Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004578

Physical Location & Seq

Genomic Coordinates Reverse (-)

39718927 .. 39721582

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54381.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCAGCGCCTCTTGCAGCAATACTTGGAGGTGCTGCAGGAGCCGTGGCATTGGTGGGGATAATTATCATACTTGTTGGGTTCTGTCTTCGCAATAGGAGCGTTTCGAGAACTTCTGAGACAGGTTCTTCTGATCCATCTGTTCAAGTTGGAACACATGGTGGGGTTGAGTTGTCAATTCGAGAAACAAGGCGTTTTCAGATGGAAGAATTGTCTCTGGCCACAAAAAATTTTAGTGATAAAAATTTGATTGGGGAAGGAAAATTTGGGGAGGTGTATATGGGTTTTCTTCATGACGGAATGCTTGTAGCCATCAAAAAGCGACCTGGATTGCCTAGTCAGGAGTTTACCAATGAGGTAAACTATCTGTCAGCTATTCAGCACAGGAATATTGTTTCTCTCTTGGGCTACTGCCAGGAAAATAATCTGCAGTTTCTTGTGTATGAGTATATTCATAGTGGAAGTGTTTCCAGTCACTTATATGGCACTGGTCAGCATGTTCGTGAAAAGCTAGAATTCAAGAATCGACTATCAATAGCTCTAGGGGCAGCTAAAGGCTTGGCTTACCTTCACTCTTTAAGTCCTCGTCTGGTGCATAAGAACTTTAGAACAGCCAATGTTCTTGTGGATGAAAATTTTATTGCTAAGGTTGCAGATGCAGGAATTCGCAATTTCTTGGGAAAAGATATGGCAGGCCCATCTTCTCAAGTTATTGCTGATGAGATATTCCTCTCTCCAGAGGTAAGAGAATTTAGAAGATTTTCTGAAAAAAGTGATGTATATAGCTTTGGAATATTCCTTTTGGAGTTGGTAAGTGGCAGAGAAGCAGCAAAATTGACATCTGCTGACACGAATCAGGACATTGTTGAATGGGTGCAAAATATCCAAGACGTTGGCAATATTTCCAGCATCATCGATGACAGATTAGGGAATATCTTCACAGCTGAAGCTATGGAAAAGTTGATTCAGTTGATAATAAGATGTGTAGAAGGTTCAAGTGAGAGGCGACCAACAATGAGCCATGTGGTAACGGAACTAGAAGGAATACTTGAGAAAGAGATGAGCTTGACAACAATCATGGGGGAAGGAACCTCGACTGTGATCCCAGGAAGTCAGTTATTCAGAGCAACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

379

Amino Acids

41.47

Weight (kDa)

