Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004578

Physical Location & Seq

Genomic Coordinates Reverse (-)

91448810 .. 91451559

Gene Structure 2750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG699700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCAGCGTCTCTTGCAGCAATACTTGGAGGTGCTGCAGGAGCCGTGGCATTGGTGGGGATAATTATCATACTTATCGGGTTCTGTCTTTGCAATAGGAGTGTTTCGAGAACTTCTGAGACAGGTTCTTCTGATCCATCTGTTCAAGTGGGAAGACATGGTGGGGTTGAGTTGTCAATACGAGAAACAAGGCGTTTTCAGATGGAAGAATTGTCTCTGGCCACAAAAAATTTTAGTGATACAAATTTGATTGGGGTAGGAAAATTTGGGGAGGTGTATATGGGTTTTCTTCATGACGGTATGCTTGTAGCCATCAAAAAGCGATCTGGATTACCTAGTCAGGAGTTTATTAATGAGGTAAACTATCTCTCAGCTATTCAGCATCGGAATATTGTTACTCTGTTGGGCTACTGCCAGGAAAATAATCTGCAGTTTCTTGTGTATGAGTATATTCATAGTGGAAGTGTTTCGAGTCACTTATATGGCACTGGTCAGCATGTTCGTGAAAAGCTAGAATTCAAGAATCGACTATCAATAGCTCTAGGGGCAGCTAAAGGCTTGGCTTACCTTCACTCTTTGAGTCCTCGTCTGGTGCATAAGGACTTTAAAACAGCCAATGTTCTTGTAGATGAAAATTTCATTGCCAAGGTTGCAGATGCAGGAATTCGCAATTTCTTGGGAAAAGATATGGCAGGCCCATCTTCTCAAGTGCAAAATATCCAAGATGACGGCAATATTTCGAGCATCATCGATGAGAGATTGGGGAATAGCTTCACAGCTGAAGCTATGGAAAAGTTGATACAGTTGATAATAAGATGTGTAGAAGCTTCGAGTGAAAGGCGACCAGCGATGAGCTATGTGGTAATGGAACTAGAGGGGATACTTGAGAAAGAGATGAGCTTGACAACAATCATGGGGGAAGGAACCTCGACTGTGATCCCAGGAAGTCAGTTATTCAGAGCAACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

323

Amino Acids

35.15

Weight (kDa)

