RchiOBHm_Chr2g0176601

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004578
Physical Location & Seq
Reverse (-)
88346656 .. 88348116
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54360

Sequence Viewer

Length: 1053 bp
ATGTCTCCATCTCATCCTCTCCCACCTTCCCAATCGCAAGGAACATCAACGTCCGAGGGCAGCCCTGCTAGGTCACCCTTGTCCCACGAGTACAGCCTCGCCGTCGAAAGCACTTCCTACAATGAGATTTGGTCTAAGGTTCACGTCAATCAACAACATGAGGATGGGGATGAGGAAGACCAACTGGTATTGGAGCGAGTGCTTCAGCCCAACCGACAGTGCGTGGAAGAGGCCCTCCGCCGCGCCGAGTCCAACTCCCTCACTCTTCTCGTCTCCGACTACTTCCGCCACAGCGAGGACGCCACCCGTCTCTGTCTGCTCCTCCACCGCAGCGTCTATGGAGCACGTCACCTTTACGCCCCTCTCCATCAACTGCTCGACGTTTTCGAACCAGACTCGAGCCTCAACCAATCTCAGTGCAGTCACGCCTTGGACATCTTCCAACAATTCGACAGCCACGACAACCCCTTCCCCGCCCCCGACTCCCACAACTTCGACGACACGCGCCGCCTCTTCAACGACCTCAAGCAGCAGCTCGATCGCCGCCTCCGCGCCTCCCGCTCCAAAATTCGCCGCATTCGCCGAGCCAATGTTGCGTCCGCTATATGCCTCATTGGAACTGCCGTTGGGGTAGTGGCTTCTGCGGCCGCAATCACGGCCCACGCTCTGGCGGCGTTTGTTGTGGCGGGGCCTTTGTGCTGCAGCGGCAGCAGAGCAAACAAGGAGGTTGCGCATATGAAACAAGTGGATGCTGCGGCCAAGGGGACGTGTGTGCTGAACAATGATCTGGCGACCATTGACCGGCTGGCGCGGCGCCTACATACGGCGGTGGAGGGCGACAAGCTTCTGATTCGGCTGGGATTGGAGAGGGGAGCTCAAGACAAGCATCCCATTCAGGAGGTGCTTAAGCAGCTGCGCAAGAGCCACCCCAATTTCCTCCACCTTATCAACGAACTTGATCAACATATATGCCTCTGCTTTAACACCGTTAACAGGGCCAGGTCGCTGCTTCTCCAAGAGATCCACAATCTCCAAACAGAGGCAGCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

350

Amino Acids

39.03

Weight (kDa)

6.67

Isoelectric Point (pI)

