Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004578

Physical Location & Seq

Genomic Coordinates Forward (+)

429541 .. 431378

Gene Structure 1838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1006200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAGTATTGGTCCCTCAAATTCTTTGGTCAGCAACTGTAAGACTTTCACTTGTTTCAAAGATCCAGCTTCTTTTTGTTTGGCTCATCTTCACTCTCTGAGTCCCCGTCTGGTGCACAAGGATTTTAAGACAGCCAATGTTCTCGTAGATGAAAACTTCATAGCTAAGGTTGCAGATGCAGGAATTCGCAATTTCCTGGGAAGAGTTGATATTGCAGGCTCGTCTTCTCAAGTGACTGCTGATGAGATGTTCCTTGCTCCAGAGGTCAGAGAGTTCGGACGATTTTCAGAAAAAAGTGACGTATATAGTTTTGGTGTCTTCCTTCTGGAGTTAGTGAGTGGGCGAGAGGCTAGAGATTTTGCATCTTCTGACTCAACCCAGAACATGGTTGAATGGGTGCAAAATATTCAAGAGGGCAGCAATGTATCGTGCATCATCGATGAGAGGTTGGGGAATAGCTTCACAGGAGAAGCTATGGAAGGGTTGATACAGTTGATCATGCGATGTGTGGAGGCTTCAAGTGAGAGGCGACCGGGCATGAGCCATGTGGTAATGGAGCTGGACCGGATAGTTGAGAAAGAGATGAGCTTGACAACAATCATGGGGGAAGGAACCTCTACGGTGATCCCGGGAAGTCAGTTATTTAAAGCAACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

220

Amino Acids

24.06

Weight (kDa)

