Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004578

Physical Location & Seq

Genomic Coordinates Reverse (-)

81727474 .. 81731763

Gene Structure 4290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG648800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCAGCGTCTCTTGCAGCAATACTTGGAGGTGCTGCAGGAGCCGTGGCATTGGTGGGGATAATTATCATACTTATCGGGTTCTGTCTTTGCAATAGGAGTGTTTCGAGAACTTCTGAGACAGGTTCTTCTGATCCATCTGTTCAAGTGGGAAGACATGGTGGGGTTGAGTTGTCAATACGAGAAACAAGGCGTTTTCAGATGGAAGAATTGTCTCTGGCCACAAAAAATTTTAGTGATACAAATTTGATTGGGGTAGGAAAATTTGGGGAGGTGTATATGGGTTTTCTTCATGACGGTATGCTTGTAGCCATCAAAAAGCGATCTGGATTACCTAGTCAGGAGTTTATTAATGAGGTAAACTATCTCTCAGCTATTCAGCATCGGAATATTGTTACTCTGTTGGGCTACTGCCAGGAAAATAATCTGCAGTTTCTTGTGTATGAGTATATTCATAGTGGAAGTGTTTCGAGTCACTTATATGGCACTGGTCAGCATGTTCGTGAAAAGCTAGAATTCAAGAATCGACTATCAATAGCTCTAGGGGCAGCTAAAGGCTTGGCTTACCTTCACTCTTTGAGTCCTCGTCTGGTGCATAAGGACTTTAAAACAGCCAATGTTCTTGTAGATGAAAATTTCATTGCCAAGGTTGCAGATGCAGGAATTCGCAATTTCTTGGGAAAAGATATGGCAGGCCCATCTTCTCAAGTGATTACTGATGAGATATTCCTTTCTCCAGAGGTAAGAGAATTTAGACGATTTTCTGAAAAAAGTGATGTATATAGCTTTGGGGTCTTCCTTATGGAGTTGTTAAGCGGCAGAGAAGCAGCAAAATTGACATCTTCTGACTCGAATCAGAACATTTTTGAATGGGTGCAAAATATCCAAGATGACGGCAATATTTCGAGCATCATCGATGAGAGATTGGGGAATAGCTTCACAGCTGAAGCTATGGAAAAGTTGATACAGTTGATAATAAGATGTGTAGAAGCTTCGAGTGAAAGGCGACCAGCGATGAGCTATGTGGTAATGGAACTAGAGGGGATACTTGAGAAAGAGATGAGCTTGACAACAATCATGGGGGAAGGAACCTCGACTGTGATCCCAGGAAGTCAGTTATTCAGAGCAACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

378

Amino Acids

41.55

Weight (kDa)

