Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004578

Physical Location & Seq

Genomic Coordinates Reverse (-)

27160076 .. 27162141

Gene Structure 2066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G314200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGCTGCAATGTCTCTCTCTGAAATCATCGTCGTCAACAACCTCAATCTCACCAGCTGCTGCAGCTGCGGCTCCCGATATCCATTCTCATCCTCCCCCACCTCCCCGATCGCAAGGAGGAACGAGCTCTGAGGCCTCGCCCTCCGCCACTCTCACCCACGAGTACAGGCTCGCCGTCCAAACCCAGTCCTACAATGAGATTTGGTCTAGGATTCATGAGGTCCATGACCACCACCACCACCACCATGATGAGGTGGAGGGGGACTTGGATTCGAACTCGGACTCGGACTCGGAGAAAGAGAACCAACATGAGAGGCAGAGGCAGAGACAGCGGCTTCTTTTGGAGCAAGTGCTTCAGCCCAACCGACAGTGCGTGGAAGAGGCGCTTCGCCAAGCCAAGCCCAACTCTCTCACCCGTCTGGTCTCTGACTACTTCGACCAGAGCGAAAACACCACCCAAGTATGCCTCATGCTCCACCGCTACGTCTATCGAGCGCGTGAGCTCTATGCGCCTCTCCATCAACTCCTCGACGTTGTACAGTCGGAGGAGGAGTCTCTGAGCCTCAACCTCAGCCAATCCCAGTGCAGTCGGGCCTTGGAAGTCTTTCTCCAATTCGACCGCCACGACAACCCCTTCCCTTCCCCTGACGACTCCGACTCCCACAATTTCGACGACATGCTCCGCTGCTTCTCCCAGCTCAAGCACCAGCTCGACTCCCGCCTCCGCTCCTCCCGCTCCAGAATCCGACTCCTTCGCCGCGCCACTCTTGCCTCTGCCATCTGCTTCATTGGCACTGCCCTCGGAGTCGCCGTCTCTGCCGTCGCCATCACTGTCCATGCCCTCACTGCCGCCCTCGTCGTTGTTGCAGGGCCGCCTTTGTGCTGCACTCCCACCGCCACTGGCAATGGCAATGGCTCTTCTTGTTGCAGTTGCAGCAGCAGCAGCAGCATGATGACTGCCATTGAGAAGAAGGAGGTTGCCCATATGAAGCAACTGGATGCTGCCGCCATGGGTACTTGTGTCCTCAACAATGATCTTGCCACCATTGACCGCCTTGTTCGCCGTCTACACACGGCGGTGGAGGGAGACAAGCTTCTGATTCGCCTTGGATTGGAGAGGGGCTCTGTCACTGGAACTGCCACCGACAAGCATCCGATTCAGGAGGTGCTCAAACAGCTGAGCAAGAGCCACCCCAATTTCCTCCACCTCCTCAACGAACTTGAGGAGCATATATGCCTCTGCTTTAACACCGTCAACAGGGCCAGGTCGATGCTTCTCCAACACATGTCTAGTCTAGTCTACTCCTCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

438

Amino Acids

48.47

Weight (kDa)