59.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 83 - 341 2.8e-12 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 732, 917
AccB1I GGYRCC 1 cut(s) 813
AccB7I CCANNNNNTGG 1 cut(s) 667
AccBSI CCGCTC 1 cut(s) 561
AccII CGCG 4 cut(s) 243, 505, 552, 811
AclWI GGATC 1 cut(s) 1015
AcoI YGGCCR 2 cut(s) 645, 756
AcsI RAATTY 1 cut(s) 567
AcuI CTGAAG 1 cut(s) 188
AcyI GRCGYC 2 cut(s) 300, 814
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 6 cut(s) 295, 667, 801, 823, 993, 1039
AflII CTTAAG 1 cut(s) 905
AflIII ACRYGT 1 cut(s) 767
AgsI TTSAA 1 cut(s) 517
AjiI CACGTC 3 cut(s) 145, 347, 768
AjnI CCWGG 1 cut(s) 998
AluBI AGCT 5 cut(s) 535, 844, 875, 913, 1050
AluI AGCT 5 cut(s) 535, 844, 875, 913, 1050
Alw21I GWGCWC 2 cut(s) 346, 877
Alw26I GTCTC 3 cut(s) 9, 277, 314
AlwI GGATC 1 cut(s) 1015
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 6 cut(s) 231, 645, 657, 689, 756, 996
ApoI RAATTY 1 cut(s) 567
AspLEI GCGC 7 cut(s) 245, 507, 554, 733, 811, 816, 918
AspS9I GGNCC 4 cut(s) 232, 658, 689, 996
AsuHPI GGTGA 2 cut(s) 66, 341
AsuII TTCGAA 1 cut(s) 387
AvaI CYCGRG 1 cut(s) 397
BanI GGYRCC 1 cut(s) 813
BanII GRGCYC 1 cut(s) 877
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 346, 877
BccI CCATC 3 cut(s) 16, 158, 375
BceAI ACGGC 4 cut(s) 86, 608, 672, 840
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 1 cut(s) 1000
BclI TGATCA 1 cut(s) 958
BcoDI GTCTC 3 cut(s) 9, 277, 314
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 700
BfoI RGCGCY 1 cut(s) 817
BfrI CTTAAG 1 cut(s) 905
Bme1390I CCNGG 1 cut(s) 1000
BmeT110I CYCGRG 1 cut(s) 397
BmgBI CACGTC 3 cut(s) 145, 347, 768
BmgT120I GGNCC 4 cut(s) 232, 658, 689, 996
BmiI GGNNCC 2 cut(s) 690, 815
BmrFI CCNGG 1 cut(s) 1000
BmsI GCATC 2 cut(s) 739, 895
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 4 cut(s) 239, 271, 859, 891
Bpu14I TTCGAA 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 509, 861
BsaHI GRCGYC 2 cut(s) 300, 814
BsaJI CCNNGG 3 cut(s) 54, 429, 759
Bsc4I CCNNNNNNNGG 6 cut(s) 295, 667, 801, 823, 993, 1039
Bse118I RCCGGY 1 cut(s) 801
Bse1I ACTGG 1 cut(s) 189
BseBI CCWGG 1 cut(s) 1000
BseDI CCNNGG 3 cut(s) 54, 429, 759
BseGI GGATG 5 cut(s) 13, 169, 175, 754, 886
BseLI CCNNNNNNNGG 6 cut(s) 295, 667, 801, 823, 993, 1039
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 311
BseX3I CGGCCG 1 cut(s) 645
BseYI CCCAGC 1 cut(s) 856
BsgI GTGCAG 1 cut(s) 439
Bsh1236I CGCG 4 cut(s) 243, 505, 552, 811
Bsh1285I CGRYCG 2 cut(s) 541, 648
BshFI GGCC 6 cut(s) 233, 647, 659, 691, 758, 998
BshNI GGYRCC 1 cut(s) 813
BsiEI CGRYCG 2 cut(s) 541, 648
BsiHKAI GWGCWC 2 cut(s) 346, 877
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 1 cut(s) 802