6.04

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	79 - 344	1.2e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	82 - 346	8.7e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19250 AT3G19330 AT3G19330 AT3G19330 AT3G19330
fragaria_vesca	FvH4_6g54380 FvH4_6g54381
malus_domestica	MD09G1001900.v1.1 MD09G1002000.v1.1 MD17G1006100.v1.1 MD17G1006200.v1.1
prunus_persica	Prupe.3G314200_v2.0.a1 Prupe.3G314300_v2.0.a1
pyrus_communis	pycom111g00150 pycom17g00160
rosa_chinensis	RchiOBHm_Chr2g0176601 RchiOBHm_Chr2g0176611
rosa_laevigata	RLG00000022428
rosa_multiflora	Rmu_co8463679.1_g000001 Rmu_sc0001417.1_g000013 Rmu_sc0039568.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076270
rosa_rugosa	Rorug02G0596300
rosa_samantha	Rh2AG674400 Rh2BG685500 Rh2CG648700 Rh2CG648800 Rh2DG699600 Rh2DG699700
rosa_wichuraiana	Rw2G055320 Rw2G055330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	128, 1096
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	7 cut(s)	229, 244, 263, 515, 634, 663, 749
AcuI	CTGAAG	1 cut(s)	966
AdeI	CACNNNGTG	1 cut(s)	161
AgsI	TTSAA	4 cut(s)	146, 520, 869, 996
AjnI	CCWGG	3 cut(s)	325, 414, 1105
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	8 cut(s)	374, 511, 539, 551, 786, 944, 950, 1065
AluI	AGCT	8 cut(s)	374, 511, 539, 551, 786, 944, 950, 1065
Alw26I	GTCTC	2 cut(s)	113, 219
AlwI	GGATC	2 cut(s)	128, 1096
AoxI	GGCC	2 cut(s)	219, 694
ApeKI	GCWGC	4 cut(s)	17, 35, 548, 827
ApoI	RAATTY	7 cut(s)	229, 244, 263, 515, 634, 663, 749
Asp700I	GAANNNNTTC	3 cut(s)	466, 760, 935
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	695
BalI	TGGCCA	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	4 cut(s)	22, 29, 560, 839
BccI	CCATC	4 cut(s)	145, 196, 320, 706
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	3 cut(s)	327, 416, 1107
BcoDI	GTCTC	2 cut(s)	113, 219
BfaI	CTAG	4 cut(s)	336, 512, 542, 1037
BfmI	CTRYAG	2 cut(s)	36, 428
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	4 cut(s)	18, 36, 549, 828
BlsI	GCNGC	4 cut(s)	19, 37, 550, 829
Bme1390I	CCNGG	3 cut(s)	327, 416, 1107
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	2 cut(s)	43, 1090
BmrFI	CCNGG	3 cut(s)	327, 416, 1107
BmsI	GCATC	2 cut(s)	646, 918
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	720
Bpu10I	CCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	690, 1070
Bsa29I	ATCGAT	1 cut(s)	915
BsaBI	GATNNNNATC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	45, 1105
Bse1I	ACTGG	2 cut(s)	471, 493
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	3 cut(s)	327, 416, 1107
BseCI	ATCGAT	1 cut(s)	915
BseDI	CCNNGG	2 cut(s)	45, 1105
BseGI	GGATG	1 cut(s)	634
BseJI	GATNNNNATC	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	471, 493
BseXI	GCAGC	4 cut(s)	22, 29, 560, 839
BshFI	GGCC	2 cut(s)	221, 696
BshVI	ATCGAT	1 cut(s)	915
BsmAI	GTCTC	2 cut(s)	113, 219
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	221, 696
Bsp143I	GATC	2 cut(s)	133, 1101
BspANI	GGCC	2 cut(s)	221, 696
BspCNI	CTCAG	1 cut(s)	109
BspDI	ATCGAT	1 cut(s)	915
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	43, 1090
BspMAI	CTGCAG	2 cut(s)	40, 432
BspPI	GGATC	2 cut(s)	128, 1096
BsrI	ACTGG	2 cut(s)	471, 493
BssECI	CCNNGG	2 cut(s)	45, 1105
BssMI	GATC	2 cut(s)	133, 1101
Bst2UI	CCWGG	3 cut(s)	327, 416, 1107
Bst4CI	ACNGT	1 cut(s)	1099
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	2 cut(s)	117, 645
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	634
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	136, 1104
BstMAI	GTCTC	2 cut(s)	113, 219
BstMBI	GATC	2 cut(s)	133, 1101
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 41, 99, 545, 650
BstNI	CCWGG	3 cut(s)	327, 416, 1107
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	3 cut(s)	325, 414, 1105
BstSFI	CTRYAG	2 cut(s)	36, 428
BstV1I	GCAGC	4 cut(s)	22, 29, 560, 839
BstV2I	GAAGAC	1 cut(s)	80
BstXI	CCANNNNNNTGG	1 cut(s)	893
Bsu15I	ATCGAT	1 cut(s)	915
BsuRI	GGCC	2 cut(s)	221, 696
BsuTUI	ATCGAT	1 cut(s)	915
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	634