6.33

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19250 AT3G19330 AT3G19330 AT3G19330 AT3G19330
fragaria_vesca	FvH4_6g54380 FvH4_6g54381
malus_domestica	MD09G1001900.v1.1 MD09G1002000.v1.1 MD17G1006100.v1.1 MD17G1006200.v1.1
prunus_persica	Prupe.3G314200_v2.0.a1 Prupe.3G314300_v2.0.a1
pyrus_communis	pycom111g00150 pycom17g00160
rosa_chinensis	RchiOBHm_Chr2g0176601 RchiOBHm_Chr2g0176611
rosa_laevigata	RLG00000022428
rosa_multiflora	Rmu_co8463679.1_g000001 Rmu_sc0001417.1_g000013 Rmu_sc0039568.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076270
rosa_rugosa	Rorug02G0596300
rosa_samantha	Rh2AG674400 Rh2BG685500 Rh2CG648700 Rh2CG648800 Rh2DG699600 Rh2DG699700
rosa_wichuraiana	Rw2G055320 Rw2G055330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	726, 735
AccI	GTMKAC	2 cut(s)	1066, 1299
AccII	CGCG	2 cut(s)	496, 759
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	3 cut(s)	164, 537, 1015
AfiI	CCNNNNNNNGG	3 cut(s)	250, 1111, 1257
AflIII	ACRYGT	1 cut(s)	1284
AjnI	CCWGG	1 cut(s)	1262
AleI	CACNNNNGTG	1 cut(s)	1076
AluBI	AGCT	8 cut(s)	56, 65, 126, 502, 697, 709, 1093, 1177
AluI	AGCT	8 cut(s)	56, 65, 126, 502, 697, 709, 1093, 1177
Alw21I	GWGCWC	3 cut(s)	128, 504, 1170
Alw26I	GTCTC	6 cut(s)	17, 319, 427, 558, 817, 1080
AlwNI	CAGNNNCTG	1 cut(s)	59
AoxI	GGCC	4 cut(s)	132, 591, 869, 1260
Asp700I	GAANNNNTTC	1 cut(s)	603
AspLEI	GCGC	4 cut(s)	385, 496, 511, 761
AspS9I	GGNCC	4 cut(s)	220, 591, 869, 1260
AsuHPI	GGTGA	3 cut(s)	42, 145, 403
AsuII	TTCGAA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	220
BaeI	ACNNNNGTAYC	2 cut(s)	1005, 1038
BanII	GRGCYC	3 cut(s)	128, 504, 1124
BauI	CACGAG	1 cut(s)	158
Bbv12I	GWGCWC	3 cut(s)	128, 504, 1170
BbvCI	CCTCAGC	1 cut(s)	569
BccI	CCATC	3 cut(s)	525, 785, 833
BceAI	ACGGC	5 cut(s)	158, 794, 803, 1047, 1089
BcgI	CGANNNNNNTGC	2 cut(s)	781, 815
BciT130I	CCWGG	1 cut(s)	1264
BcoDI	GTCTC	6 cut(s)	17, 319, 427, 558, 817, 1080
BfaI	CTAG	3 cut(s)	207, 1290, 1295
BfmI	CTRYAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	386
BlpI	GCTNAGC	1 cut(s)	1178
Bme1390I	CCNGG	1 cut(s)	1264
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	4 cut(s)	220, 591, 869, 1260
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	1264
BmrI	ACTGGG	2 cut(s)	178, 574
BmsI	GCATC	3 cut(s)	988, 1159, 1260
BmuI	ACTGGG	2 cut(s)	178, 574
BplI	GAGNNNNNCTC	2 cut(s)	1106, 1138
BpmI	CTGGAG	1 cut(s)	721
Bpu10I	CCTNAGC	1 cut(s)	569
Bpu1102I	GCTNAGC	1 cut(s)	1178
Bpu14I	TTCGAA	1 cut(s)	272
BpuEI	CTTGAG	2 cut(s)	683, 1241
BsaI	GGTCTC	1 cut(s)	427
BsaJI	CCNNGG	4 cut(s)	594, 799, 1008, 1105
BsaXI	ACNNNNNCTCC	7 cut(s)	536, 566, 641, 671, 795, 825, 1292
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 1111, 1257