BslFI GGGAC 2 cut(s) 67, 778
BslI CCNNNNNNNGG 6 cut(s) 295, 667, 801, 823, 993, 1039
BsmAI GTCTC 3 cut(s) 9, 277, 314
BsmBI CGTCTC 2 cut(s) 277, 314
BsmFI GGGAC 2 cut(s) 67, 778
BsmI GAATGC 1 cut(s) 576
BsnI GGCC 6 cut(s) 233, 647, 659, 691, 758, 998
BsoBI CYCGRG 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 387
Bsp1286I GDGCHC 2 cut(s) 346, 877
Bsp143I GATC 4 cut(s) 538, 784, 958, 1020
BspANI GGCC 6 cut(s) 233, 647, 659, 691, 758, 998
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 4 cut(s) 243, 505, 552, 811
BspLI GGNNCC 2 cut(s) 690, 815
BspMAI CTGCAG 1 cut(s) 704
BspPI GGATC 1 cut(s) 1015
BspT104I TTCGAA 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 813
BspTI CTTAAG 1 cut(s) 905
BsrBI CCGCTC 1 cut(s) 561
BsrFI RCCGGY 1 cut(s) 801
BsrI ACTGG 1 cut(s) 189
BssAI RCCGGY 1 cut(s) 801
BssECI CCNNGG 3 cut(s) 54, 429, 759
BssMI GATC 4 cut(s) 538, 784, 958, 1020
BssNI GRCGYC 2 cut(s) 300, 814
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 2 cut(s) 429, 759
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 1000
Bst4CI ACNGT 2 cut(s) 219, 988
Bst6I CTCTTC 3 cut(s) 222, 270, 518
BstACI GRCGYC 2 cut(s) 300, 814
BstAFI CTTAAG 1 cut(s) 905
BstBI TTCGAA 1 cut(s) 387
BstC8I GCNNGC 2 cut(s) 807, 1048
BstDEI CTNAG 2 cut(s) 135, 414
BstEII GGTNACC 1 cut(s) 72
BstF5I GGATG 5 cut(s) 13, 169, 175, 754, 886
BstFNI CGCG 4 cut(s) 243, 505, 552, 811
BstH2I RGCGCY 1 cut(s) 817
BstHHI GCGC 7 cut(s) 245, 507, 554, 733, 811, 816, 918
BstKTI GATC 4 cut(s) 541, 787, 961, 1023
BstMAI GTCTC 3 cut(s) 9, 277, 314
BstMBI GATC 4 cut(s) 538, 784, 958, 1020
BstMCI CGRYCG 2 cut(s) 541, 648
BstNI CCWGG 1 cut(s) 1000
BstPI GGTNACC 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 998
BstSFI CTRYAG 1 cut(s) 700
BstUI CGCG 4 cut(s) 243, 505, 552, 811
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 1020
BstYI RGATCY 1 cut(s) 1020
BstZI CGGCCG 1 cut(s) 645
BsuRI GGCC 6 cut(s) 233, 647, 659, 691, 758, 998
BtrI CACGTC 3 cut(s) 145, 347, 768
BtsCI GGATG 5 cut(s) 13, 169, 175, 754, 886
BtsIMutI CAGTG 2 cut(s) 224, 422
Cac8I GCNNGC 2 cut(s) 807, 1048
CciNI GCGGCCGC 1 cut(s) 645
CfoI GCGC 7 cut(s) 245, 507, 554, 733, 811, 816, 918
Cfr10I RCCGGY 1 cut(s) 801
Cfr13I GGNCC 4 cut(s) 232, 658, 689, 996
CseI GACGC 3 cut(s) 308, 322, 585
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 158
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 2 cut(s) 135, 414
DinI GGCGCC 1 cut(s) 815
DpnI GATC 4 cut(s) 540, 786, 960, 1022
DpnII GATC 4 cut(s) 538, 784, 958, 1020
EaeI YGGCCR 2 cut(s) 645, 756
EagI CGGCCG 1 cut(s) 645
Eam1104I CTCTTC 3 cut(s) 222, 270, 518
EarI CTCTTC 3 cut(s) 222, 270, 518
EciI GGCGGA 2 cut(s) 227, 275
