Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Forward (+)

272034 .. 275377

Gene Structure 3344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGACGGGTGTTACTAGTACGAAGCAGAGCGAGGCAGCCGAGAAAGTCGACTACCGCAACCTGCCCTGCCCCATACCCTATGAAGAAATCCACCGCGAAGCCATGATGTCTTTAAAGCCAGACCTTTTTGAGGGGATGCGCTTTGACTTCACCAAAGGACTAAATCACAAGTTCTTCCTTAGCCACAGTGTATTCATGGGACCTACAACCATTCCTTCTCAAACTCCTGAAACCATAAAAATCCCTACTGCTAACTATGAGTTTGGTGCAAATTTCATAGACCACCCAAAGTGCCTGCTTTCTGGGAGACTTACAAATGAGCCACATATGTCTCATGGCATTGTCAATGTTGATTACAAGGGTTCAGACCACAGAGCCCAAGTTCAAATGGGAAATGGGACCCTAATTGGGGCAAATTACGTCCAGTCTGTGACTCCACATTTCTCTTTGGGTGGCGAAGTATTTTGGGCTGGTCAGCATCGAAAATCGGGTATCAGTTATGGGGCACGATTCAACACTGACAAGATGGTTGCTACGGGGCAGGTTGCTAGCACTGGAATGGTTGCATTGAACTATGTCCAGCGAGTGTCTGAGAAGGTTTCACTAGCATCAGACTTCATGTACAATTACATGTCAAGCGATGTCACAGCAAGTTTTGGGTATGATTACATTTTCAGACAGAGTCGTATTAAAGGAAAGATTGATACCAATGGCTGCACAGCTGCTTTTCTGGAAGAGAGATTAACTATGGGTCTTAATTTTATTCTTTCTGCAGAGATAGATCACGTGAAGAAAGACTACAAATTTGGGTTTGGGATGACAGTTGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

278

Amino Acids

30.86

Weight (kDa)

6.8

Isoelectric Point (pI)