6.46

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	80 - 229	7.9e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	82 - 226	6.9e-28	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19250 AT3G19330 AT3G19330 AT3G19330 AT3G19330
fragaria_vesca	FvH4_6g54380 FvH4_6g54381
malus_domestica	MD09G1001900.v1.1 MD09G1002000.v1.1 MD17G1006100.v1.1 MD17G1006200.v1.1
prunus_persica	Prupe.3G314200_v2.0.a1 Prupe.3G314300_v2.0.a1
pyrus_communis	pycom111g00150 pycom17g00160
rosa_chinensis	RchiOBHm_Chr2g0176601 RchiOBHm_Chr2g0176611
rosa_laevigata	RLG00000022428
rosa_multiflora	Rmu_co8463679.1_g000001 Rmu_sc0001417.1_g000013 Rmu_sc0039568.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076270
rosa_rugosa	Rorug02G0596300
rosa_samantha	Rh2AG674400 Rh2BG685500 Rh2CG648700 Rh2CG648800 Rh2DG699600 Rh2DG699700
rosa_wichuraiana	Rw2G055320 Rw2G055330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	128, 931
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	6 cut(s)	229, 244, 263, 515, 634, 663
AcuI	CTGAAG	1 cut(s)	801
AgsI	TTSAA	2 cut(s)	146, 520
AjnI	CCWGG	2 cut(s)	414, 940
Alw26I	GTCTC	3 cut(s)	15, 113, 219
AlwI	GGATC	2 cut(s)	128, 931
AoxI	GGCC	2 cut(s)	219, 694
ApeKI	GCWGC	3 cut(s)	17, 35, 548
ApoI	RAATTY	6 cut(s)	229, 244, 263, 515, 634, 663
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	2 cut(s)	466, 770
AspS9I	GGNCC	1 cut(s)	695
BalI	TGGCCA	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	22, 29, 560
BccI	CCATC	4 cut(s)	145, 196, 320, 706
BceAI	ACGGC	2 cut(s)	29, 745
BciT130I	CCWGG	2 cut(s)	416, 942
BciVI	GTATCC	1 cut(s)	873
BcoDI	GTCTC	3 cut(s)	15, 113, 219
BfaI	CTAG	4 cut(s)	336, 512, 542, 872
BfmI	CTRYAG	2 cut(s)	36, 428
BfuI	GTATCC	1 cut(s)	873
BisI	GCNGC	3 cut(s)	18, 36, 549
BlsI	GCNGC	3 cut(s)	19, 37, 550
Bme1390I	CCNGG	2 cut(s)	416, 942
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	2 cut(s)	43, 925
BmrFI	CCNGG	2 cut(s)	416, 942
BmsI	GCATC	3 cut(s)	391, 646, 753
BpiI	GAAGAC	1 cut(s)	160
BpuEI	CTTGAG	2 cut(s)	690, 905
Bsa29I	ATCGAT	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	65
BsaJI	CCNNGG	3 cut(s)	45, 645, 940
Bse1I	ACTGG	1 cut(s)	493
Bse3DI	GCAATG	1 cut(s)	639
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	416, 942
BseCI	ATCGAT	1 cut(s)	750
BseDI	CCNNGG	3 cut(s)	45, 645, 940
BseJI	GATNNNNATC	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	108, 384
BseNI	ACTGG	1 cut(s)	493
BseXI	GCAGC	3 cut(s)	22, 29, 560
BshFI	GGCC	2 cut(s)	221, 696
BshVI	ATCGAT	1 cut(s)	750
BsmAI	GTCTC	3 cut(s)	15, 113, 219
BsmBI	CGTCTC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	221, 696
Bsp143I	GATC	3 cut(s)	133, 323, 936
BspANI	GGCC	2 cut(s)	221, 696
BspCNI	CTCAG	2 cut(s)	109, 383
BspDI	ATCGAT	1 cut(s)	750
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	43, 925
BspMAI	CTGCAG	2 cut(s)	40, 432
BspPI	GGATC	2 cut(s)	128, 931
BsrDI	GCAATG	1 cut(s)	639
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	3 cut(s)	45, 645, 940
BssMI	GATC	3 cut(s)	133, 323, 936
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	2 cut(s)	416, 942
Bst4CI	ACNGT	3 cut(s)	299, 804, 934
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	2 cut(s)	117, 370
BstDSI	CCRYGG	1 cut(s)	45
BstKTI	GATC	3 cut(s)	136, 326, 939
BstMAI	GTCTC	3 cut(s)	15, 113, 219
BstMBI	GATC	3 cut(s)	133, 323, 936
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 41, 545, 650
BstNI	CCWGG	2 cut(s)	416, 942
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	2 cut(s)	414, 940
BstSFI	CTRYAG	2 cut(s)	36, 428
BstV1I	GCAGC	3 cut(s)	22, 29, 560
BstV2I	GAAGAC	1 cut(s)	160
Bsu15I	ATCGAT	1 cut(s)	750
BsuI	GTATCC	1 cut(s)	873
BsuRI	GGCC	2 cut(s)	221, 696
BsuTUI	ATCGAT	1 cut(s)	750
BtgI	CCRYGG	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	863
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	694
CciI	TCATGA	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	695
