Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Forward (+)

32285285 .. 32291003

Gene Structure 5719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCGGGCCTCGTTCCTCCTCCACCCACTGCTCCTGATACTCCCAAACAGAATGAGAGAGTCGATTACCTCAATCTCCCTTGCCCTATTCCCTACGACGAGATCGCCCGCGAAGCTTACATGTCTTTAAAGCCAGAGCTTTTCGAGGGGATGCGAATCGATTTTACCAAAGGTCTCAATCAGAAGTTCTCACTCAGTCACAGTGTGACCATGGGACCTACAGAGGTTCCTTCCCAATCTACTGAAACTATTAAAATTCCCACTGCTCAGTATGAGTTTGGTGCCAATTTTTTGGACCCAAAGAATCTTTCTTTGAAGGCTAATTCTCAGCTTACCAACGAGCCACACATGTCACATGGCATGGCCAGTTTTGATTACAAGGGTAAAGATTTCCGGTCACAGTTTCAACTAGGGAATGGTGCATTGTTTGGTGCAAACTATATTCAGAGTGTAACCCCCAATCTGTCCGTGGGTGGTGAAGTGTTTTGGGCTGGTCAGCATCGGAAGTCTGGTATTGGCTATGCTGCTCGATACAATACAGACAAGATGGTTGCCACAGGGCAGGTTGCTAGTACTGGAGTTGTTGCTATGAGCTATGTTCAGAAGGTGTCTGATAAGGTTTCTCTAGCATCAGATTTCATGTACAACTACTTATCAAGAGACGTGACAGCTAGCTTCGGTTATGATTACATTCTGCGACAGTGTCGTCTTAGAGGAAAGATTGATTCCAATGGAGTAGCTGCTGCCTTTTTGGAAGAGCGACTAAATATGGGTCTTAATTTTATTCTTTCTGCAGAGATTGATCATAGAAAGAAAGACTACAAATTTGGGTTTGGATTGACTGTTGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

285

Amino Acids

31.42

Weight (kDa)

