Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Reverse (-)

39591642 .. 39598128

Gene Structure 6487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG155400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCGGGCCTCGTTCCTCCTCCACCCACTGCTCCTGATACTCCCAAACAGAATGAGAGAGTCGATTACCTCAATCTCCCTTGCCCTATTCCCTACGACGAGATCTCCCGCGAAGCTTACATGTCTTTAAAGCCAGAGCTTTTCGAGGGGATGCGAATCGATTTTACCAAAGGTCTCAATCAGAAGTTCTCACTCAGTCACAGTGTGACCATGGGACCTACAGAGATTCCTTCCCAATCTACTGAAACTATTAAAATTCCCACTGCTCAGTATGAGTTTGGTGCCAATTTTTTGGACCCAAAGCTGATGCTTGTCGGGAGAGTATTGACTGATGGGAGGCTCAATGCGAGAGTAAAGTGTGATTTAACCGAGAATCTTTCTTTGAAGGCTAATTCTCAGCTTACCAACGAGCCACACATGTCACATGGCATGGCCAGTTTTGATTACAAGGGTAAAGATTTCCGGTCACAGTTTCAACTAGGGAATGGTGCATTGTTTGGTGCAAACTATATTCAGAGTGTAACCCCCAATCTGTCCGTGGGTGGTGAAGTGTTTTGGGCTGGTCAACATCGGAAGTCTGGTATTGGCTATGCTGCTCGATACAATACAGACAAGATGGTTGCCACAGGGCAGGTTGCTAGTACTGGAGTTGTTGCTATGAGCTATGTTCAGAAGGTGTCTGATAAGGTTTCTCTAGCATCAGATTTCATGTACAACTACTTATCAAGAGACGTGACAGCTAGCTTCGGTTATGATTACATTCTGCGACAGGTAGCTTTTGCTTCTGAATATTCAAAATCTTATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

269

Amino Acids

29.77

Weight (kDa)