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	694
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	695
ClaI	ATCGAT	1 cut(s)	915
CviAII	CATG	5 cut(s)	158, 293, 497, 1022, 1078
DdeI	CTNAG	2 cut(s)	117, 645
DpnI	GATC	2 cut(s)	135, 1103
DpnII	GATC	2 cut(s)	133, 1101
DraIII	CACNNNGTG	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	966
EcoRI	GAATTC	2 cut(s)	515, 663
EcoRII	CCWGG	3 cut(s)	325, 414, 1105
FaeI	CATG	5 cut(s)	161, 296, 500, 1025, 1081
FalI	AAGNNNNNCTT	2 cut(s)	1032, 1064
FatI	CATG	5 cut(s)	157, 292, 496, 1021, 1077
Fnu4HI	GCNGC	4 cut(s)	18, 36, 549, 828
FokI	GGATG	1 cut(s)	641
Fsp4HI	GCNGC	4 cut(s)	18, 36, 549, 828
FspBI	CTAG	4 cut(s)	336, 512, 542, 1037
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	4 cut(s)	18, 36, 549, 828
GsuI	CTGGAG	1 cut(s)	720
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	221, 696
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	5 cut(s)	161, 296, 500, 1025, 1081
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	3 cut(s)	523, 853, 964
Hpy166II	GTNNAC	2 cut(s)	348, 361
Hpy188I	TCNGA	5 cut(s)	118, 133, 201, 766, 1124
Hpy188III	TCNNGA	8 cut(s)	108, 182, 293, 341, 503, 520, 737, 857
Hpy8I	GTNNAC	2 cut(s)	348, 361
HpyAV	CCTTC	5 cut(s)	251, 578, 983, 1034, 1079
HpyCH4III	ACNGT	1 cut(s)	1099
HpyCH4IV	ACGT	1 cut(s)	891
HpyCH4V	TGCA	7 cut(s)	17, 38, 430, 595, 653, 659, 877
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 41, 99, 545, 650
HpyF3I	CTNAG	2 cut(s)	117, 645
HpySE526I	ACGT	1 cut(s)	891
Hsp92II	CATG	5 cut(s)	161, 296, 500, 1025, 1081
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	133, 1101
LmnI	GCTCC	2 cut(s)	41, 99
Lsp1109I	GCAGC	4 cut(s)	22, 29, 560, 839
LweI	GCATC	2 cut(s)	646, 918
MaeI	CTAG	4 cut(s)	336, 512, 542, 1037
MaeII	ACGT	1 cut(s)	891
MaeIII	GTNAC	2 cut(s)	473, 1027
MalI	GATC	2 cut(s)	135, 1103
MboI	GATC	2 cut(s)	133, 1101
MboII	GAAGA	7 cut(s)	80, 120, 218, 281, 693, 768, 928
MlsI	TGGCCA	1 cut(s)	221
MluNI	TGGCCA	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	9 cut(s)	21, 23, 265, 349, 594, 733, 740, 996, 1102
Mox20I	TGGCCA	1 cut(s)	221
MroXI	GAANNNNTTC	3 cut(s)	466, 760, 935
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	1 cut(s)	578
MslI	CAYNNNNRTG	2 cut(s)	480, 501
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	944
MspR9I	CCNGG	3 cut(s)	327, 416, 1107
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	3 cut(s)	327, 416, 1107
MwoI	GCNNNNNNNGC	5 cut(s)	14, 41, 99, 545, 650
NdeII	GATC	2 cut(s)	133, 1101
NlaIII	CATG	5 cut(s)	161, 296, 500, 1025, 1081
NlaIV	GGNNCC	2 cut(s)	43, 1090
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	500
PagI	TCATGA	1 cut(s)	292
PctI	GAATGC	1 cut(s)	306
PdmI	GAANNNNTTC	3 cut(s)	466, 760, 935
PfeI	GAWTC	3 cut(s)	523, 853, 964
PkrI	GCNGC	4 cut(s)	19, 37, 550, 829
Psp6I	CCWGG	3 cut(s)	325, 414, 1105
PspGI	CCWGG	3 cut(s)	325, 414, 1105
PspN4I	GGNNCC	2 cut(s)	43, 1090
PspPI	GGNCC	1 cut(s)	695
PstI	CTGCAG	2 cut(s)	40, 432
PvuII	CAGCTG	1 cut(s)	944
RseI	CAYNNNNRTG	2 cut(s)	480, 501
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	4 cut(s)	18, 36, 549, 828
Sau3AI	GATC	2 cut(s)	133, 1101
Sau96I	GGNCC	1 cut(s)	695
ScrFI	CCNGG	3 cut(s)	327, 416, 1107
SfaNI	GCATC	2 cut(s)	646, 918
SfcI	CTRYAG	2 cut(s)	36, 428
SmiMI	CAYNNNNRTG	2 cut(s)	480, 501
SmlI	CTYRAG	2 cut(s)	705, 1049
SmoI	CTYRAG	2 cut(s)	705, 1049
SspI	AATATT	3 cut(s)	391, 795, 901
SspMI	CTAG	4 cut(s)	336, 512, 542, 1037
StyD4I	CCNGG	3 cut(s)	325, 414, 1105
TaaI	ACNGT	1 cut(s)	1099
TaiI	ACGT	1 cut(s)	894
TaqI	TCGA	5 cut(s)	107, 181, 526, 915, 1094
TfiI	GAWTC	3 cut(s)	523, 853, 964
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	4 cut(s)	17, 35, 548, 827
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	3 cut(s)	281, 443, 645
TspGWI	ACGGA	2 cut(s)	312, 1046
TspRI	CASTG	1 cut(s)	493
XapI	RAATTY	7 cut(s)	229, 244, 263, 515, 634, 663, 749
XceI	RCATGY	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XmnI	GAANNNNTTC	3 cut(s)	466, 760, 935
XspI	CTAG	4 cut(s)	336, 512, 542, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.