5.83

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	80 - 342	1e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	82 - 346	1.3e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19250 AT3G19330 AT3G19330 AT3G19330 AT3G19330
fragaria_vesca	FvH4_6g54380 FvH4_6g54381
malus_domestica	MD09G1001900.v1.1 MD09G1002000.v1.1 MD17G1006100.v1.1 MD17G1006200.v1.1
prunus_persica	Prupe.3G314200_v2.0.a1 Prupe.3G314300_v2.0.a1
pyrus_communis	pycom111g00150 pycom17g00160
rosa_chinensis	RchiOBHm_Chr2g0176601 RchiOBHm_Chr2g0176611
rosa_laevigata	RLG00000022428
rosa_multiflora	Rmu_co8463679.1_g000001 Rmu_sc0001417.1_g000013 Rmu_sc0039568.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076270
rosa_rugosa	Rorug02G0596300
rosa_samantha	Rh2AG674400 Rh2BG685500 Rh2CG648700 Rh2CG648800 Rh2DG699600 Rh2DG699700
rosa_wichuraiana	Rw2G055320 Rw2G055330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	816
AclWI	GGATC	2 cut(s)	128, 1096
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	7 cut(s)	229, 244, 263, 515, 634, 663, 749
AcuI	CTGAAG	1 cut(s)	966
AgsI	TTSAA	3 cut(s)	146, 520, 869
AjnI	CCWGG	2 cut(s)	414, 1105
Alw26I	GTCTC	3 cut(s)	15, 113, 219
AlwI	GGATC	2 cut(s)	128, 1096
AoxI	GGCC	2 cut(s)	219, 694
ApeKI	GCWGC	4 cut(s)	17, 35, 548, 827
ApoI	RAATTY	7 cut(s)	229, 244, 263, 515, 634, 663, 749
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	2 cut(s)	466, 935
AspS9I	GGNCC	1 cut(s)	695
BalI	TGGCCA	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	160, 787
BbvI	GCAGC	4 cut(s)	22, 29, 560, 839
BccI	CCATC	4 cut(s)	145, 196, 320, 706
BceAI	ACGGC	2 cut(s)	29, 910
BciT130I	CCWGG	2 cut(s)	416, 1107
BciVI	GTATCC	1 cut(s)	1038
BcoDI	GTCTC	3 cut(s)	15, 113, 219
BfaI	CTAG	4 cut(s)	336, 512, 542, 1037
BfmI	CTRYAG	2 cut(s)	36, 428
BfuI	GTATCC	1 cut(s)	1038
BisI	GCNGC	5 cut(s)	18, 36, 549, 817, 828
BlsI	GCNGC	5 cut(s)	19, 37, 550, 818, 829
Bme1390I	CCNGG	2 cut(s)	416, 1107
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	2 cut(s)	43, 1090
BmrFI	CCNGG	2 cut(s)	416, 1107
BmsI	GCATC	3 cut(s)	391, 646, 918
BpiI	GAAGAC	2 cut(s)	160, 787
BpmI	CTGGAG	1 cut(s)	720
BpuEI	CTTGAG	2 cut(s)	690, 1070
Bsa29I	ATCGAT	1 cut(s)	915
BsaBI	GATNNNNATC	1 cut(s)	65
BsaJI	CCNNGG	3 cut(s)	45, 645, 1105
Bse1I	ACTGG	1 cut(s)	493
Bse3DI	GCAATG	1 cut(s)	639
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	416, 1107
BseCI	ATCGAT	1 cut(s)	915
BseDI	CCNNGG	3 cut(s)	45, 645, 1105
BseJI	GATNNNNATC	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	108, 384
BseNI	ACTGG	1 cut(s)	493
BseXI	GCAGC	4 cut(s)	22, 29, 560, 839
BshFI	GGCC	2 cut(s)	221, 696
BshVI	ATCGAT	1 cut(s)	915
BsmAI	GTCTC	3 cut(s)	15, 113, 219
BsmBI	CGTCTC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	221, 696
Bsp143I	GATC	3 cut(s)	133, 323, 1101
BspACI	CCGC	1 cut(s)	816
BspANI	GGCC	2 cut(s)	221, 696
BspCNI	CTCAG	2 cut(s)	109, 383
BspDI	ATCGAT	1 cut(s)	915
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	43, 1090
BspMAI	CTGCAG	2 cut(s)	40, 432
BspPI	GGATC	2 cut(s)	128, 1096
BsrDI	GCAATG	1 cut(s)	639
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	3 cut(s)	45, 645, 1105
BssMI	GATC	3 cut(s)	133, 323, 1101
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	2 cut(s)	416, 1107
Bst4CI	ACNGT	3 cut(s)	299, 969, 1099
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	2 cut(s)	117, 370
BstDSI	CCRYGG	1 cut(s)	45
BstKTI	GATC	3 cut(s)	136, 326, 1104
BstMAI	GTCTC	3 cut(s)	15, 113, 219
BstMBI	GATC	3 cut(s)	133, 323, 1101
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 41, 545, 650
BstNI	CCWGG	2 cut(s)	416, 1107
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	2 cut(s)	414, 1105
BstSFI	CTRYAG	2 cut(s)	36, 428
BstV1I	GCAGC	4 cut(s)	22, 29, 560, 839
BstV2I	GAAGAC	2 cut(s)	160, 787
Bsu15I	ATCGAT	1 cut(s)	915
BsuI	GTATCC	1 cut(s)	1038
BsuRI	GGCC	2 cut(s)	221, 696
BsuTUI	ATCGAT	1 cut(s)	915
BtgI	CCRYGG	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	1028
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	694