Bse1I	ACTGG	5 cut(s)	184, 580, 904, 999, 1135
Bse3DI	GCAATG	3 cut(s)	14, 910, 916
BseBI	CCWGG	1 cut(s)	1264
BseDI	CCNNGG	4 cut(s)	594, 799, 1008, 1105
BseGI	GGATG	3 cut(s)	88, 1003, 1150
BseLI	CCNNNNNNNGG	3 cut(s)	250, 1111, 1257
BseMI	GCAATG	3 cut(s)	14, 910, 916
BseMII	CTCAG	4 cut(s)	120, 548, 583, 1169
BseNI	ACTGG	5 cut(s)	184, 580, 904, 999, 1135
BseRI	GAGGAG	8 cut(s)	515, 560, 563, 718, 1199, 1238, 1294, 1297
BseYI	CCCAGC	1 cut(s)	693
BsgI	GTGCAG	2 cut(s)	604, 868
Bsh1236I	CGCG	2 cut(s)	496, 759
Bsh1285I	CGRYCG	2 cut(s)	110, 619
BshFI	GGCC	4 cut(s)	134, 593, 871, 1262
BsiEI	CGRYCG	2 cut(s)	110, 619
BsiHKAI	GWGCWC	3 cut(s)	128, 504, 1170
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	3 cut(s)	250, 1111, 1257
BsmAI	GTCTC	6 cut(s)	17, 319, 427, 558, 817, 1080
BsmBI	CGTCTC	1 cut(s)	817
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	4 cut(s)	134, 593, 871, 1262
Bso31I	GGTCTC	1 cut(s)	427
Bsp119I	TTCGAA	1 cut(s)	272
Bsp1286I	GDGCHC	4 cut(s)	128, 504, 1124, 1170
Bsp1407I	TGTACA	1 cut(s)	535
Bsp143I	GATC	2 cut(s)	107, 1033
Bsp1720I	GCTNAGC	1 cut(s)	1178
Bsp19I	CCATGG	1 cut(s)	1008
BspANI	GGCC	4 cut(s)	134, 593, 871, 1262
BspCNI	CTCAG	4 cut(s)	121, 549, 582, 1170
BspFNI	CGCG	2 cut(s)	496, 759
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	922
BspT104I	TTCGAA	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	427
BsrBI	CCGCTC	2 cut(s)	726, 735
BsrDI	GCAATG	3 cut(s)	14, 910, 916
BsrGI	TGTACA	1 cut(s)	535
BsrI	ACTGG	5 cut(s)	184, 580, 904, 999, 1135
BssECI	CCNNGG	4 cut(s)	594, 799, 1008, 1105
BssMI	GATC	2 cut(s)	107, 1033
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	3 cut(s)	594, 1008, 1105
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	1264
Bst4CI	ACNGT	4 cut(s)	369, 540, 832, 1252
Bst6I	CTCTTC	2 cut(s)	372, 922
BstAUI	TGTACA	1 cut(s)	535
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	4 cut(s)	129, 557, 569, 1178
BstDSI	CCRYGG	1 cut(s)	1008
BstF5I	GGATG	3 cut(s)	88, 1003, 1150
BstFNI	CGCG	2 cut(s)	496, 759
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	4 cut(s)	385, 496, 511, 761
BstKTI	GATC	2 cut(s)	110, 1036
BstMAI	GTCTC	6 cut(s)	17, 319, 427, 558, 817, 1080
BstMBI	GATC	2 cut(s)	107, 1033
BstMCI	CGRYCG	2 cut(s)	110, 619
BstNI	CCWGG	1 cut(s)	1264
BstNSI	RCATGY	2 cut(s)	679, 1288
BstSCI	CCNGG	1 cut(s)	1262
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	2 cut(s)	496, 759
BsuRI	GGCC	4 cut(s)	134, 593, 871, 1262
BtgI	CCRYGG	1 cut(s)	1008
BtsCI	GGATG	3 cut(s)	88, 1003, 1150
BtsI	GCAGTG	2 cut(s)	792, 843
BtsIMutI	CAGTG	7 cut(s)	374, 587, 792, 828, 843, 897, 1128
Cac8I	GCNNGC	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	59
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	4 cut(s)	385, 496, 511, 761
