Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8463679.1

Orthogroup ID

OG0004578

Physical Location & Seq

Genomic Coordinates Reverse (-)

1062 .. 1886

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8463679.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

gaggccctccgccgcgccgagtccaactccctcactcttctcgtctccgactacttccgccacagcgaggacgccacccgtctctgtctgctcctccaccgcagcgtctatggagcacgtcacctttacgcccctctccatcaactgctcgacgttttcgaaccagactcgagcctcaaccaatctcagtgcagtcacaccttggacatcttccaacaattcgacagccacgacaaccccttccccgcccccgactcccacaacttcgacgacacgcgccgcctcttcaacgacctcaagcagcagctcgatcgccgcctccgcgcctcccgctccaaaattcgccgcattcgccgagccaatgttgcgtccactatatgcctcattggaactgccgtgggagtagtggcttctgcggccgcaatcacggcccacgctctggcggcgtttgttgtggcggggcctttgtgctgcagcggcagcagagcaaacaaggaggttgcgcatatgaaacaagtggatgctgcggccaaggggacgtgtgtgctgaacaatgatctggcgaccattgaccggctggcgcggcgcctacatacggcggtggagggcgacaagcttctgattcggctgggattggagaggggagctcaagacaagcatcccattcaggaggtgcttaagcagctgcgcaagagccaccccaatttcctccaccttatcaacgaacttgatcaacatatatgcctctgctttaacaccgttaacagggccaggtcgctgcttctccaagagatccacaatctccaaacggaggcagccagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

274

Amino Acids

30.64

Weight (kDa)

