Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Reverse (-)

29861277 .. 29867500

Gene Structure 6224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G012690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCGGGCCTCGTTCCTCCTCCACCCACTGCTCCTGATACTCCCAAACAGAATGAGAGAGTCGATTACCTCAATCTCCCTTGCCCTATTCCCTACGACGAGATCTCCCGCGAAGCTTACATGTCTTTAAAGCCAGAGCTTTTCGAGGGGATGCGAATCGATTTTACCAAAGGTCTCAATCAGAAGTTCTCACTCAGTCACAGTGTGACCATGGGACCTACAGAGGTTCCTTCCCAATCTACTGAAACTATTAAAATTCCCACTGCTCAGTATGAGTTTGGTGCCAATTTTTTGGACCCAAAGCTGATGCTTGTCGGGAGAGTATTGACTGATGGGAGGCTCAATGCGAGAGTAAAGTGTGATTTAACCGAGAATCTTTCTTTGAAGGCTAATTCTCAGCTTACCAACGAGCCACACATGTCACATGGCATGGCCAGTTTTGATTACAAGGGTAAAGATTTCCGGTCACAGTTTCAACTAGGGAATGGTGCATTGTTTGGTGCAAACTATATTCAGAGTGTAACCCCCAATCTGTCCGTGGGTGGTGAAGTGTTTTGGGCTGGTCAGCATCGGAAGTCTGGTATTGGCTATGCTGCTCGATACAATACAGACAAGATGGTTGCCACGGGGCAGGTTGCTAGTACTGGAGTTGTTGCTATGAGCTATGTTCAGAAGGTGTCTGATAAGGTTTCTCTAGCATCAGATTTCATGTACAACTACTTATCAAGAGACGTGACAGCTAGCTTCGGTTATGATTACATTCTGCGACAGTGTCGTCTTAGAGGAAAGATTGATTCCAATGGAGTAGCTGCTGCCTTTTTGGAAGAGCGACTAAATATGGGTCTTAATTTTATTCTTTCTGCAGAGATTGATCATAGAAAGAAAGACTACAAATTTGGGTTTGGATTGACTGTTGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

307

Amino Acids

33.99

Weight (kDa)

7.68

Isoelectric Point (pI)