Ecl136II GAGCTC 1 cut(s) 875
EclXI CGGCCG 1 cut(s) 645
Eco130I CCWWGG 2 cut(s) 429, 759
Eco24I GRGCYC 1 cut(s) 877
Eco52I CGGCCG 1 cut(s) 645
Eco53kI GAGCTC 1 cut(s) 875
Eco57I CTGAAG 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 397
Eco91I GGTNACC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 875
EcoO109I RGGNCCY 2 cut(s) 232, 689
EcoO65I GGTNACC 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 998
EcoT14I CCWWGG 2 cut(s) 429, 759
EcoT38I GRGCYC 1 cut(s) 877
EgeI GGCGCC 1 cut(s) 815
EheI GGCGCC 1 cut(s) 815
ErhI CCWWGG 2 cut(s) 429, 759
Esp3I CGTCTC 2 cut(s) 277, 314
FaeI CATG 1 cut(s) 161
FaqI GGGAC 2 cut(s) 67, 778
FatI CATG 1 cut(s) 157
FauI CCCGC 3 cut(s) 481, 566, 679
FauNDI CATATG 1 cut(s) 735
FbaI TGATCA 1 cut(s) 958
FokI GGATG 4 cut(s) 176, 182, 761, 873
FriOI GRGCYC 1 cut(s) 877
FspBI CTAG 1 cut(s) 69
FspI TGCGCA 2 cut(s) 732, 917
GlaI GCGC 7 cut(s) 244, 506, 553, 732, 810, 815, 917
GsaI CCCAGC 1 cut(s) 860
HaeII RGCGCY 1 cut(s) 817
HaeIII GGCC 6 cut(s) 233, 647, 659, 691, 758, 998
HapII CCGG 1 cut(s) 802
HgaI GACGC 3 cut(s) 308, 322, 585
HhaI GCGC 7 cut(s) 245, 507, 554, 733, 811, 816, 918
Hin1I GRCGYC 2 cut(s) 300, 814
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 7 cut(s) 243, 505, 552, 731, 809, 814, 916
HinP1I GCGC 7 cut(s) 243, 505, 552, 731, 809, 814, 916
HincII GTYRAC 1 cut(s) 991
HindII GTYRAC 1 cut(s) 991
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 4 cut(s) 248, 395, 482, 850
HpaI GTTAAC 1 cut(s) 991
HpaII CCGG 1 cut(s) 802
HphI GGTGA 2 cut(s) 66, 341
Hpy166II GTNNAC 2 cut(s) 142, 991
Hpy188I TCNGA 3 cut(s) 55, 277, 849
Hpy188III TCNNGA 2 cut(s) 878, 896
Hpy8I GTNNAC 2 cut(s) 142, 991
Hpy99I CGWCG 3 cut(s) 107, 383, 500
HpyAV CCTTC 2 cut(s) 36, 478
HpyCH4III ACNGT 2 cut(s) 219, 988
HpyCH4IV ACGT 5 cut(s) 50, 144, 346, 381, 767
HpyCH4V TGCA 2 cut(s) 420, 702
HpyF3I CTNAG 2 cut(s) 135, 414
HpySE526I ACGT 5 cut(s) 50, 144, 346, 381, 767
Hsp92I GRCGYC 2 cut(s) 300, 814
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 7 cut(s) 243, 505, 552, 731, 809, 814, 916
KasI GGCGCC 1 cut(s) 813
Ksp22I TGATCA 1 cut(s) 958
KspAI GTTAAC 1 cut(s) 991
Kzo9I GATC 4 cut(s) 538, 784, 958, 1020
LmnI GCTCC 5 cut(s) 193, 324, 341, 566, 872
LweI GCATC 2 cut(s) 739, 895
MaeI CTAG 1 cut(s) 69
MaeII ACGT 5 cut(s) 50, 144, 346, 381, 767
MaeIII GTNAC 3 cut(s) 72, 347, 422
MalI GATC 4 cut(s) 540, 786, 960, 1022
MbiI CCGCTC 1 cut(s) 561
MboI GATC 4 cut(s) 538, 784, 958, 1020
MboII GAAGA 5 cut(s) 188, 239, 257, 430, 505
MflI RGATCY 1 cut(s) 1020
MhlI GDGCHC 2 cut(s) 346, 877
MluCI AATT 3 cut(s) 446, 567, 931
Mly113I GGCGCC 1 cut(s) 814
MlyI GAGTC 3 cut(s) 257, 389, 476
