 cut(s)	36, 431
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
Sse9I	AATT	5 cut(s)	232, 247, 266, 347, 518
SsiI	CCGC	1 cut(s)	552
SspI	AATATT	2 cut(s)	24, 394
SspMI	CTAG	2 cut(s)	339, 515
StyD4I	CCNGG	2 cut(s)	294, 328
TaaI	ACNGT	2 cut(s)	216, 435
TaiI	ACGT	1 cut(s)	508
TasI	AATT	5 cut(s)	232, 247, 266, 347, 518
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	1 cut(s)	526
TscAI	CASTG	2 cut(s)	244, 496
TseFI	GTSAC	2 cut(s)	239, 476
TseI	GCWGC	2 cut(s)	17, 35
Tsp45I	GTSAC	2 cut(s)	239, 476
TspDTI	ATGAA	1 cut(s)	446
TspRI	CASTG	2 cut(s)	244, 496
XapI	RAATTY	5 cut(s)	232, 247, 266, 347, 518
XmnI	GAANNNNTTC	1 cut(s)	469
XspI	CTAG	2 cut(s)	339, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.