8.84

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19250 AT3G19330 AT3G19330 AT3G19330 AT3G19330
fragaria_vesca	FvH4_6g54380 FvH4_6g54381
malus_domestica	MD09G1001900.v1.1 MD09G1002000.v1.1 MD17G1006100.v1.1 MD17G1006200.v1.1
prunus_persica	Prupe.3G314200_v2.0.a1 Prupe.3G314300_v2.0.a1
pyrus_communis	pycom111g00150 pycom17g00160
rosa_chinensis	RchiOBHm_Chr2g0176601 RchiOBHm_Chr2g0176611
rosa_laevigata	RLG00000022428
rosa_multiflora	Rmu_co8463679.1_g000001 Rmu_sc0001417.1_g000013 Rmu_sc0039568.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076270
rosa_rugosa	Rorug02G0596300
rosa_samantha	Rh2AG674400 Rh2BG685500 Rh2CG648700 Rh2CG648800 Rh2DG699600 Rh2DG699700
rosa_wichuraiana	Rw2G055320 Rw2G055330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	504, 689
AccB1I	GGYRCC	1 cut(s)	585
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccBSI	CCGCTC	1 cut(s)	333
AccII	CGCG	4 cut(s)	15, 277, 324, 583
AclWI	GGATC	1 cut(s)	787
AcoI	YGGCCR	2 cut(s)	417, 528
AcsI	RAATTY	1 cut(s)	339
AcyI	GRCGYC	2 cut(s)	72, 586
AfiI	CCNNNNNNNGG	6 cut(s)	67, 439, 573, 595, 765, 811
AflII	CTTAAG	1 cut(s)	677
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	1 cut(s)	289
AjiI	CACGTC	2 cut(s)	119, 540
AjnI	CCWGG	1 cut(s)	770
AluBI	AGCT	5 cut(s)	307, 616, 647, 685, 822
AluI	AGCT	5 cut(s)	307, 616, 647, 685, 822
Alw21I	GWGCWC	2 cut(s)	118, 649
Alw26I	GTCTC	2 cut(s)	49, 86
AlwI	GGATC	1 cut(s)	787
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	6 cut(s)	3, 417, 429, 461, 528, 768
ApoI	RAATTY	1 cut(s)	339
AspLEI	GCGC	7 cut(s)	17, 279, 326, 505, 583, 588, 690
AspS9I	GGNCC	4 cut(s)	4, 430, 461, 768
AsuHPI	GGTGA	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	159
AvaI	CYCGRG	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	585
BanII	GRGCYC	1 cut(s)	649
Bbv12I	GWGCWC	2 cut(s)	118, 649
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	3 cut(s)	380, 444, 612
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	772
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	49, 86
BfmI	CTRYAG	1 cut(s)	472
BfoI	RGCGCY	1 cut(s)	589
BfrI	CTTAAG	1 cut(s)	677
Bme1390I	CCNGG	1 cut(s)	772
BmeT110I	CYCGRG	1 cut(s)	169
BmgBI	CACGTC	2 cut(s)	119, 540
BmgT120I	GGNCC	4 cut(s)	4, 430, 461, 768
BmiI	GGNNCC	2 cut(s)	462, 587
BmrFI	CCNGG	1 cut(s)	772
BmsI	GCATC	2 cut(s)	511, 667
BplI	GAGNNNNNCTC	4 cut(s)	11, 43, 631, 663
Bpu14I	TTCGAA	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	281, 633
BsaHI	GRCGYC	2 cut(s)	72, 586
BsaJI	CCNNGG	3 cut(s)	201, 396, 531
Bsc4I	CCNNNNNNNGG	6 cut(s)	67, 439, 573, 595, 765, 811
Bse118I	RCCGGY	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	772
BseDI	CCNNGG	3 cut(s)	201, 396, 531
BseGI	GGATG	2 cut(s)	526, 658
BseLI	CCNNNNNNNGG	6 cut(s)	67, 439, 573, 595, 765, 811
BseMII	CTCAG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	83
BseX3I	CGGCCG	1 cut(s)	417
BseYI	CCCAGC	1 cut(s)	628
BsgI	GTGCAG	1 cut(s)	211
Bsh1236I	CGCG	4 cut(s)	15, 277, 324, 583
Bsh1285I	CGRYCG	2 cut(s)	313, 420
BshFI	GGCC	6 cut(s)	5, 419, 431, 463, 530, 770
BshNI	GGYRCC	1 cut(s)	585
BsiEI	CGRYCG	2 cut(s)	313, 420
BsiHKAI	GWGCWC	2 cut(s)	118, 649
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	574
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	6 cut(s)	67, 439, 573, 595, 765, 811
BsmAI	GTCTC	2 cut(s)	49, 86
BsmBI	CGTCTC	2 cut(s)	49, 86
BsmFI	GGGAC	1 cut(s)	550
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	6 cut(s)	5, 419, 431, 463, 530, 770