Cfr13I	GGNCC	4 cut(s)	220, 591, 869, 1260
Csp6I	GTAC	3 cut(s)	163, 536, 1014
CviQI	GTAC	3 cut(s)	163, 536, 1014
DdeI	CTNAG	4 cut(s)	129, 557, 569, 1178
DpnI	GATC	2 cut(s)	109, 1035
DpnII	GATC	2 cut(s)	107, 1033
Eam1104I	CTCTTC	2 cut(s)	372, 922
EarI	CTCTTC	2 cut(s)	372, 922
EciI	GGCGGA	1 cut(s)	133
Ecl136II	GAGCTC	2 cut(s)	126, 502
Eco130I	CCWWGG	3 cut(s)	594, 1008, 1105
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	3 cut(s)	128, 504, 1124
Eco31I	GGTCTC	1 cut(s)	427
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	2 cut(s)	126, 502
Eco57I	CTGAAG	1 cut(s)	338
EcoICRI	GAGCTC	2 cut(s)	126, 502
EcoRII	CCWGG	1 cut(s)	1262
EcoRV	GATATC	1 cut(s)	79
EcoT14I	CCWWGG	3 cut(s)	594, 1008, 1105
EcoT38I	GRGCYC	3 cut(s)	128, 504, 1124
ErhI	CCWWGG	3 cut(s)	594, 1008, 1105
Esp3I	CGTCTC	1 cut(s)	817
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	1 cut(s)	275
FauI	CCCGC	2 cut(s)	725, 740
FauNDI	CATATG	1 cut(s)	984
FblI	GTMKAC	2 cut(s)	1066, 1299
FokI	GGATG	3 cut(s)	75, 1010, 1137
FriOI	GRGCYC	3 cut(s)	128, 504, 1124
FspBI	CTAG	3 cut(s)	207, 1290, 1295
GlaI	GCGC	4 cut(s)	384, 495, 510, 760
GsaI	CCCAGC	1 cut(s)	697
GsuI	CTGGAG	1 cut(s)	721
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	4 cut(s)	134, 593, 871, 1262
HhaI	GCGC	4 cut(s)	385, 496, 511, 761
Hin6I	GCGC	4 cut(s)	383, 494, 509, 759
HinP1I	GCGC	4 cut(s)	383, 494, 509, 759
HincII	GTYRAC	2 cut(s)	36, 1255
HindII	GTYRAC	2 cut(s)	36, 1255
HindIII	AAGCTT	1 cut(s)	1091
HphI	GGTGA	3 cut(s)	42, 145, 403
Hpy166II	GTNNAC	4 cut(s)	36, 1067, 1255, 1300
Hpy188III	TCNNGA	5 cut(s)	74, 215, 738, 1160, 1311
Hpy8I	GTNNAC	4 cut(s)	36, 1067, 1255, 1300
Hpy99I	CGWCG	5 cut(s)	34, 533, 674, 824, 860
HpyAV	CCTTC	4 cut(s)	643, 648, 761, 964
HpyCH4III	ACNGT	4 cut(s)	369, 540, 832, 1252
HpyCH4IV	ACGT	2 cut(s)	483, 531
HpyCH4V	TGCA	7 cut(s)	7, 62, 585, 866, 885, 927, 933
HpyF3I	CTNAG	4 cut(s)	129, 557, 569, 1178
HpySE526I	ACGT	2 cut(s)	483, 531
HspAI	GCGC	4 cut(s)	383, 494, 509, 759
Kzo9I	GATC	2 cut(s)	107, 1033
LguI	GCTCTTC	1 cut(s)	922
LmnI	GCTCC	7 cut(s)	76, 343, 477, 684, 731, 740, 1225
LweI	GCATC	3 cut(s)	988, 1159, 1260
MaeI	CTAG	3 cut(s)	207, 1290, 1295
MaeII	ACGT	2 cut(s)	483, 531
MaeIII	GTNAC	1 cut(s)	1126
MalI	GATC	2 cut(s)	109, 1035
MbiI	CCGCTC	2 cut(s)	726, 735
MboI	GATC	2 cut(s)	107, 1033
MboII	GAAGA	3 cut(s)	389, 909, 979
MhlI	GDGCHC	4 cut(s)	128, 504, 1124, 1170
MluCI	AATT	3 cut(s)	611, 664, 1195
MlyI	GAGTC	8 cut(s)	275, 281, 560, 644, 650, 707, 741, 813
MmeI	TCCRAC	4 cut(s)	522, 678, 769, 1303
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	1 cut(s)	1245
MslI	CAYNNNNRTG	3 cut(s)	243, 246, 1076
MspA1I	CMGCKG	5 cut(s)	56, 65, 331, 684, 1177