MmeI TCCRAC 3 cut(s) 276, 300, 466
MseI TTAA 3 cut(s) 906, 981, 990
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 3 cut(s) 705, 913, 1050
MspCI CTTAAG 1 cut(s) 905
MspI CCGG 1 cut(s) 802
MspR9I CCNGG 1 cut(s) 1000
MteI GCGCNGCGC 1 cut(s) 812
Mva1269I GAATGC 1 cut(s) 576
MvaI CCWGG 1 cut(s) 1000
MvnI CGCG 4 cut(s) 243, 505, 552, 811
NarI GGCGCC 1 cut(s) 814
NdeI CATATG 1 cut(s) 735
NdeII GATC 4 cut(s) 538, 784, 958, 1020
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 690, 815
NmeAIII GCCGAG 2 cut(s) 271, 608
NmuCI GTSAC 3 cut(s) 72, 347, 422
NotI GCGGCCGC 1 cut(s) 645
NsbI TGCGCA 2 cut(s) 732, 917
NspV TTCGAA 1 cut(s) 387
PaeR7I CTCGAG 1 cut(s) 397
PcsI WCGNNNNNNNCGW 2 cut(s) 384, 456
PctI GAATGC 1 cut(s) 576
PfeI GAWTC 1 cut(s) 850
PflMI CCANNNNNTGG 1 cut(s) 667
Ple19I CGATCG 1 cut(s) 541
PleI GAGTC 3 cut(s) 256, 389, 476
PluTI GGCGCC 1 cut(s) 817
PpsI GAGTC 3 cut(s) 256, 389, 476
Psp124BI GAGCTC 1 cut(s) 877
Psp6I CCWGG 1 cut(s) 998
PspEI GGTNACC 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 856
PspGI CCWGG 1 cut(s) 998
PspN4I GGNNCC 2 cut(s) 690, 815
PspPI GGNCC 4 cut(s) 232, 658, 689, 996
PspXI VCTCGAGB 1 cut(s) 397
PstI CTGCAG 1 cut(s) 704
PsuI RGATCY 1 cut(s) 1020
PvuI CGATCG 1 cut(s) 541
PvuII CAGCTG 2 cut(s) 913, 1050
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 162
SacI GAGCTC 1 cut(s) 877
SaqAI TTAA 3 cut(s) 906, 981, 990
Sau3AI GATC 4 cut(s) 538, 784, 958, 1020
Sau96I GGNCC 4 cut(s) 232, 658, 689, 996
SchI GAGTC 3 cut(s) 257, 389, 476
ScrFI CCNGG 1 cut(s) 1000
SduI GDGCHC 2 cut(s) 346, 877
SfaNI GCATC 2 cut(s) 739, 895
SfcI CTRYAG 1 cut(s) 700
SfoI GGCGCC 1 cut(s) 815
Sfr274I CTCGAG 1 cut(s) 397
SfuI TTCGAA 1 cut(s) 387
SlaI CTCGAG 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 4 cut(s) 397, 524, 876, 905
SmoI CTYRAG 4 cut(s) 397, 524, 876, 905
Sse9I AATT 3 cut(s) 446, 567, 931
SspDI GGCGCC 1 cut(s) 813
SspMI CTAG 1 cut(s) 69
SstI GAGCTC 1 cut(s) 877
StyD4I CCNGG 1 cut(s) 998
StyI CCWWGG 2 cut(s) 429, 759
TaaI ACNGT 2 cut(s) 219, 988
TaiI ACGT 5 cut(s) 53, 147, 349, 384, 770
TaqI TCGA 7 cut(s) 105, 378, 387, 398, 450, 495, 537
TasI AATT 3 cut(s) 446, 567, 931
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 1 cut(s) 850
Tru1I TTAA 3 cut(s) 906, 981, 990
Tru9I TTAA 3 cut(s) 906, 981, 990
TscAI CASTG 2 cut(s) 224, 422
TseFI GTSAC 3 cut(s) 72, 347, 422
Tsp45I GTSAC 3 cut(s) 72, 347, 422
TspDTI ATGAA 1 cut(s) 752
TspRI CASTG 2 cut(s) 224, 422
Van91I CCANNNNNTGG 1 cut(s) 667
Vha464I CTTAAG 1 cut(s) 905
XapI RAATTY 1 cut(s) 567
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XhoI CTCGAG 1 cut(s) 397
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.