6.97

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	28 - 277	1.1e-52	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	705
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	5, 109
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	2 cut(s)	255, 824
AdeI	CACNNNGTG	1 cut(s)	205
AfaI	GTAC	2 cut(s)	574, 644
AflIII	ACRYGT	2 cut(s)	120, 348
AgsI	TTSAA	2 cut(s)	316, 407
AjiI	CACGTC	1 cut(s)	664
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	7 cut(s)	116, 139, 331, 594, 671, 675, 740
AluI	AGCT	7 cut(s)	116, 139, 331, 594, 671, 675, 740
Alw26I	GTCTC	2 cut(s)	179, 654
AoxI	GGCC	2 cut(s)	7, 363
ApeKI	GCWGC	3 cut(s)	524, 740, 743
ApoI	RAATTY	2 cut(s)	255, 824
ArsI	GACNNNNNNTTYG	2 cut(s)	809, 841
AspS9I	GGNCC	3 cut(s)	7, 215, 295
AsuHPI	GGTGA	1 cut(s)	488
AsuNHI	GCTAGC	1 cut(s)	671
AvaII	GGWCC	2 cut(s)	215, 295
BalI	TGGCCA	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	281
BbvI	GCAGC	3 cut(s)	511, 727, 730
BccI	CCATC	1 cut(s)	541
BclI	TGATCA	1 cut(s)	802
BcoDI	GTCTC	2 cut(s)	179, 654
BfaI	CTAG	4 cut(s)	410, 570, 626, 672
BfmI	CTRYAG	2 cut(s)	219, 792
BfuAI	ACCTGC	1 cut(s)	553
BisI	GCNGC	3 cut(s)	525, 741, 744
BlsI	GCNGC	3 cut(s)	526, 742, 745
BmcAI	AGTACT	1 cut(s)	574
Bme18I	GGWCC	2 cut(s)	215, 295
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	3 cut(s)	7, 215, 295
BmiI	GGNNCC	4 cut(s)	216, 228, 283, 297
BmsI	GCATC	3 cut(s)	141, 508, 638
BmtI	GCTAGC	1 cut(s)	675
BpmI	CTGGAG	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	210, 468
BsaWI	WCCGGW	1 cut(s)	393
Bse1I	ACTGG	2 cut(s)	366, 580
Bse8I	GATNNNNATC	1 cut(s)	155
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	210, 468
BseGI	GGATG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	155
BseMII	CTCAG	3 cut(s)	208, 281, 341
BseNI	ACTGG	2 cut(s)	366, 580
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	511, 727, 730
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	9, 365
BshNI	GGYRCC	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	228
BsmAI	GTCTC	2 cut(s)	179, 654
BsmBI	CGTCTC	1 cut(s)	654
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	9, 365
Bso31I	GGTCTC	1 cut(s)	179
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	2 cut(s)	102, 802
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	2 cut(s)	5, 109
BspANI	GGCC	2 cut(s)	9, 365
BspCNI	CTCAG	3 cut(s)	207, 280, 340
BspDI	ATCGAT	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	4 cut(s)	216, 228, 283, 297
BspMAI	CTGCAG	1 cut(s)	796
BspMI	ACCTGC	1 cut(s)	553
BspOI	GCTAGC	1 cut(s)	675
BspQI	GCTCTTC	1 cut(s)	750
BspT107I	GGYRCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	366, 580
BssECI	CCNNGG	2 cut(s)	210, 468
BssMI	GATC	2 cut(s)	102, 802
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	4 cut(s)	203, 402, 702, 844
Bst6I	CTCTTC	1 cut(s)	750
BstAUI	TGTACA	1 cut(s)	642
BstC8I	GCNNGC	3 cut(s)	7, 109, 673
BstDEI	CTNAG	4 cut(s)	194, 267, 327, 710
BstDSI	CCRYGG	2 cut(s)	210, 468
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	105, 805
BstMAI	GTCTC	2 cut(s)	179, 654
BstMBI	GATC	2 cut(s)	102, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNSI	RCATGY	2 cut(s)	124, 352
BstSFI	CTRYAG	2 cut(s)	219, 792
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	511, 727, 730
BstXI	CCANNNNNNTGG	1 cut(s)	292
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	9, 365
BsuTUI	ATCGAT	1 cut(s)	159
BtgI	CCRYGG	2 cut(s)	210, 468
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	2 cut(s)	27, 261
BtsIMutI	CAGTG	4 cut(s)	27, 208, 261, 707
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	3 cut(s)	7, 109, 673
Cfr13I	GGNCC	3 cut(s)	7, 215, 295
ClaI	ATCGAT	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	573, 643
CviAII	CATG	6 cut(s)	121, 211, 349, 356, 361, 640
CviQI	GTAC	2 cut(s)	573, 643
DdeI	CTNAG	4 cut(s)	194, 267, 327, 710
DpnI	GATC	2 cut(s)	104, 804
DpnII	GATC	2 cut(s)	102, 802
DraI	TTTAAA	1 cut(s)	129
DraIII	CACNNNGTG	1 cut(s)	205
DrdI	GACNNNNNNGTC	1 cut(s)	705
DseDI	GACNNNNNNGTC	1 cut(s)	705
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Eco130I	CCWWGG	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	215, 295