BsoBI	CYCGRG	1 cut(s)	169
Bsp119I	TTCGAA	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	118, 649
Bsp143I	GATC	4 cut(s)	310, 556, 730, 792
BspANI	GGCC	6 cut(s)	5, 419, 431, 463, 530, 770
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	4 cut(s)	15, 277, 324, 583
BspLI	GGNNCC	2 cut(s)	462, 587
BspMAI	CTGCAG	1 cut(s)	476
BspPI	GGATC	1 cut(s)	787
BspT104I	TTCGAA	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	585
BspTI	CTTAAG	1 cut(s)	677
BsrBI	CCGCTC	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	573
BssAI	RCCGGY	1 cut(s)	573
BssECI	CCNNGG	3 cut(s)	201, 396, 531
BssMI	GATC	4 cut(s)	310, 556, 730, 792
BssNI	GRCGYC	2 cut(s)	72, 586
BssT1I	CCWWGG	2 cut(s)	201, 531
Bst2UI	CCWGG	1 cut(s)	772
Bst4CI	ACNGT	1 cut(s)	760
Bst6I	CTCTTC	2 cut(s)	42, 290
BstACI	GRCGYC	2 cut(s)	72, 586
BstAFI	CTTAAG	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	579, 820
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	526, 658
BstFNI	CGCG	4 cut(s)	15, 277, 324, 583
BstH2I	RGCGCY	1 cut(s)	589
BstHHI	GCGC	7 cut(s)	17, 279, 326, 505, 583, 588, 690
BstKTI	GATC	4 cut(s)	313, 559, 733, 795
BstMAI	GTCTC	2 cut(s)	49, 86
BstMBI	GATC	4 cut(s)	310, 556, 730, 792
BstMCI	CGRYCG	2 cut(s)	313, 420
BstNI	CCWGG	1 cut(s)	772
BstSCI	CCNGG	1 cut(s)	770
BstSFI	CTRYAG	1 cut(s)	472
BstUI	CGCG	4 cut(s)	15, 277, 324, 583
BstX2I	RGATCY	1 cut(s)	792
BstYI	RGATCY	1 cut(s)	792
BstZI	CGGCCG	1 cut(s)	417
BsuRI	GGCC	6 cut(s)	5, 419, 431, 463, 530, 770
BtgI	CCRYGG	1 cut(s)	396
BtrI	CACGTC	2 cut(s)	119, 540
BtsCI	GGATG	2 cut(s)	526, 658
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	579, 820
CciNI	GCGGCCGC	1 cut(s)	417
CfoI	GCGC	7 cut(s)	17, 279, 326, 505, 583, 588, 690
Cfr10I	RCCGGY	1 cut(s)	573
Cfr13I	GGNCC	4 cut(s)	4, 430, 461, 768
CseI	GACGC	3 cut(s)	80, 94, 357
DdeI	CTNAG	1 cut(s)	186
DinI	GGCGCC	1 cut(s)	587
DpnI	GATC	4 cut(s)	312, 558, 732, 794
DpnII	GATC	4 cut(s)	310, 556, 730, 792
EaeI	YGGCCR	2 cut(s)	417, 528
EagI	CGGCCG	1 cut(s)	417
Eam1104I	CTCTTC	2 cut(s)	42, 290
EarI	CTCTTC	2 cut(s)	42, 290
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	647
EclXI	CGGCCG	1 cut(s)	417
Eco130I	CCWWGG	2 cut(s)	201, 531
Eco24I	GRGCYC	1 cut(s)	649
Eco52I	CGGCCG	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	647
Eco88I	CYCGRG	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	647
EcoO109I	RGGNCCY	2 cut(s)	4, 461
EcoRII	CCWGG	1 cut(s)	770
EcoT14I	CCWWGG	2 cut(s)	201, 531
EcoT38I	GRGCYC	1 cut(s)	649
EgeI	GGCGCC	1 cut(s)	587
EheI	GGCGCC	1 cut(s)	587
ErhI	CCWWGG	2 cut(s)	201, 531
Esp3I	CGTCTC	2 cut(s)	49, 86
FaiI	YATR	9 cut(s)	111, 377, 379, 507, 509, 594, 738, 740, 742
FaqI	GGGAC	1 cut(s)	550
FauI	CCCGC	3 cut(s)	253, 338, 451
FauNDI	CATATG	1 cut(s)	507
FbaI	TGATCA	1 cut(s)	730
FokI	GGATG	2 cut(s)	533, 645
FriOI	GRGCYC	1 cut(s)	649
FspI	TGCGCA	2 cut(s)	504, 689
GlaI	GCGC	7 cut(s)	16, 278, 325, 504, 582, 587, 689
GsaI	CCCAGC	1 cut(s)	632
HaeII	RGCGCY	1 cut(s)	589
HaeIII	GGCC	6 cut(s)	5, 419, 431, 463, 530, 770
HapII	CCGG	1 cut(s)	574
HgaI	GACGC	3 cut(s)	80, 94, 357
HhaI	GCGC	7 cut(s)	17, 279, 326, 505, 583, 588, 690
Hin1I	GRCGYC	2 cut(s)	72, 586
Hin6I	GCGC	7 cut(s)	15, 277, 324, 503, 581, 586, 688
HinP1I	GCGC	7 cut(s)	15, 277, 324, 503, 581, 586, 688
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	4 cut(s)	20, 167, 254, 622
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	1 cut(s)	574
