Rmu_sc0039568.1_g000001

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039568.1
OG0004578
Physical Location & Seq
Reverse (-)
2 .. 376
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039568.1_g000001.1.cds

Sequence Viewer

Length: 308 bp
atgtctccatctcatcctctcccaccttcccaatcgcaaggaacatcaacgtccgagggcagccctgctaggtcacccttgtcccacgagtacagcctcgccgtcgaaagcacctcctacaatgagatttggtctaaggttcacgtcaatcaacaacatgaggacggggatgaggaagaccaactggtattggagcgagtgcttcagcccaaccgacagtgcgtggaagaggccctccgccgcgccgagtccaactccctcactcttctcgtctccgactacttccgccacagcgaggacgccacccg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

103

Amino Acids

11.59

Weight (kDa)

4.82

Isoelectric Point (pI)

83.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 243
AciI CCGC 3 cut(s) 238, 241, 286
AcuI CTGAAG 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 295
AjiI CACGTC 1 cut(s) 145
Alw26I GTCTC 2 cut(s) 9, 277
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 66
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 72
BccI CCATC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 9, 277
BfaI CTAG 1 cut(s) 69
BisI GCNGC 2 cut(s) 61, 241
BlsI GCNGC 2 cut(s) 62, 242
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 2 cut(s) 13, 175
BseLI CCNNNNNNNGG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 233
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 2 cut(s) 9, 277
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 1 cut(s) 233
BspACI CCGC 3 cut(s) 238, 241, 286
BspANI GGCC 1 cut(s) 233
BspFNI CGCG 1 cut(s) 243
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 300
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 2 cut(s) 222, 270
BstACI GRCGYC 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 135
BstEII GGTNACC 1 cut(s) 72
BstF5I GGATG 2 cut(s) 13, 175
BstFNI CGCG 1 cut(s) 243
BstHHI GCGC 1 cut(s) 245
BstMAI GTCTC 2 cut(s) 9, 277
BstPI GGTNACC 1 cut(s) 72
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 233
BtrI CACGTC 1 cut(s) 145
BtsCI GGATG 2 cut(s) 13, 175
BtsIMutI CAGTG 1 cut(s) 224
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 158
CviJI RGCY 4 cut(s) 63, 96, 208, 233
CviKI_1 RGCY 4 cut(s) 63, 96, 208, 233
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 222, 270
EarI CTCTTC 2 cut(s) 222, 270
EciI GGCGGA 2 cut(s) 227, 275
Eco57I CTGAAG 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 232
EcoO65I GGTNACC 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 1 cut(s) 161
FaiI YATR 1 cut(s) 159
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 61, 241
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 2 cut(s) 61, 241
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 244
GluI GCNGC 2 cut(s) 61, 241
HaeIII GGCC 1 cut(s) 233
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 1 cut(s) 248
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 55, 277
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 2 cut(s) 50, 144
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 2 cut(s) 50, 144
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 2 cut(s) 78, 170
Lsp1109I GCAGC 1 cut(s) 72
MaeI CTAG 1 cut(s) 69
MaeII ACGT 2 cut(s) 50, 144
MaeIII GTNAC 1 cut(s) 72
MboII GAAGA 3 cut(s) 188, 239, 257
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 276, 300
MvnI CGCG 1 cut(s) 243
NlaIII CATG 1 cut(s) 161
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 62, 242
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PspEI GGTNACC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 232
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SatI GCNGC 2 cut(s) 61, 241
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 1 cut(s) 257
SetI ASST 6 cut(s) 28, 53, 74, 116, 141, 147
SsiI CCGC 3 cut(s) 238, 241, 286
SspMI CTAG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 2 cut(s) 53, 147
TaqI TCGA 1 cut(s) 105
TatI WGTACW 1 cut(s) 90
TauI GCSGC 1 cut(s) 243
TscAI CASTG 1 cut(s) 224
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 1 cut(s) 60
Tsp45I GTSAC 1 cut(s) 72
TspRI CASTG 1 cut(s) 224
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.