MspR9I	CCNGG	1 cut(s)	1264
MvaI	CCWGG	1 cut(s)	1264
MvnI	CGCG	2 cut(s)	496, 759
NcoI	CCATGG	1 cut(s)	1008
NdeI	CATATG	1 cut(s)	984
NdeII	GATC	2 cut(s)	107, 1033
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	1126
NspI	RCATGY	2 cut(s)	679, 1288
NspV	TTCGAA	1 cut(s)	272
OliI	CACNNNNGTG	1 cut(s)	1076
PagI	TCATGA	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	134
PciI	ACATGT	1 cut(s)	1284
PciSI	GCTCTTC	1 cut(s)	922
PcsI	WCGNNNNNNNCGW	3 cut(s)	441, 621, 807
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	5 cut(s)	211, 269, 741, 1099, 1156
Ple19I	CGATCG	1 cut(s)	110
PleI	GAGTC	8 cut(s)	275, 281, 559, 644, 650, 707, 741, 812
PpsI	GAGTC	8 cut(s)	275, 281, 559, 644, 650, 707, 741, 812
PscI	ACATGT	1 cut(s)	1284
Psp124BI	GAGCTC	2 cut(s)	128, 504
Psp6I	CCWGG	1 cut(s)	1262
PspFI	CCCAGC	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	1262
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	4 cut(s)	220, 591, 869, 1260
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	59
PvuI	CGATCG	1 cut(s)	110
PvuII	CAGCTG	3 cut(s)	56, 65, 1177
RsaI	GTAC	3 cut(s)	164, 537, 1015
RsaNI	GTAC	3 cut(s)	163, 536, 1014
RseI	CAYNNNNRTG	3 cut(s)	243, 246, 1076
SacI	GAGCTC	2 cut(s)	128, 504
SapI	GCTCTTC	1 cut(s)	922
SaqAI	TTAA	1 cut(s)	1245
Sau3AI	GATC	2 cut(s)	107, 1033
Sau96I	GGNCC	4 cut(s)	220, 591, 869, 1260
SchI	GAGTC	8 cut(s)	275, 281, 560, 644, 650, 707, 741, 813
ScrFI	CCNGG	1 cut(s)	1264
SduI	GDGCHC	4 cut(s)	128, 504, 1124, 1170
SfaNI	GCATC	3 cut(s)	988, 1159, 1260
SfcI	CTRYAG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	272
SinI	GGWCC	1 cut(s)	220
SmiMI	CAYNNNNRTG	3 cut(s)	243, 246, 1076
SmlI	CTYRAG	2 cut(s)	698, 1220
SmoI	CTYRAG	2 cut(s)	698, 1220
Sse9I	AATT	3 cut(s)	611, 664, 1195
SseBI	AGGCCT	1 cut(s)	134
SspMI	CTAG	3 cut(s)	207, 1290, 1295
SstI	GAGCTC	2 cut(s)	128, 504
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	1262
StyI	CCWWGG	3 cut(s)	594, 1008, 1105
TaaI	ACNGT	4 cut(s)	369, 540, 832, 1252
TaiI	ACGT	2 cut(s)	486, 534
TaqI	TCGA	8 cut(s)	272, 435, 490, 528, 615, 669, 711, 1268
TasI	AATT	3 cut(s)	611, 664, 1195
TatI	WGTACW	2 cut(s)	162, 535
TauI	GCSGC	6 cut(s)	71, 334, 759, 851, 874, 1007
TfiI	GAWTC	5 cut(s)	211, 269, 741, 1099, 1156
Tru1I	TTAA	1 cut(s)	1245
Tru9I	TTAA	1 cut(s)	1245
TscAI	CASTG	7 cut(s)	374, 587, 799, 835, 850, 904, 1135
TseFI	GTSAC	1 cut(s)	1126
Tsp45I	GTSAC	1 cut(s)	1126
TspDTI	ATGAA	3 cut(s)	203, 775, 1001
TspRI	CASTG	7 cut(s)	374, 587, 799, 835, 850, 904, 1135
VpaK11BI	GGWCC	1 cut(s)	220
XceI	RCATGY	2 cut(s)	679, 1288
XmiI	GTMKAC	2 cut(s)	1066, 1299
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	3 cut(s)	207, 1290, 1295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.