EcoO109I	RGGNCCY	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	6 cut(s)	124, 214, 352, 359, 364, 643
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	6 cut(s)	120, 210, 348, 355, 360, 639
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	802
Fnu4HI	GCNGC	3 cut(s)	525, 741, 744
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	3 cut(s)	525, 741, 744
FspBI	CTAG	4 cut(s)	410, 570, 626, 672
GluI	GCNGC	3 cut(s)	525, 741, 744
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	2 cut(s)	9, 365
HapII	CCGG	1 cut(s)	394
Hin1II	CATG	6 cut(s)	124, 214, 352, 359, 364, 643
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	4 cut(s)	60, 156, 304, 725
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	1 cut(s)	488
Hpy188I	TCNGA	6 cut(s)	183, 447, 504, 603, 613, 634
Hpy188III	TCNNGA	2 cut(s)	35, 657
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	240, 310, 598
HpyCH4III	ACNGT	4 cut(s)	203, 402, 702, 844
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	3 cut(s)	422, 434, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	4 cut(s)	194, 267, 327, 710
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	6 cut(s)	124, 214, 352, 359, 364, 643
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	2 cut(s)	102, 802
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	9 cut(s)	48, 147, 379, 407, 477, 495, 543, 548, 561
Lsp1109I	GCAGC	3 cut(s)	511, 727, 730
LweI	GCATC	3 cut(s)	141, 508, 638
MaeI	CTAG	4 cut(s)	410, 570, 626, 672
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	6 cut(s)	197, 205, 351, 396, 451, 664
MalI	GATC	2 cut(s)	104, 804
MboI	GATC	2 cut(s)	102, 802
MboII	GAAGA	1 cut(s)	767
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	5 cut(s)	255, 286, 322, 778, 824
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	826
MnlI	CCTC	7 cut(s)	20, 27, 30, 80, 139, 217, 707
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	3 cut(s)	128, 252, 777
Msp20I	TGGCCA	1 cut(s)	365
MspI	CCGG	1 cut(s)	394
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	102, 802
NheI	GCTAGC	1 cut(s)	671
NlaIII	CATG	6 cut(s)	124, 214, 352, 359, 364, 643
NlaIV	GGNNCC	4 cut(s)	216, 228, 283, 297
NmuCI	GTSAC	5 cut(s)	197, 205, 351, 396, 664
NspI	RCATGY	2 cut(s)	124, 352
PciI	ACATGT	2 cut(s)	120, 348
PciSI	GCTCTTC	1 cut(s)	750
PfeI	GAWTC	3 cut(s)	156, 304, 725
PflFI	GACNNNGTC	1 cut(s)	702
PkrI	GCNGC	3 cut(s)	526, 742, 745
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	215
PscI	ACATGT	2 cut(s)	120, 348
Psp5II	RGGWCCY	1 cut(s)	215
PspN4I	GGNNCC	4 cut(s)	216, 228, 283, 297
PspPI	GGNCC	3 cut(s)	7, 215, 295
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	796
PsyI	GACNNNGTC	1 cut(s)	702
RsaI	GTAC	2 cut(s)	574, 644
RsaNI	GTAC	2 cut(s)	573, 643
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	3 cut(s)	128, 252, 777
SatI	GCNGC	3 cut(s)	525, 741, 744
Sau3AI	GATC	2 cut(s)	102, 802
Sau96I	GGNCC	3 cut(s)	7, 215, 295
ScaI	AGTACT	1 cut(s)	574
SchI	GAGTC	1 cut(s)	69
SfaNI	GCATC	3 cut(s)	141, 508, 638
SfcI	CTRYAG	2 cut(s)	219, 792
SinI	GGWCC	2 cut(s)	215, 295
Sse9I	AATT	5 cut(s)	255, 286, 322, 778, 824
SsiI	CCGC	2 cut(s)	5, 109
SspMI	CTAG	4 cut(s)	410, 570, 626, 672
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	4 cut(s)	203, 402, 702, 844
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	4 cut(s)	63, 144, 159, 529
TasI	AATT	5 cut(s)	255, 286, 322, 778, 824
TatI	WGTACW	2 cut(s)	572, 642
TfiI	GAWTC	3 cut(s)	156, 304, 725
Tru1I	TTAA	3 cut(s)	128, 252, 777
Tru9I	TTAA	3 cut(s)	128, 252, 777
TscAI	CASTG	4 cut(s)	34, 208, 268, 707
TseFI	GTSAC	5 cut(s)	197, 205, 351, 396, 664
TseI	GCWGC	3 cut(s)	524, 740, 743
Tsp45I	GTSAC	5 cut(s)	197, 205, 351, 396, 664
TspDTI	ATGAA	1 cut(s)	628
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	4 cut(s)	34, 208, 268, 707
Tth111I	GACNNNGTC	1 cut(s)	702
VpaK11BI	GGWCC	2 cut(s)	215, 295
XapI	RAATTY	2 cut(s)	255, 824
XceI	RCATGY	2 cut(s)	124, 352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XspI	CTAG	4 cut(s)	410, 570, 626, 672
ZrmI	AGTACT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.