28.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	28 - 300	3.8e-65	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	774
Acc36I	ACCTGC	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	5, 109
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	2 cut(s)	255, 893
AdeI	CACNNNGTG	1 cut(s)	205
AfaI	GTAC	2 cut(s)	643, 713
AflIII	ACRYGT	2 cut(s)	120, 417
AgsI	TTSAA	2 cut(s)	385, 476
AjiI	CACGTC	1 cut(s)	733
AluBI	AGCT	8 cut(s)	116, 139, 304, 400, 663, 740, 744, 809
AluI	AGCT	8 cut(s)	116, 139, 304, 400, 663, 740, 744, 809
Alw26I	GTCTC	2 cut(s)	179, 723
AoxI	GGCC	2 cut(s)	7, 432
ApeKI	GCWGC	3 cut(s)	593, 809, 812
ApoI	RAATTY	2 cut(s)	255, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
AspS9I	GGNCC	3 cut(s)	7, 215, 295
AsuHPI	GGTGA	1 cut(s)	557
AsuNHI	GCTAGC	1 cut(s)	740
AvaII	GGWCC	2 cut(s)	215, 295
BalI	TGGCCA	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	281
BbvI	GCAGC	3 cut(s)	580, 796, 799
BccI	CCATC	2 cut(s)	326, 610
BclI	TGATCA	1 cut(s)	871
BcoDI	GTCTC	2 cut(s)	179, 723
BfaI	CTAG	4 cut(s)	479, 639, 695, 741
BfmI	CTRYAG	2 cut(s)	219, 861
BfuAI	ACCTGC	1 cut(s)	622
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	3 cut(s)	594, 810, 813
BlsI	GCNGC	3 cut(s)	595, 811, 814
BmcAI	AGTACT	1 cut(s)	643
Bme18I	GGWCC	2 cut(s)	215, 295
BmgBI	CACGTC	1 cut(s)	733
BmgT120I	GGNCC	3 cut(s)	7, 215, 295
BmiI	GGNNCC	4 cut(s)	216, 228, 283, 297
BmsI	GCATC	4 cut(s)	141, 297, 577, 707
BmtI	GCTAGC	1 cut(s)	744
BpmI	CTGGAG	1 cut(s)	666
Bsa29I	ATCGAT	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	3 cut(s)	210, 537, 624
BsaWI	WCCGGW	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	2 cut(s)	435, 649
Bse8I	GATNNNNATC	1 cut(s)	155
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	3 cut(s)	210, 537, 624
BseGI	GGATG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	155
BseMII	CTCAG	3 cut(s)	208, 281, 410
BseNI	ACTGG	2 cut(s)	435, 649
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	580, 796, 799
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	9, 434
BshNI	GGYRCC	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	228
BsmAI	GTCTC	2 cut(s)	179, 723
BsmBI	CGTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	9, 434
Bso31I	GGTCTC	1 cut(s)	179
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	2 cut(s)	102, 871
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	2 cut(s)	5, 109
BspANI	GGCC	2 cut(s)	9, 434
BspCNI	CTCAG	3 cut(s)	207, 280, 409
BspDI	ATCGAT	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	4 cut(s)	216, 228, 283, 297
BspMAI	CTGCAG	1 cut(s)	865
BspMI	ACCTGC	1 cut(s)	622
BspOI	GCTAGC	1 cut(s)	744
BspQI	GCTCTTC	1 cut(s)	819
BspT107I	GGYRCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	2 cut(s)	435, 649
BssECI	CCNNGG	3 cut(s)	210, 537, 624
BssMI	GATC	2 cut(s)	102, 871
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	4 cut(s)	203, 471, 771, 913
Bst6I	CTCTTC	1 cut(s)	819
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	7, 742
BstDEI	CTNAG	4 cut(s)	194, 267, 396, 779
BstDSI	CCRYGG	3 cut(s)	210, 537, 624
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	105, 874
BstMAI	GTCTC	2 cut(s)	179, 723
BstMBI	GATC	2 cut(s)	102, 871
BstNSI	RCATGY	2 cut(s)	124, 421
BstSFI	CTRYAG	2 cut(s)	219, 861
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	580, 796, 799
BstX2I	RGATCY	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	9, 434
BsuTUI	ATCGAT	1 cut(s)	159
BtgI	CCRYGG	3 cut(s)	210, 537, 624
BtrI	CACGTC	1 cut(s)	733
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	2 cut(s)	27, 261
BtsIMutI	CAGTG	4 cut(s)	27, 208, 261, 776
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	2 cut(s)	7, 742
Cfr13I	GGNCC	3 cut(s)	7, 215, 295
ClaI	ATCGAT	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	642, 712
CviAII	CATG	6 cut(s)	121, 211, 418, 425, 430, 709
CviQI	GTAC	2 cut(s)	642, 712
DdeI	CTNAG	4 cut(s)	194, 267, 396, 779
DpnI	GATC	2 cut(s)	104, 873
DpnII	GATC	2 cut(s)	102, 871
DraI	TTTAAA	1 cut(s)	129
DraIII	CACNNNGTG	1 cut(s)	205
DrdI	GACNNNNNNGTC	1 cut(s)	774
DseDI	GACNNNNNNGTC	1 cut(s)	774
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	819
EarI	CTCTTC	1 cut(s)	819