21.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	23 - 270	9.7e-49	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	69, 532
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	96
AciI	CCGC	2 cut(s)	55, 94
AcsI	RAATTY	2 cut(s)	271, 803
AcvI	CACGTG	1 cut(s)	787
AfaI	GTAC	2 cut(s)	19, 623
AfiI	CCNNNNNNNGG	3 cut(s)	130, 408, 409
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	3 cut(s)	386, 514, 571
AhlI	ACTAGT	1 cut(s)	14
AluBI	AGCT	1 cut(s)	722
AluI	AGCT	1 cut(s)	722
Alw26I	GTCTC	2 cut(s)	301, 336
ApeKI	GCWGC	3 cut(s)	35, 714, 722
ApoI	RAATTY	2 cut(s)	271, 803
ArsI	GACNNNNNNTTYG	2 cut(s)	788, 820
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	200, 399
AsuHPI	GGTGA	1 cut(s)	142
AsuNHI	GCTAGC	1 cut(s)	548
AvaII	GGWCC	2 cut(s)	200, 399
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	379
BarI	GAAGNNNNNNTAC	2 cut(s)	782, 814
BbrPI	CACGTG	1 cut(s)	787
BbvI	GCAGC	3 cut(s)	47, 701, 709
BccI	CCATC	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	301, 336
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	3 cut(s)	15, 549, 605
BfmI	CTRYAG	1 cut(s)	771
BfuAI	ACCTGC	2 cut(s)	69, 532
BisI	GCNGC	3 cut(s)	36, 715, 723
BlsI	GCNGC	3 cut(s)	37, 716, 724
Bme18I	GGWCC	2 cut(s)	200, 399
BmgT120I	GGNCC	2 cut(s)	200, 399
BmiI	GGNNCC	3 cut(s)	201, 400, 401
BmsI	GCATC	3 cut(s)	126, 487, 617
BmtI	GCTAGC	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	787
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 408, 409
Bse1I	ACTGG	2 cut(s)	424, 559
BseGI	GGATG	2 cut(s)	141, 822
BseLI	CCNNNNNNNGG	3 cut(s)	130, 408, 409
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	2 cut(s)	424, 559
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	3 cut(s)	47, 701, 709
BsgI	GTGCAG	1 cut(s)	700
Bsh1236I	CGCG	1 cut(s)	96
BslFI	GGGAC	2 cut(s)	213, 412
BslI	CCNNNNNNNGG	3 cut(s)	130, 408, 409
BsmAI	GTCTC	2 cut(s)	301, 336
BsmFI	GGGAC	2 cut(s)	213, 412
Bsp1286I	GDGCHC	2 cut(s)	379, 508
Bsp1407I	TGTACA	1 cut(s)	621
Bsp143I	GATC	1 cut(s)	781
BspACI	CCGC	2 cut(s)	55, 94
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	3 cut(s)	201, 400, 401
BspMAI	CTGCAG	1 cut(s)	775
BspMI	ACCTGC	2 cut(s)	69, 532
BspOI	GCTAGC	1 cut(s)	552
BsrGI	TGTACA	1 cut(s)	621
BsrI	ACTGG	2 cut(s)	424, 559
BssMI	GATC	1 cut(s)	781
Bst4CI	ACNGT	2 cut(s)	188, 823
Bst6I	CTCTTC	1 cut(s)	729
BstAUI	TGTACA	1 cut(s)	621
BstBAI	YACGTR	1 cut(s)	787
BstC8I	GCNNGC	2 cut(s)	296, 550
BstDEI	CTNAG	2 cut(s)	179, 591
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	141, 822
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	1 cut(s)	784
BstMAI	GTCTC	2 cut(s)	301, 336
BstMBI	GATC	1 cut(s)	781
BstNSI	RCATGY	1 cut(s)	634
BstSFI	CTRYAG	1 cut(s)	771
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	3 cut(s)	47, 701, 709
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	2 cut(s)	141, 822
BtsIMutI	CAGTG	3 cut(s)	193, 516, 552
BveI	ACCTGC	2 cut(s)	69, 532
Cac8I	GCNNGC	2 cut(s)	296, 550
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	200, 399
Csp6I	GTAC	2 cut(s)	18, 622
CviAII	CATG	5 cut(s)	103, 196, 335, 619, 631
CviJI	RGCY	9 cut(s)	38, 101, 118, 183, 322, 377, 470, 714, 722
CviKI_1	RGCY	9 cut(s)	38, 101, 118, 183, 322, 377, 470, 714, 722
CviQI	GTAC	2 cut(s)	18, 622
DdeI	CTNAG	2 cut(s)	179, 591
DpnI	GATC	1 cut(s)	783
DpnII	GATC	1 cut(s)	781
DraI	TTTAAA	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	200, 399
Eco72I	CACGTG	1 cut(s)	787
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoO109I	RGGNCCY	2 cut(s)	200, 399
EcoT38I	GRGCYC	1 cut(s)	379
FaeI	CATG	5 cut(s)	106, 199, 338, 622, 634
FaqI	GGGAC	2 cut(s)	213, 412
FatI	CATG	5 cut(s)	102, 195, 334, 618, 630
FauNDI	CATATG	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	36, 715, 723
