Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Reverse (-)

27688121 .. 27694491

Gene Structure 6371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG153700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCGAATCGACTTTACCAAAGGTCTCAATCAGAAGTTCTCACTCAGTCACAGTGTGACCATGGGACCTACAGAGGTTCCTTCCCAATCTACTGAAACTATTAAAATTCCCACTGCTCAGTATGAGTTTGGTGCCAATTTTTTGGACCCAAAGCTGATGCTTGTCGGGAGAGTATTGACTGATGGGAGGCTCAATGCGAGAGTAAAGTGTGATTTAACCGAGAATCTTTCTTTGAAGGCTAATTCTCAGCTTACCAACGAGCCACACATGTCACATGGCATGGCCAGTTTTGATTACAAGGGTAAAGATTTCCGGTCACAGTTTCAACTAGGGAATGGTGCATTGTTTGGTGCAAACTATATTCAGAGTGTAACCCCCAATCTGTCCGTGGGTGGTGAAGTGTTTTGGGCTGGTCAGCATCGGAAGTCTGGTATTGGCTATGCTGCTCGATACAATACAGACAAGATGGTTGCCACAGGGCAGGTTGCTAGTACTGGAGTTGTTGCTATGAGCTATGTTCAGAAGGTGTCTGATAAGGTTTCTCTAGCATCAGATTTCATGTACAACTACTTATCAAGAGACGTGACAGCTAGCTTCGGTTATGATTACATTCTGCGACAGTGTCGTCTTAGAGGAAAGATCGATTCCAATGGTGTAGCTGCTGCCTTTTTGGAAGAGCGACTAAATATGGGTCTTAATTTTATTCTTTCTGCAGAGATTGATCATAGAAAGAAAGACTACAAATTTGGGTTTGGATTGACTGTTGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

257

Amino Acids

28.41

Weight (kDa)

9.08

Isoelectric Point (pI)