Eco130I	CCWWGG	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	215, 295
EcoO109I	RGGNCCY	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	723
FaeI	CATG	6 cut(s)	124, 214, 421, 428, 433, 712
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	6 cut(s)	120, 210, 417, 424, 429, 708
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	871
Fnu4HI	GCNGC	3 cut(s)	594, 810, 813
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	3 cut(s)	594, 810, 813
FspBI	CTAG	4 cut(s)	479, 639, 695, 741
GluI	GCNGC	3 cut(s)	594, 810, 813
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	9, 434
HapII	CCGG	1 cut(s)	463
Hin1II	CATG	6 cut(s)	124, 214, 421, 428, 433, 712
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	4 cut(s)	60, 156, 373, 794
HpaII	CCGG	1 cut(s)	463
HphI	GGTGA	1 cut(s)	557
Hpy188I	TCNGA	6 cut(s)	183, 516, 573, 672, 682, 703
Hpy188III	TCNNGA	3 cut(s)	35, 316, 726
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	240, 379, 667
HpyCH4III	ACNGT	4 cut(s)	203, 471, 771, 913
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	3 cut(s)	491, 503, 863
HpyF3I	CTNAG	4 cut(s)	194, 267, 396, 779
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	6 cut(s)	124, 214, 421, 428, 433, 712
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	2 cut(s)	102, 871
LguI	GCTCTTC	1 cut(s)	819
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	8 cut(s)	48, 147, 448, 476, 546, 564, 617, 630
Lsp1109I	GCAGC	3 cut(s)	580, 796, 799
LweI	GCATC	4 cut(s)	141, 297, 577, 707
MaeI	CTAG	4 cut(s)	479, 639, 695, 741
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	6 cut(s)	197, 205, 420, 465, 520, 733
MalI	GATC	2 cut(s)	104, 873
MboI	GATC	2 cut(s)	102, 871
MboII	GAAGA	1 cut(s)	836
MflI	RGATCY	1 cut(s)	102
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	5 cut(s)	255, 286, 391, 847, 893
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	895
MnlI	CCTC	8 cut(s)	20, 27, 30, 80, 139, 217, 330, 776
Mox20I	TGGCCA	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	4 cut(s)	128, 252, 365, 846
Msp20I	TGGCCA	1 cut(s)	434
MspI	CCGG	1 cut(s)	463
MvnI	CGCG	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	102, 871
NheI	GCTAGC	1 cut(s)	740
NlaIII	CATG	6 cut(s)	124, 214, 421, 428, 433, 712
NlaIV	GGNNCC	4 cut(s)	216, 228, 283, 297
NmuCI	GTSAC	5 cut(s)	197, 205, 420, 465, 733
NspI	RCATGY	2 cut(s)	124, 421
PciI	ACATGT	2 cut(s)	120, 417
PciSI	GCTCTTC	1 cut(s)	819
PfeI	GAWTC	3 cut(s)	156, 373, 794
PflFI	GACNNNGTC	1 cut(s)	771
PkrI	GCNGC	3 cut(s)	595, 811, 814
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	215
PscI	ACATGT	2 cut(s)	120, 417
Psp5II	RGGWCCY	1 cut(s)	215
PspN4I	GGNNCC	4 cut(s)	216, 228, 283, 297
PspPI	GGNCC	3 cut(s)	7, 215, 295
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	865
PsuI	RGATCY	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	771
RsaI	GTAC	2 cut(s)	643, 713
RsaNI	GTAC	2 cut(s)	642, 712
SapI	GCTCTTC	1 cut(s)	819
SaqAI	TTAA	4 cut(s)	128, 252, 365, 846
SatI	GCNGC	3 cut(s)	594, 810, 813
Sau3AI	GATC	2 cut(s)	102, 871
Sau96I	GGNCC	3 cut(s)	7, 215, 295
ScaI	AGTACT	1 cut(s)	643
SchI	GAGTC	1 cut(s)	69
SfaNI	GCATC	4 cut(s)	141, 297, 577, 707
SfcI	CTRYAG	2 cut(s)	219, 861
SinI	GGWCC	2 cut(s)	215, 295
Sse9I	AATT	5 cut(s)	255, 286, 391, 847, 893
SsiI	CCGC	2 cut(s)	5, 109
SspMI	CTAG	4 cut(s)	479, 639, 695, 741
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	4 cut(s)	203, 471, 771, 913
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	4 cut(s)	63, 144, 159, 598
TasI	AATT	5 cut(s)	255, 286, 391, 847, 893
TatI	WGTACW	2 cut(s)	641, 711
TfiI	GAWTC	3 cut(s)	156, 373, 794
Tru1I	TTAA	4 cut(s)	128, 252, 365, 846
Tru9I	TTAA	4 cut(s)	128, 252, 365, 846
TscAI	CASTG	4 cut(s)	34, 208, 268, 776
TseFI	GTSAC	5 cut(s)	197, 205, 420, 465, 733
TseI	GCWGC	3 cut(s)	593, 809, 812
Tsp45I	GTSAC	5 cut(s)	197, 205, 420, 465, 733
TspDTI	ATGAA	1 cut(s)	697
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	4 cut(s)	34, 208, 268, 776
Tth111I	GACNNNGTC	1 cut(s)	771
VpaK11BI	GGWCC	2 cut(s)	215, 295
XapI	RAATTY	2 cut(s)	255, 893
XceI	RCATGY	2 cut(s)	124, 421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XspI	CTAG	4 cut(s)	479, 639, 695, 741
ZrmI	AGTACT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.