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	372, 763
Hpy188I	TCNGA	2 cut(s)	49, 621
Hpy188III	TCNNGA	2 cut(s)	650, 668
Hpy8I	GTNNAC	2 cut(s)	372, 763
Hpy99I	CGWCG	2 cut(s)	155, 272
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4IV	ACGT	3 cut(s)	118, 153, 539
HpyCH4V	TGCA	2 cut(s)	192, 474
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	3 cut(s)	118, 153, 539
Hsp92I	GRCGYC	2 cut(s)	72, 586
HspAI	GCGC	7 cut(s)	15, 277, 324, 503, 581, 586, 688
KasI	GGCGCC	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	730
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	4 cut(s)	310, 556, 730, 792
LmnI	GCTCC	4 cut(s)	96, 113, 338, 644
LweI	GCATC	2 cut(s)	511, 667
MaeII	ACGT	3 cut(s)	118, 153, 539
MaeIII	GTNAC	2 cut(s)	119, 194
MalI	GATC	4 cut(s)	312, 558, 732, 794
MbiI	CCGCTC	1 cut(s)	333
MboI	GATC	4 cut(s)	310, 556, 730, 792
MboII	GAAGA	3 cut(s)	29, 202, 277
MflI	RGATCY	1 cut(s)	792
MhlI	GDGCHC	2 cut(s)	118, 649
MluCI	AATT	3 cut(s)	218, 339, 703
Mly113I	GGCGCC	1 cut(s)	586
MlyI	GAGTC	3 cut(s)	29, 161, 248
MmeI	TCCRAC	3 cut(s)	48, 72, 238
MseI	TTAA	3 cut(s)	678, 753, 762
MspA1I	CMGCKG	3 cut(s)	477, 685, 822
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	1 cut(s)	772
MteI	GCGCNGCGC	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	772
MvnI	CGCG	4 cut(s)	15, 277, 324, 583
NarI	GGCGCC	1 cut(s)	586
NdeI	CATATG	1 cut(s)	507
NdeII	GATC	4 cut(s)	310, 556, 730, 792
NlaIV	GGNNCC	2 cut(s)	462, 587
NmeAIII	GCCGAG	2 cut(s)	43, 380
NmuCI	GTSAC	2 cut(s)	119, 194
NotI	GCGGCCGC	1 cut(s)	417
NsbI	TGCGCA	2 cut(s)	504, 689
NspV	TTCGAA	1 cut(s)	159
PaeR7I	CTCGAG	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 228
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	622
PflMI	CCANNNNNTGG	1 cut(s)	439
Ple19I	CGATCG	1 cut(s)	313
PleI	GAGTC	3 cut(s)	28, 161, 248
PluTI	GGCGCC	1 cut(s)	589
PpsI	GAGTC	3 cut(s)	28, 161, 248
Psp124BI	GAGCTC	1 cut(s)	649
Psp6I	CCWGG	1 cut(s)	770
PspFI	CCCAGC	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	770
PspN4I	GGNNCC	2 cut(s)	462, 587
PspPI	GGNCC	4 cut(s)	4, 430, 461, 768
PspXI	VCTCGAGB	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	792
PvuI	CGATCG	1 cut(s)	313
PvuII	CAGCTG	2 cut(s)	685, 822
SacI	GAGCTC	1 cut(s)	649
SaqAI	TTAA	3 cut(s)	678, 753, 762
Sau3AI	GATC	4 cut(s)	310, 556, 730, 792
Sau96I	GGNCC	4 cut(s)	4, 430, 461, 768
SchI	GAGTC	3 cut(s)	29, 161, 248
ScrFI	CCNGG	1 cut(s)	772
SduI	GDGCHC	2 cut(s)	118, 649
SfaNI	GCATC	2 cut(s)	511, 667
SfcI	CTRYAG	1 cut(s)	472
SfoI	GGCGCC	1 cut(s)	587
Sfr274I	CTCGAG	1 cut(s)	169
SfuI	TTCGAA	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	169
SmlI	CTYRAG	4 cut(s)	169, 296, 648, 677
SmoI	CTYRAG	4 cut(s)	169, 296, 648, 677
Sse9I	AATT	3 cut(s)	218, 339, 703
SspDI	GGCGCC	1 cut(s)	585
SstI	GAGCTC	1 cut(s)	649
StyD4I	CCNGG	1 cut(s)	770
StyI	CCWWGG	2 cut(s)	201, 531
TaaI	ACNGT	1 cut(s)	760
TaiI	ACGT	3 cut(s)	121, 156, 542
TaqI	TCGA	6 cut(s)	150, 159, 170, 222, 267, 309
TasI	AATT	3 cut(s)	218, 339, 703
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	3 cut(s)	678, 753, 762
Tru9I	TTAA	3 cut(s)	678, 753, 762
TscAI	CASTG	1 cut(s)	194
TseFI	GTSAC	2 cut(s)	119, 194
Tsp45I	GTSAC	2 cut(s)	119, 194
TspDTI	ATGAA	1 cut(s)	524
TspGWI	ACGGA	1 cut(s)	824
TspRI	CASTG	1 cut(s)	194
Van91I	CCANNNNNTGG	1 cut(s)	439
Vha464I	CTTAAG	1 cut(s)	677
XapI	RAATTY	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XhoI	CTCGAG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.