Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Forward (+)

6967462 .. 6970652

Gene Structure 3191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGGATCTTTTACCACCTCTTACGGCGGCACAAGTCGATGCTAAGACTAAAGTCGATGAGAAAGTCGATTACTCGAACCTCCCTTCTCCTGTTCCCTATGAGGAACTCCACCGTGAAGCTCTCATGTCTTTAAAGTCGGACAATTTTGAGGGTTTACGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTCTCTCAGTCATAGTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTACTATCAAAATTCCAACAGCCCATTATGAGTTTGGTGCCAATTATTATGACCCAAAGTTGCTGCTCATCGGAAGGGTAATGACTGATGGTAGACTAAATGCGAGACTGAAAGCAGATTTAACTGATAAGTTAGTTGTGAAGGCGAATGCTCTGATAACAAATGAGGAACATATGTCACAAGCAATGTTCAACTTTGATTACATGGGATCAGACTACAGAGCTCAGCTTCAACTTGGACAGAGTGCCCTAATTGGAGCAACTTATATCCAGAGTGTTACAAACCATTTATCCTTGGGTGGTGAAATTTTCTGGGCTGGTGTGCCTCGGAAGTCGGGAATAGGCTATGCTGCTAGATACGAGACAGATAAAATGGTTGCTTCTGGTCAAGTTGCTAGCACGGGTGCTGTTGTTATGAACTATGTTCAGAAGATTTCAGATAAGGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAAGAGATGTAACAGCTAGTGTGGGTTATGACTATATGCTTAGACAGGCTCGTGTGCGGGGTAAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAGCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGATTAACAGTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

309

Amino Acids

34.25

Weight (kDa)