5.07

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	27 - 187	1.9e-20	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	27 - 184	2.5e-16	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19250 AT3G19330 AT3G19330 AT3G19330 AT3G19330
fragaria_vesca	FvH4_6g54380 FvH4_6g54381
malus_domestica	MD09G1001900.v1.1 MD09G1002000.v1.1 MD17G1006100.v1.1 MD17G1006200.v1.1
prunus_persica	Prupe.3G314200_v2.0.a1 Prupe.3G314300_v2.0.a1
pyrus_communis	pycom111g00150 pycom17g00160
rosa_chinensis	RchiOBHm_Chr2g0176601 RchiOBHm_Chr2g0176611
rosa_laevigata	RLG00000022428
rosa_multiflora	Rmu_co8463679.1_g000001 Rmu_sc0001417.1_g000013 Rmu_sc0039568.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076270
rosa_rugosa	Rorug02G0596300
rosa_samantha	Rh2AG674400 Rh2BG685500 Rh2CG648700 Rh2CG648800 Rh2DG699600 Rh2DG699700
rosa_wichuraiana	Rw2G055320 Rw2G055330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	385
AclWI	GGATC	2 cut(s)	56, 619
AcsI	RAATTY	2 cut(s)	19, 183
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	4 cut(s)	58, 392, 410, 519
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	6 cut(s)	68, 164, 459, 473, 559, 588
AluI	AGCT	6 cut(s)	68, 164, 459, 473, 559, 588
Alw21I	GWGCWC	1 cut(s)	117
Alw44I	GTGCAC	1 cut(s)	113
AlwI	GGATC	2 cut(s)	56, 619
AlwNI	CAGNNNCTG	1 cut(s)	36
Ama87I	CYCGRG	1 cut(s)	628
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	2 cut(s)	19, 183
Asp700I	GAANNNNTTC	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	11, 562
AsuC2I	CCSGG	3 cut(s)	534, 629, 630
AsuHPI	GGTGA	1 cut(s)	634
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	2 cut(s)	11, 562
BaeGI	GKGCMC	1 cut(s)	117
BarI	GAAGNNNNNNTAC	2 cut(s)	471, 503
BbsI	GAAGAC	2 cut(s)	216, 310
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	197
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	3 cut(s)	534, 629, 630
BfaI	CTAG	1 cut(s)	351
BisI	GCNGC	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	419
Bme1390I	CCNGG	4 cut(s)	197, 534, 629, 630
Bme18I	GGWCC	2 cut(s)	11, 562
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	11, 562
BmiI	GGNNCC	2 cut(s)	13, 613
BmrFI	CCNGG	4 cut(s)	197, 534, 629, 630
BmsI	GCATC	3 cut(s)	166, 371, 441
BpiI	GAAGAC	2 cut(s)	216, 310
BpmI	CTGGAG	2 cut(s)	243, 347
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	213
BpuMI	CCSGG	3 cut(s)	534, 629, 630
Bsa29I	ATCGAT	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	196, 628
BsaWI	WCCGGW	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	196, 628
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	533
BshVI	ATCGAT	1 cut(s)	438
BsiEI	CGRYCG	1 cut(s)	533
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	3 cut(s)	533, 565, 629
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	61, 495, 624
BspCNI	CTCAG	1 cut(s)	90
BspDI	ATCGAT	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	13, 613
BspPI	GGATC	2 cut(s)	56, 619
BsrDI	GCAATG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	196, 628
BssMI	GATC	3 cut(s)	61, 495, 624
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	3 cut(s)	38, 492, 622
Bst6I	CTCTTC	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	2 cut(s)	98, 165
BstKTI	GATC	3 cut(s)	64, 498, 627
BstMBI	GATC	3 cut(s)	61, 495, 624
BstMCI	CGRYCG	1 cut(s)	533
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	4 cut(s)	195, 532, 627, 628
BstSLI	GKGCMC	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	429
BstV2I	GAAGAC	2 cut(s)	216, 310
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	438
BsuTUI	ATCGAT	1 cut(s)	438
BtgZI	GCGATG	1 cut(s)	517
Cac8I	GCNNGC	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	11, 562
Cfr9I	CCCGGG	1 cut(s)	628
ClaI	ATCGAT	1 cut(s)	438
CviAII	CATG	5 cut(s)	385, 499, 538, 545, 601
DdeI	CTNAG	2 cut(s)	98, 165
DpnI	GATC	3 cut(s)	63, 497, 626
DpnII	GATC	3 cut(s)	61, 495, 624
DraI	TTTAAA	1 cut(s)	646
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	11, 562
Eco88I	CYCGRG	1 cut(s)	628
EcoRI	GAATTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	195
FaeI	CATG	5 cut(s)	388, 502, 541, 548, 604
FaiI	YATR	9 cut(s)	161, 304, 306, 386, 476, 500, 539, 546, 602
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	5 cut(s)	384, 498, 537, 544, 600
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	1 cut(s)	418
Fsp4HI	GCNGC	1 cut(s)	418
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	1 cut(s)	418
GsuI	CTGGAG	2 cut(s)	243, 347
HapII	CCGG	3 cut(s)	533, 565, 629
Hin1II	CATG	5 cut(s)	388, 502, 541, 548, 604
HinfI	GANTC	2 cut(s)	100, 371
HpaII	CCGG	3 cut(s)	533, 565, 629
HphI	GGTGA	1 cut(s)	634
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	5 cut(s)	99, 269, 278, 289, 370
Hpy188III	TCNNGA	3 cut(s)	260, 326, 410
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	3 cut(s)	332, 473, 602
HpyCH4III	ACNGT	3 cut(s)	38, 492, 622
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	7 cut(s)	115, 173, 179, 215, 362, 400, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	98, 165
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	5 cut(s)	388, 502, 541, 548, 604
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	3 cut(s)	61, 495, 624
LmnI	GCTCC	2 cut(s)	262, 556
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	3 cut(s)	166, 371, 441
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	232, 296
MalI	GATC	3 cut(s)	63, 497, 626
MboI	GATC	3 cut(s)	61, 495, 624
MboII	GAAGA	5 cut(s)	80, 213, 216, 310, 357
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	3 cut(s)	19, 183, 190
MlyI	GAGTC	2 cut(s)	109, 365
MnlI	CCTC	8 cut(s)	25, 256, 340, 406, 438, 505, 519, 625
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	2 cut(s)	126, 645
MspI	CCGG	3 cut(s)	533, 565, 629
MspR9I	CCNGG	4 cut(s)	197, 534, 629, 630
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	3 cut(s)	534, 629, 630
NdeII	GATC	3 cut(s)	61, 495, 624
NlaIII	CATG	5 cut(s)	388, 502, 541, 548, 604
NlaIV	GGNNCC	2 cut(s)	13, 613
NmuCI	GTSAC	2 cut(s)	232, 296
PdmI	GAANNNNTTC	1 cut(s)	458
PflMI	CCANNNNNTGG	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	419
PleI	GAGTC	2 cut(s)	108, 365
PpsI	GAGTC	2 cut(s)	108, 365
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	13, 613
PspPI	GGNCC	2 cut(s)	11, 562
PstNI	CAGNNNCTG	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	126, 645
SatI	GCNGC	1 cut(s)	418
Sau3AI	GATC	3 cut(s)	61, 495, 624
Sau96I	GGNCC	2 cut(s)	11, 562
SchI	GAGTC	2 cut(s)	109, 365
ScrFI	CCNGG	4 cut(s)	197, 534, 629, 630
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	3 cut(s)	166, 371, 441
SinI	GGWCC	2 cut(s)	11, 562
SmaI	CCCGGG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	3 cut(s)	19, 183, 190
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	4 cut(s)	195, 532, 627, 628
TaaI	ACNGT	3 cut(s)	38, 492, 622
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	438
TasI	AATT	3 cut(s)	19, 183, 190
Tru1I	TTAA	2 cut(s)	126, 645
Tru9I	TTAA	2 cut(s)	126, 645
TseFI	GTSAC	2 cut(s)	232, 296
TseI	GCWGC	1 cut(s)	417
Tsp45I	GTSAC	2 cut(s)	232, 296
TspDTI	ATGAA	2 cut(s)	148, 165
TspMI	CCCGGG	1 cut(s)	628
Van91I	CCANNNNNTGG	1 cut(s)	385
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	11, 562
XapI	RAATTY	2 cut(s)	19, 183
XmaI	CCCGGG	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.