CciI	TCATGA	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	695
ClaI	ATCGAT	1 cut(s)	915
CviAII	CATG	4 cut(s)	158, 293, 497, 1078
DdeI	CTNAG	2 cut(s)	117, 370
DpnI	GATC	3 cut(s)	135, 325, 1103
DpnII	GATC	3 cut(s)	133, 323, 1101
DraI	TTTAAA	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	966
EcoRI	GAATTC	2 cut(s)	515, 663
EcoRII	CCWGG	2 cut(s)	414, 1105
EcoT14I	CCWWGG	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	4 cut(s)	161, 296, 500, 1081
FatI	CATG	4 cut(s)	157, 292, 496, 1077
Fnu4HI	GCNGC	5 cut(s)	18, 36, 549, 817, 828
Fsp4HI	GCNGC	5 cut(s)	18, 36, 549, 817, 828
FspBI	CTAG	4 cut(s)	336, 512, 542, 1037
GluI	GCNGC	5 cut(s)	18, 36, 549, 817, 828
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	2 cut(s)	221, 696
Hin1II	CATG	4 cut(s)	161, 296, 500, 1081
HindIII	AAGCTT	1 cut(s)	990
HinfI	GANTC	5 cut(s)	472, 523, 580, 848, 853
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	8 cut(s)	118, 133, 201, 387, 766, 847, 858, 1124
Hpy188III	TCNNGA	7 cut(s)	108, 293, 327, 341, 503, 520, 737
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	578, 1079
HpyCH4III	ACNGT	3 cut(s)	299, 969, 1099
HpyCH4V	TGCA	8 cut(s)	17, 38, 93, 430, 595, 653, 659, 877
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 41, 545, 650
HpyF3I	CTNAG	2 cut(s)	117, 370
Hsp92II	CATG	4 cut(s)	161, 296, 500, 1081
Kzo9I	GATC	3 cut(s)	133, 323, 1101
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	4 cut(s)	22, 29, 560, 839
LweI	GCATC	3 cut(s)	391, 646, 918
MaeI	CTAG	4 cut(s)	336, 512, 542, 1037
MaeIII	GTNAC	2 cut(s)	394, 473
MalI	GATC	3 cut(s)	135, 325, 1103
MboI	GATC	3 cut(s)	133, 323, 1101
MboII	GAAGA	7 cut(s)	120, 165, 218, 281, 693, 787, 834
MlsI	TGGCCA	1 cut(s)	221
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	3 cut(s)	481, 589, 842
MnlI	CCTC	7 cut(s)	23, 265, 349, 594, 733, 1033, 1102
Mox20I	TGGCCA	1 cut(s)	221
MroXI	GAANNNNTTC	2 cut(s)	466, 935
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	3 cut(s)	351, 606, 812
MslI	CAYNNNNRTG	2 cut(s)	480, 501
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	944
MspR9I	CCNGG	2 cut(s)	416, 1107
MvaI	CCWGG	2 cut(s)	416, 1107
MwoI	GCNNNNNNNGC	4 cut(s)	14, 41, 545, 650
NdeII	GATC	3 cut(s)	133, 323, 1101
NlaIII	CATG	4 cut(s)	161, 296, 500, 1081
NlaIV	GGNNCC	2 cut(s)	43, 1090
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	500
PagI	TCATGA	1 cut(s)	292
PdmI	GAANNNNTTC	2 cut(s)	466, 935
PfeI	GAWTC	2 cut(s)	523, 853
PkrI	GCNGC	5 cut(s)	19, 37, 550, 818, 829
PleI	GAGTC	3 cut(s)	480, 588, 842
PpsI	GAGTC	3 cut(s)	480, 588, 842
PshBI	ATTAAT	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	414, 1105
PspGI	CCWGG	2 cut(s)	414, 1105
PspN4I	GGNNCC	2 cut(s)	43, 1090
PspPI	GGNCC	1 cut(s)	695
PstI	CTGCAG	2 cut(s)	40, 432
PvuII	CAGCTG	1 cut(s)	944
RseI	CAYNNNNRTG	2 cut(s)	480, 501
SaqAI	TTAA	3 cut(s)	351, 606, 812
SatI	GCNGC	5 cut(s)	18, 36, 549, 817, 828
Sau3AI	GATC	3 cut(s)	133, 323, 1101
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	3 cut(s)	481, 589, 842
ScrFI	CCNGG	2 cut(s)	416, 1107
SfaNI	GCATC	3 cut(s)	391, 646, 918
SfcI	CTRYAG	2 cut(s)	36, 428
SmiMI	CAYNNNNRTG	2 cut(s)	480, 501
SmlI	CTYRAG	2 cut(s)	705, 1049
SmoI	CTYRAG	2 cut(s)	705, 1049
SsiI	CCGC	1 cut(s)	816
SspI	AATATT	2 cut(s)	391, 901
SspMI	CTAG	4 cut(s)	336, 512, 542, 1037
StyD4I	CCNGG	2 cut(s)	414, 1105
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	3 cut(s)	299, 969, 1099
TaqI	TCGA	8 cut(s)	107, 470, 526, 851, 905, 915, 995, 1094
TauI	GCSGC	1 cut(s)	819
TfiI	GAWTC	2 cut(s)	523, 853
Tru1I	TTAA	3 cut(s)	351, 606, 812
Tru9I	TTAA	3 cut(s)	351, 606, 812
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	4 cut(s)	17, 35, 548, 827
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	4 cut(s)	281, 443, 628, 645
TspRI	CASTG	1 cut(s)	493
VspI	ATTAAT	1 cut(s)	351
XapI	RAATTY	7 cut(s)	229, 244, 263, 515, 634, 663, 749
XceI	RCATGY	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	466, 935
XspI	CTAG	4 cut(s)	336, 512, 542, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.