20.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	2 - 250	1.1e-59	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	624
Acc36I	ACCTGC	1 cut(s)	472
AccB1I	GGYRCC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	105, 743
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	2 cut(s)	493, 563
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	2 cut(s)	235, 326
AjiI	CACGTC	1 cut(s)	583
AluBI	AGCT	6 cut(s)	154, 250, 513, 590, 594, 659
AluI	AGCT	6 cut(s)	154, 250, 513, 590, 594, 659
Alw26I	GTCTC	2 cut(s)	29, 573
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	3 cut(s)	443, 659, 662
ApoI	RAATTY	2 cut(s)	105, 743
ArsI	GACNNNNNNTTYG	2 cut(s)	728, 760
AspS9I	GGNCC	2 cut(s)	65, 145
AsuHPI	GGTGA	1 cut(s)	407
AsuNHI	GCTAGC	1 cut(s)	590
AvaII	GGWCC	2 cut(s)	65, 145
BalI	TGGCCA	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	131
BbvI	GCAGC	3 cut(s)	430, 646, 649
BccI	CCATC	2 cut(s)	176, 460
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	2 cut(s)	29, 573
BfaI	CTAG	4 cut(s)	329, 489, 545, 591
BfmI	CTRYAG	2 cut(s)	69, 711
BfuAI	ACCTGC	1 cut(s)	472
BisI	GCNGC	3 cut(s)	444, 660, 663
BlsI	GCNGC	3 cut(s)	445, 661, 664
BmcAI	AGTACT	1 cut(s)	493
Bme18I	GGWCC	2 cut(s)	65, 145
BmgBI	CACGTC	1 cut(s)	583
BmgT120I	GGNCC	2 cut(s)	65, 145
BmiI	GGNNCC	4 cut(s)	66, 78, 133, 147
BmsI	GCATC	3 cut(s)	147, 427, 557
BmtI	GCTAGC	1 cut(s)	594
BpmI	CTGGAG	1 cut(s)	516
Bsa29I	ATCGAT	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	60, 387
BsaWI	WCCGGW	1 cut(s)	312
Bse1I	ACTGG	2 cut(s)	285, 499
BseCI	ATCGAT	1 cut(s)	642
BseDI	CCNNGG	2 cut(s)	60, 387
BseMII	CTCAG	3 cut(s)	58, 131, 260
BseNI	ACTGG	2 cut(s)	285, 499
BseXI	GCAGC	3 cut(s)	430, 646, 649
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	131
BshVI	ATCGAT	1 cut(s)	642
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	78
BsmAI	GTCTC	2 cut(s)	29, 573
BsmBI	CGTCTC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	29
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	639, 721
Bsp19I	CCATGG	1 cut(s)	60
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	3 cut(s)	57, 130, 259
BspDI	ATCGAT	1 cut(s)	642
BspLI	GGNNCC	4 cut(s)	66, 78, 133, 147
BspMAI	CTGCAG	1 cut(s)	715
BspMI	ACCTGC	1 cut(s)	472
BspOI	GCTAGC	1 cut(s)	594
BspQI	GCTCTTC	1 cut(s)	669
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	285, 499
BssECI	CCNNGG	2 cut(s)	60, 387
BssMI	GATC	2 cut(s)	639, 721
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	4 cut(s)	53, 321, 621, 763
Bst6I	CTCTTC	1 cut(s)	669
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	1 cut(s)	592
BstDEI	CTNAG	4 cut(s)	44, 117, 246, 629
BstDSI	CCRYGG	2 cut(s)	60, 387
BstKTI	GATC	2 cut(s)	642, 724
BstMAI	GTCTC	2 cut(s)	29, 573
BstMBI	GATC	2 cut(s)	639, 721
BstNSI	RCATGY	1 cut(s)	271
BstSFI	CTRYAG	2 cut(s)	69, 711
BstV1I	GCAGC	3 cut(s)	430, 646, 649
BstXI	CCANNNNNNTGG	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	284
BsuTUI	ATCGAT	1 cut(s)	642
BtgI	CCRYGG	2 cut(s)	60, 387
BtrI	CACGTC	1 cut(s)	583
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	3 cut(s)	58, 111, 626
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	592
Cfr13I	GGNCC	2 cut(s)	65, 145
ClaI	ATCGAT	1 cut(s)	642
Csp6I	GTAC	2 cut(s)	492, 562
CviAII	CATG	5 cut(s)	61, 268, 275, 280, 559
CviQI	GTAC	2 cut(s)	492, 562
DdeI	CTNAG	4 cut(s)	44, 117, 246, 629
DpnI	GATC	2 cut(s)	641, 723
DpnII	GATC	2 cut(s)	639, 721
DraIII	CACNNNGTG	1 cut(s)	55
DrdI	GACNNNNNNGTC	1 cut(s)	624
DseDI	GACNNNNNNGTC	1 cut(s)	624
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	65, 145
EcoO109I	RGGNCCY	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	573
FaeI	CATG	5 cut(s)	64, 271, 278, 283, 562
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	5 cut(s)	60, 267, 274, 279, 558
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	444, 660, 663
Fsp4HI	GCNGC	3 cut(s)	444, 660, 663
FspBI	CTAG	4 cut(s)	329, 489, 545, 591
GluI	GCNGC	3 cut(s)	444, 660, 663
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	313
Hin1II	CATG	5 cut(s)	64, 271, 278, 283, 562
HinfI	GANTC	3 cut(s)	6, 223, 644
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	1 cut(s)	407
Hpy188I	TCNGA	6 cut(s)	33, 366, 423, 522, 532, 553
Hpy188III	TCNNGA	2 cut(s)	166, 576
HpyAV	CCTTC	3 cut(s)	90, 229, 517
HpyCH4III	ACNGT	4 cut(s)	53, 321, 621, 763
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	3 cut(s)	341, 353, 713
HpyF3I	CTNAG	4 cut(s)	44, 117, 246, 629
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	5 cut(s)	64, 271, 278, 283, 562
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	2 cut(s)	639, 721
LguI	GCTCTTC	1 cut(s)	669
LpnPI	CCDG	7 cut(s)	298, 326, 396, 414, 462, 467, 480
Lsp1109I	GCAGC	3 cut(s)	430, 646, 649
LweI	GCATC	3 cut(s)	147, 427, 557
MaeI	CTAG	4 cut(s)	329, 489, 545, 591
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	6 cut(s)	47, 55, 270, 315, 370, 583
MalI	GATC	2 cut(s)	641, 723
MboI	GATC	2 cut(s)	639, 721
MboII	GAAGA	1 cut(s)	686
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	5 cut(s)	105, 136, 241, 697, 743
MluNI	TGGCCA	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	745
MnlI	CCTC	3 cut(s)	67, 180, 626
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	3 cut(s)	102, 215, 696
Msp20I	TGGCCA	1 cut(s)	284
MspI	CCGG	1 cut(s)	313
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	639, 721
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	5 cut(s)	64, 271, 278, 283, 562
NlaIV	GGNNCC	4 cut(s)	66, 78, 133, 147
NmuCI	GTSAC	5 cut(s)	47, 55, 270, 315, 583
NspI	RCATGY	1 cut(s)	271
PciI	ACATGT	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	6, 223, 644
PflFI	GACNNNGTC	1 cut(s)	621
PkrI	GCNGC	3 cut(s)	445, 661, 664
PpuMI	RGGWCCY	1 cut(s)	65
PscI	ACATGT	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	65
PspN4I	GGNNCC	4 cut(s)	66, 78, 133, 147
PspPI	GGNCC	2 cut(s)	65, 145
PspPPI	RGGWCCY	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	715
PsyI	GACNNNGTC	1 cut(s)	621
RsaI	GTAC	2 cut(s)	493, 563
RsaNI	GTAC	2 cut(s)	492, 562
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	3 cut(s)	102, 215, 696
SatI	GCNGC	3 cut(s)	444, 660, 663
Sau3AI	GATC	2 cut(s)	639, 721
Sau96I	GGNCC	2 cut(s)	65, 145
ScaI	AGTACT	1 cut(s)	493
SfaNI	GCATC	3 cut(s)	147, 427, 557
SfcI	CTRYAG	2 cut(s)	69, 711
SinI	GGWCC	2 cut(s)	65, 145
Sse9I	AATT	5 cut(s)	105, 136, 241, 697, 743
SspMI	CTAG	4 cut(s)	329, 489, 545, 591
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	4 cut(s)	53, 321, 621, 763
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	3 cut(s)	9, 448, 642
TasI	AATT	5 cut(s)	105, 136, 241, 697, 743
TatI	WGTACW	2 cut(s)	491, 561
TfiI	GAWTC	3 cut(s)	6, 223, 644
Tru1I	TTAA	3 cut(s)	102, 215, 696
Tru9I	TTAA	3 cut(s)	102, 215, 696
TscAI	CASTG	3 cut(s)	58, 118, 626
TseFI	GTSAC	5 cut(s)	47, 55, 270, 315, 583
TseI	GCWGC	3 cut(s)	443, 659, 662
Tsp45I	GTSAC	5 cut(s)	47, 55, 270, 315, 583
TspDTI	ATGAA	1 cut(s)	547
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	3 cut(s)	58, 118, 626
Tth111I	GACNNNGTC	1 cut(s)	621
VpaK11BI	GGWCC	2 cut(s)	65, 145
XapI	RAATTY	2 cut(s)	105, 743
XceI	RCATGY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XspI	CTAG	4 cut(s)	329, 489, 545, 591
ZrmI	AGTACT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.