FokI	GGATG	2 cut(s)	148, 829
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	3 cut(s)	36, 715, 723
FspBI	CTAG	3 cut(s)	15, 549, 605
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	3 cut(s)	36, 715, 723
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	5 cut(s)	106, 199, 338, 622, 634
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	3 cut(s)	433, 510, 682
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	4 cut(s)	367, 592, 613, 677
Hpy188III	TCNNGA	2 cut(s)	227, 731
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	225, 589
HpyCH4III	ACNGT	2 cut(s)	188, 823
HpyCH4IV	ACGT	2 cut(s)	420, 786
HpyCH4V	TGCA	4 cut(s)	269, 566, 717, 773
HpyF3I	CTNAG	2 cut(s)	179, 591
HpySE526I	ACGT	2 cut(s)	420, 786
Hsp92II	CATG	5 cut(s)	106, 199, 338, 622, 634
HspAI	GCGC	1 cut(s)	139
KflI	GGGWCCC	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	781
Lsp1109I	GCAGC	3 cut(s)	47, 701, 709
LweI	GCATC	3 cut(s)	126, 487, 617
MaeI	CTAG	3 cut(s)	15, 549, 605
MaeII	ACGT	2 cut(s)	420, 786
MaeIII	GTNAC	3 cut(s)	10, 430, 643
MalI	GATC	1 cut(s)	783
MboI	GATC	1 cut(s)	781
MboII	GAAGA	4 cut(s)	95, 166, 746, 802
MhlI	GDGCHC	2 cut(s)	379, 508
MluCI	AATT	6 cut(s)	271, 405, 415, 625, 757, 803
MlyI	GAGTC	2 cut(s)	427, 691
MmeI	TCCRAC	1 cut(s)	805
MnlI	CCTC	2 cut(s)	25, 124
MseI	TTAA	4 cut(s)	113, 690, 743, 756
MslI	CAYNNNNRTG	1 cut(s)	557
MspA1I	CMGCKG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	96
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	1 cut(s)	781
NheI	GCTAGC	1 cut(s)	548
NlaIII	CATG	5 cut(s)	106, 199, 338, 622, 634
NlaIV	GGNNCC	3 cut(s)	201, 400, 401
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	2 cut(s)	430, 643
NspI	RCATGY	1 cut(s)	634
PciI	ACATGT	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	510
PflFI	GACNNNGTC	1 cut(s)	681
PkrI	GCNGC	3 cut(s)	37, 716, 724
PleI	GAGTC	2 cut(s)	427, 690
PmaCI	CACGTG	1 cut(s)	787
PmlI	CACGTG	1 cut(s)	787
PpsI	GAGTC	2 cut(s)	427, 690
Ppu21I	YACGTR	1 cut(s)	787
PpuMI	RGGWCCY	2 cut(s)	200, 399
PscI	ACATGT	1 cut(s)	630
Psp5II	RGGWCCY	2 cut(s)	200, 399
PspCI	CACGTG	1 cut(s)	787
PspN4I	GGNNCC	3 cut(s)	201, 400, 401
PspPI	GGNCC	2 cut(s)	200, 399
PspPPI	RGGWCCY	2 cut(s)	200, 399
PstI	CTGCAG	1 cut(s)	775
PsyI	GACNNNGTC	1 cut(s)	681
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	2 cut(s)	19, 623
RsaNI	GTAC	2 cut(s)	18, 622
RseI	CAYNNNNRTG	1 cut(s)	557
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	4 cut(s)	113, 690, 743, 756
SatI	GCNGC	3 cut(s)	36, 715, 723
Sau3AI	GATC	1 cut(s)	781
Sau96I	GGNCC	2 cut(s)	200, 399
SchI	GAGTC	2 cut(s)	427, 691
SduI	GDGCHC	2 cut(s)	379, 508
SetI	ASST	8 cut(s)	63, 126, 205, 423, 546, 600, 724, 789
SfaNI	GCATC	3 cut(s)	126, 487, 617
SfcI	CTRYAG	1 cut(s)	771
SinI	GGWCC	2 cut(s)	200, 399
SmiMI	CAYNNNNRTG	1 cut(s)	557
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	6 cut(s)	271, 405, 415, 625, 757, 803
SsiI	CCGC	2 cut(s)	55, 94
SspMI	CTAG	3 cut(s)	15, 549, 605
TaaI	ACNGT	2 cut(s)	188, 823
TaiI	ACGT	2 cut(s)	423, 789
TaqI	TCGA	2 cut(s)	48, 481
TasI	AATT	6 cut(s)	271, 405, 415, 625, 757, 803
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	4 cut(s)	113, 690, 743, 756
Tru9I	TTAA	4 cut(s)	113, 690, 743, 756
TscAI	CASTG	3 cut(s)	193, 523, 559
TseFI	GTSAC	2 cut(s)	430, 643
TseI	GCWGC	3 cut(s)	35, 714, 722
Tsp45I	GTSAC	2 cut(s)	430, 643
TspDTI	ATGAA	4 cut(s)	96, 184, 265, 607
TspRI	CASTG	3 cut(s)	193, 523, 559
Tth111I	GACNNNGTC	1 cut(s)	681
VpaK11BI	GGWCC	2 cut(s)	200, 399
XagI	CCTNNNNNAGG	1 cut(s)	128
XapI	RAATTY	2 cut(s)	271, 803
XceI	RCATGY	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	3 cut(s)	15, 549, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.