6.44

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	28 - 259	6.5e-48	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	5, 109
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	205
AfaI	GTAC	2 cut(s)	643, 713
AflIII	ACRYGT	2 cut(s)	120, 417
AgsI	TTSAA	3 cut(s)	385, 476, 795
AjiI	CACGTC	1 cut(s)	733
AluBI	AGCT	8 cut(s)	116, 139, 304, 400, 663, 740, 744, 776
AluI	AGCT	8 cut(s)	116, 139, 304, 400, 663, 740, 744, 776
Alw26I	GTCTC	2 cut(s)	179, 723
AoxI	GGCC	2 cut(s)	7, 432
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	1 cut(s)	255
AspS9I	GGNCC	3 cut(s)	7, 215, 295
AsuHPI	GGTGA	1 cut(s)	557
AsuNHI	GCTAGC	1 cut(s)	740
AvaII	GGWCC	2 cut(s)	215, 295
BalI	TGGCCA	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	2 cut(s)	326, 610
BcoDI	GTCTC	2 cut(s)	179, 723
BfaI	CTAG	5 cut(s)	479, 639, 695, 741, 808
BfmI	CTRYAG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	622
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	595
BmcAI	AGTACT	1 cut(s)	643
Bme18I	GGWCC	2 cut(s)	215, 295
BmgBI	CACGTC	1 cut(s)	733
BmgT120I	GGNCC	3 cut(s)	7, 215, 295
BmiI	GGNNCC	3 cut(s)	216, 283, 297
BmsI	GCATC	3 cut(s)	141, 297, 707
BmtI	GCTAGC	1 cut(s)	744
BpmI	CTGGAG	1 cut(s)	666
Bsa29I	ATCGAT	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	210, 537
BsaWI	WCCGGW	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	2 cut(s)	435, 649
Bse8I	GATNNNNATC	1 cut(s)	155
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	210, 537
BseGI	GGATG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	155
BseMII	CTCAG	3 cut(s)	208, 281, 410
BseNI	ACTGG	2 cut(s)	435, 649
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	9, 434
BshNI	GGYRCC	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	228
BsmAI	GTCTC	2 cut(s)	179, 723
BsmBI	CGTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	9, 434
Bso31I	GGTCTC	1 cut(s)	179
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	1 cut(s)	102
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	2 cut(s)	5, 109
BspANI	GGCC	2 cut(s)	9, 434
BspCNI	CTCAG	3 cut(s)	207, 280, 409
BspDI	ATCGAT	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	216, 283, 297
BspMI	ACCTGC	1 cut(s)	622
BspOI	GCTAGC	1 cut(s)	744
BspT107I	GGYRCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	2 cut(s)	435, 649
BssECI	CCNNGG	2 cut(s)	210, 537
BssMI	GATC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	203, 471
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	7, 742
BstDEI	CTNAG	3 cut(s)	194, 267, 396
BstDSI	CCRYGG	2 cut(s)	210, 537
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	2 cut(s)	179, 723
BstMBI	GATC	1 cut(s)	102
BstNSI	RCATGY	2 cut(s)	124, 421
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	580
BstX2I	RGATCY	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	9, 434
BsuTUI	ATCGAT	1 cut(s)	159
BtgI	CCRYGG	2 cut(s)	210, 537
BtrI	CACGTC	1 cut(s)	733
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	2 cut(s)	27, 261
BtsIMutI	CAGTG	3 cut(s)	27, 208, 261
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	2 cut(s)	7, 742
Cfr13I	GGNCC	3 cut(s)	7, 215, 295
ClaI	ATCGAT	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	642, 712
CviAII	CATG	6 cut(s)	121, 211, 418, 425, 430, 709
CviQI	GTAC	2 cut(s)	642, 712
DdeI	CTNAG	3 cut(s)	194, 267, 396
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
DraI	TTTAAA	1 cut(s)	129
DraIII	CACNNNGTG	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	215, 295
EcoO109I	RGGNCCY	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	723
FaeI	CATG	6 cut(s)	124, 214, 421, 428, 433, 712
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	6 cut(s)	120, 210, 417, 424, 429, 708
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	5 cut(s)	479, 639, 695, 741, 808
GluI	GCNGC	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	9, 434
HapII	CCGG	1 cut(s)	463
Hin1II	CATG	6 cut(s)	124, 214, 421, 428, 433, 712
HincII	GTYRAC	1 cut(s)	566
HindII	GTYRAC	1 cut(s)	566
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	4 cut(s)	60, 156, 226, 373
HpaII	CCGG	1 cut(s)	463
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	1 cut(s)	566
Hpy188I	TCNGA	7 cut(s)	183, 516, 573, 672, 682, 703, 787
Hpy188III	TCNNGA	3 cut(s)	35, 316, 726
Hpy8I	GTNNAC	1 cut(s)	566
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	240, 379, 667
HpyCH4III	ACNGT	2 cut(s)	203, 471
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	2 cut(s)	491, 503
HpyF3I	CTNAG	3 cut(s)	194, 267, 396
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	6 cut(s)	124, 214, 421, 428, 433, 712
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	3 cut(s)	141, 297, 707
MaeI	CTAG	5 cut(s)	479, 639, 695, 741, 808
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	6 cut(s)	197, 205, 420, 465, 520, 733
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MflI	RGATCY	1 cut(s)	102
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	3 cut(s)	255, 286, 391
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	6 cut(s)	20, 27, 30, 80, 139, 330
Mox20I	TGGCCA	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	3 cut(s)	128, 252, 365
Msp20I	TGGCCA	1 cut(s)	434
MspI	CCGG	1 cut(s)	463
MvnI	CGCG	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	102
NheI	GCTAGC	1 cut(s)	740
NlaIII	CATG	6 cut(s)	124, 214, 421, 428, 433, 712
NlaIV	GGNNCC	3 cut(s)	216, 283, 297
NmuCI	GTSAC	5 cut(s)	197, 205, 420, 465, 733
NspI	RCATGY	2 cut(s)	124, 421
PciI	ACATGT	2 cut(s)	120, 417
PfeI	GAWTC	3 cut(s)	156, 226, 373
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	215
PscI	ACATGT	2 cut(s)	120, 417
Psp5II	RGGWCCY	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	216, 283, 297
PspPI	GGNCC	3 cut(s)	7, 215, 295
PspPPI	RGGWCCY	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	2 cut(s)	643, 713
RsaNI	GTAC	2 cut(s)	642, 712
SaqAI	TTAA	3 cut(s)	128, 252, 365
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	3 cut(s)	7, 215, 295
ScaI	AGTACT	1 cut(s)	643
SchI	GAGTC	1 cut(s)	69
SfaNI	GCATC	3 cut(s)	141, 297, 707
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	2 cut(s)	215, 295
Sse9I	AATT	3 cut(s)	255, 286, 391
SsiI	CCGC	2 cut(s)	5, 109
SspI	AATATT	1 cut(s)	791
SspMI	CTAG	5 cut(s)	479, 639, 695, 741, 808
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	203, 471
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	4 cut(s)	63, 144, 159, 598
TasI	AATT	3 cut(s)	255, 286, 391
TatI	WGTACW	2 cut(s)	641, 711
TfiI	GAWTC	3 cut(s)	156, 226, 373
Tru1I	TTAA	3 cut(s)	128, 252, 365
Tru9I	TTAA	3 cut(s)	128, 252, 365
TscAI	CASTG	3 cut(s)	34, 208, 268
TseFI	GTSAC	5 cut(s)	197, 205, 420, 465, 733
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	5 cut(s)	197, 205, 420, 465, 733
TspDTI	ATGAA	1 cut(s)	697
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	3 cut(s)	34, 208, 268
VpaK11BI	GGWCC	2 cut(s)	215, 295
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	2 cut(s)	124, 421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XspI	CTAG	5 cut(s)	479, 639, 695, 741, 808
ZrmI	AGTACT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.