ClaI	ATCGAT	1 cut(s)	750
CviAII	CATG	4 cut(s)	158, 293, 497, 913
DdeI	CTNAG	2 cut(s)	117, 370
DpnI	GATC	3 cut(s)	135, 325, 938
DpnII	GATC	3 cut(s)	133, 323, 936
DraI	TTTAAA	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	801
EcoRI	GAATTC	2 cut(s)	515, 663
EcoRII	CCWGG	2 cut(s)	414, 940
EcoT14I	CCWWGG	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	4 cut(s)	161, 296, 500, 916
FatI	CATG	4 cut(s)	157, 292, 496, 912
Fnu4HI	GCNGC	3 cut(s)	18, 36, 549
Fsp4HI	GCNGC	3 cut(s)	18, 36, 549
FspBI	CTAG	4 cut(s)	336, 512, 542, 872
GluI	GCNGC	3 cut(s)	18, 36, 549
HaeIII	GGCC	2 cut(s)	221, 696
Hin1II	CATG	4 cut(s)	161, 296, 500, 916
HindIII	AAGCTT	1 cut(s)	825
HinfI	GANTC	3 cut(s)	472, 523, 580
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	5 cut(s)	118, 133, 201, 387, 959
Hpy188III	TCNNGA	6 cut(s)	108, 293, 327, 341, 503, 520
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	578, 914
HpyCH4III	ACNGT	3 cut(s)	299, 804, 934
HpyCH4V	TGCA	8 cut(s)	17, 38, 93, 430, 595, 653, 659, 712
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 41, 545, 650
HpyF3I	CTNAG	2 cut(s)	117, 370
Hsp92II	CATG	4 cut(s)	161, 296, 500, 916
Kzo9I	GATC	3 cut(s)	133, 323, 936
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	3 cut(s)	22, 29, 560
LweI	GCATC	3 cut(s)	391, 646, 753
MaeI	CTAG	4 cut(s)	336, 512, 542, 872
MaeIII	GTNAC	2 cut(s)	394, 473
MalI	GATC	3 cut(s)	135, 325, 938
MboI	GATC	3 cut(s)	133, 323, 936
MboII	GAAGA	5 cut(s)	120, 165, 218, 281, 693
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	9 cut(s)	63, 209, 229, 244, 263, 515, 634, 663, 670
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	481, 589
MnlI	CCTC	6 cut(s)	23, 265, 349, 594, 868, 937
Mox20I	TGGCCA	1 cut(s)	221
MroXI	GAANNNNTTC	2 cut(s)	466, 770
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	2 cut(s)	351, 606
MslI	CAYNNNNRTG	2 cut(s)	480, 501
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	779
MspR9I	CCNGG	2 cut(s)	416, 942
MvaI	CCWGG	2 cut(s)	416, 942
MwoI	GCNNNNNNNGC	4 cut(s)	14, 41, 545, 650
NdeII	GATC	3 cut(s)	133, 323, 936
NlaIII	CATG	4 cut(s)	161, 296, 500, 916
NlaIV	GGNNCC	2 cut(s)	43, 925
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	500
PagI	TCATGA	1 cut(s)	292
PdmI	GAANNNNTTC	2 cut(s)	466, 770
PfeI	GAWTC	1 cut(s)	523
PkrI	GCNGC	3 cut(s)	19, 37, 550
PleI	GAGTC	2 cut(s)	480, 588
PpsI	GAGTC	2 cut(s)	480, 588
PshBI	ATTAAT	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	414, 940
PspGI	CCWGG	2 cut(s)	414, 940
PspN4I	GGNNCC	2 cut(s)	43, 925
PspPI	GGNCC	1 cut(s)	695
PstI	CTGCAG	2 cut(s)	40, 432
PvuII	CAGCTG	1 cut(s)	779
RseI	CAYNNNNRTG	2 cut(s)	480, 501
SaqAI	TTAA	2 cut(s)	351, 606
SatI	GCNGC	3 cut(s)	18, 36, 549
Sau3AI	GATC	3 cut(s)	133, 323, 936
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	2 cut(s)	481, 589
ScrFI	CCNGG	2 cut(s)	416, 942
SfaNI	GCATC	3 cut(s)	391, 646, 753
SfcI	CTRYAG	2 cut(s)	36, 428
SmiMI	CAYNNNNRTG	2 cut(s)	480, 501
SmlI	CTYRAG	2 cut(s)	705, 884
SmoI	CTYRAG	2 cut(s)	705, 884
Sse9I	AATT	9 cut(s)	63, 209, 229, 244, 263, 515, 634, 663, 670
SspI	AATATT	2 cut(s)	391, 736
SspMI	CTAG	4 cut(s)	336, 512, 542, 872
StyD4I	CCNGG	2 cut(s)	414, 940
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	3 cut(s)	299, 804, 934
TaqI	TCGA	7 cut(s)	107, 470, 526, 740, 750, 830, 929
TasI	AATT	9 cut(s)	63, 209, 229, 244, 263, 515, 634, 663, 670
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	2 cut(s)	351, 606
Tru9I	TTAA	2 cut(s)	351, 606
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	3 cut(s)	17, 35, 548
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	4 cut(s)	281, 443, 628, 645
TspRI	CASTG	1 cut(s)	493
VspI	ATTAAT	1 cut(s)	351
XapI	RAATTY	6 cut(s)	229, 244, 263, 515, 634, 663
XceI	RCATGY	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	466, 770
XspI	CTAG	4 cut(s)	336, 512, 542, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.