6.32

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	20 - 232	1.3e-50	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	824
AccI	GTMKAC	1 cut(s)	346
AciI	CCGC	4 cut(s)	5, 29, 790, 822
AclWI	GGATC	3 cut(s)	15, 469, 888
AcsI	RAATTY	2 cut(s)	264, 558
AfaI	GTAC	1 cut(s)	722
AgsI	TTSAA	6 cut(s)	184, 445, 485, 735, 807, 833
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	5 cut(s)	122, 476, 481, 749, 877
AluI	AGCT	5 cut(s)	122, 476, 481, 749, 877
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	2 cut(s)	352, 608
AlwI	GGATC	3 cut(s)	15, 469, 888
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	316, 602
ApoI	RAATTY	2 cut(s)	264, 558
ArsI	GACNNNNNNTTYG	2 cut(s)	887, 919
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	237, 566
AsuNHI	GCTAGC	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	478
BarI	GAAGNNNNNNTAC	2 cut(s)	881, 913
BauI	CACGAG	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	478
BbvI	GCAGC	2 cut(s)	303, 589
BccI	CCATC	2 cut(s)	211, 335
BceAI	ACGGC	1 cut(s)	42
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	352, 608
BfaI	CTAG	3 cut(s)	606, 648, 750
BfmI	CTRYAG	2 cut(s)	469, 870
BisI	GCNGC	3 cut(s)	30, 317, 603
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	3 cut(s)	31, 318, 604
Bme1390I	CCNGG	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	222, 292
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	2 cut(s)	31, 827
BmtI	GCTAGC	1 cut(s)	651
BoxI	GACNNNNGTC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	477
Bsa29I	ATCGAT	1 cut(s)	801
BsaJI	CCNNGG	3 cut(s)	174, 546, 578
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	175
BseCI	ATCGAT	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	174, 546, 578
BseGI	GGATG	1 cut(s)	818
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	3 cut(s)	214, 254, 491
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	2 cut(s)	303, 589
BshFI	GGCC	1 cut(s)	223
BshNI	GGYRCC	1 cut(s)	290
BshVI	ATCGAT	1 cut(s)	801
BsiHKAI	GWGCWC	1 cut(s)	478
BslFI	GGGAC	1 cut(s)	864
BsmAI	GTCTC	2 cut(s)	352, 608
BsmFI	GGGAC	1 cut(s)	864
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	478, 502
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	4 cut(s)	7, 461, 798, 880
Bsp1720I	GCTNAGC	1 cut(s)	477
BspACI	CCGC	4 cut(s)	5, 29, 790, 822
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	3 cut(s)	213, 253, 490
BspDI	ATCGAT	1 cut(s)	801
BspLI	GGNNCC	2 cut(s)	222, 292
BspMAI	CTGCAG	1 cut(s)	874
BspOI	GCTAGC	1 cut(s)	651
BspPI	GGATC	3 cut(s)	15, 469, 888
BspT107I	GGYRCC	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	824
BsrDI	GCAATG	1 cut(s)	444
BsrGI	TGTACA	1 cut(s)	720
BssECI	CCNNGG	3 cut(s)	174, 546, 578
BssMI	GATC	4 cut(s)	7, 461, 798, 880
BssSI	CACGAG	1 cut(s)	783
BssT1I	CCWWGG	1 cut(s)	546
Bst2BI	CACGAG	1 cut(s)	783
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	3 cut(s)	116, 812, 922
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	1 cut(s)	649
BstDEI	CTNAG	5 cut(s)	45, 200, 240, 477, 773
BstF5I	GGATG	1 cut(s)	818
BstKTI	GATC	4 cut(s)	10, 464, 801, 883
BstMAI	GTCTC	2 cut(s)	352, 608
BstMBI	GATC	4 cut(s)	7, 461, 798, 880
BstNI	CCWGG	1 cut(s)	175
BstPAI	GACNNNNGTC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	173
BstSFI	CTRYAG	2 cut(s)	469, 870
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	2 cut(s)	303, 589
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
Bsu15I	ATCGAT	1 cut(s)	801
BsuRI	GGCC	1 cut(s)	223
BsuTUI	ATCGAT	1 cut(s)	801
BtsCI	GGATG	1 cut(s)	818
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	1 cut(s)	649
Cfr13I	GGNCC	1 cut(s)	221
ClaI	ATCGAT	1 cut(s)	801
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	3 cut(s)	127, 457, 718
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	5 cut(s)	45, 200, 240, 477, 773
DpnI	GATC	4 cut(s)	9, 463, 800, 882
DpnII	GATC	4 cut(s)	7, 461, 798, 880
DraI	TTTAAA	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	476
Eco130I	CCWWGG	1 cut(s)	546
Eco24I	GRGCYC	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	476
EcoICRI	GAGCTC	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	3 cut(s)	130, 460, 721
FaqI	GGGAC	1 cut(s)	864
FatI	CATG	3 cut(s)	126, 456, 717
FauI	CCCGC	1 cut(s)	783
FauNDI	CATATG	1 cut(s)	426
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	30, 317, 603
FokI	GGATG	1 cut(s)	805
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	3 cut(s)	30, 317, 603
FspBI	CTAG	3 cut(s)	606, 648, 750
GluI	GCNGC	3 cut(s)	30, 317, 603
HaeIII	GGCC	1 cut(s)	223
Hin1II	CATG	3 cut(s)	130, 460, 721
HinfI	GANTC	3 cut(s)	184, 803, 852
HphI	GGTGA	2 cut(s)	237, 566
Hpy166II	GTNNAC	2 cut(s)	158, 347
Hpy188I	TCNGA	9 cut(s)	142, 189, 326, 408, 466, 582, 681, 691, 914
Hpy188III	TCNNGA	3 cut(s)	523, 588, 735
Hpy8I	GTNNAC	2 cut(s)	158, 347
HpyAV	CCTTC	4 cut(s)	96, 321, 388, 886
HpyCH4III	ACNGT	3 cut(s)	116, 812, 922
HpyCH4V	TGCA	2 cut(s)	818, 872
HpyF3I	CTNAG	5 cut(s)	45, 200, 240, 477, 773
Hsp92II	CATG	3 cut(s)	130, 460, 721
Kzo9I	GATC	4 cut(s)	7, 461, 798, 880
LmnI	GCTCC	1 cut(s)	509
Lsp1109I	GCAGC	2 cut(s)	303, 589
LweI	GCATC	2 cut(s)	31, 827
MaeI	CTAG	3 cut(s)	606, 648, 750
MaeIII	GTNAC	5 cut(s)	243, 429, 529, 699, 742
MalI	GATC	4 cut(s)	9, 463, 800, 882
MbiI	CCGCTC	1 cut(s)	824
MboI	GATC	4 cut(s)	7, 461, 798, 880
MboII	GAAGA	4 cut(s)	694, 845, 854, 901
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	2 cut(s)	478, 502
MluCI	AATT	6 cut(s)	145, 264, 295, 504, 558, 856
MlyI	GAGTC	1 cut(s)	846
MmeI	TCCRAC	2 cut(s)	120, 293
MnlI	CCTC	6 cut(s)	30, 92, 97, 145, 412, 588
MseI	TTAA	4 cut(s)	134, 374, 917, 928
MspR9I	CCNGG	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	175
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	4 cut(s)	7, 461, 798, 880
NheI	GCTAGC	1 cut(s)	647
NlaIII	CATG	3 cut(s)	130, 460, 721
NlaIV	GGNNCC	2 cut(s)	222, 292
NmuCI	GTSAC	3 cut(s)	243, 429, 699
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	184, 803
PkrI	GCNGC	3 cut(s)	31, 318, 604
PleI	GAGTC	1 cut(s)	846
PpsI	GAGTC	1 cut(s)	846
PshAI	GACNNNNGTC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	222, 292
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	874
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
SacI	GAGCTC	1 cut(s)	478
SaqAI	TTAA	4 cut(s)	134, 374, 917, 928
SatI	GCNGC	3 cut(s)	30, 317, 603
Sau3AI	GATC	4 cut(s)	7, 461, 798, 880
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	846
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	2 cut(s)	478, 502
SetI	ASST	9 cut(s)	22, 84, 124, 250, 478, 483, 699, 751, 879
SfaNI	GCATC	2 cut(s)	31, 827
SfcI	CTRYAG	2 cut(s)	469, 870
Sse9I	AATT	6 cut(s)	145, 264, 295, 504, 558, 856
SsiI	CCGC	4 cut(s)	5, 29, 790, 822
SspMI	CTAG	3 cut(s)	606, 648, 750
SstI	GAGCTC	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	3 cut(s)	116, 812, 922
TaqI	TCGA	6 cut(s)	39, 57, 69, 77, 165, 801
TasI	AATT	6 cut(s)	145, 264, 295, 504, 558, 856
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	184, 803
Tru1I	TTAA	4 cut(s)	134, 374, 917, 928
Tru9I	TTAA	4 cut(s)	134, 374, 917, 928
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	3 cut(s)	243, 429, 699
TseI	GCWGC	2 cut(s)	316, 602
Tsp45I	GTSAC	3 cut(s)	243, 429, 699
TspDTI	ATGAA	2 cut(s)	683, 706
TspRI	CASTG	1 cut(s)	715
XapI	RAATTY	2 cut(s)	264, 558
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	346
XspI	CTAG	3 cut(s)	606, 648, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.