Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Forward (+)

14229521 .. 14230057

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0092300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCCCTGTAACCCCCACGTCTACGGCCTCTGCAACTTTACCTCCGTCACGATCGGGCCCCACCTCAGCGGCTCTCTCTTCGACACGGGCTCCTTCCCGATCGACTGCCCCACGCCGTCGTCGGCGGTGTTCCCGTTTGACTTCACCACCGTTACCTGGGAGTACCGCGCTCTAATGTTAACCCCGCGCGGGAGCTTTGTGTGTGCGAAGGTTCCAGATTCTGACCAAATCATCATCACTAGAGGCGGTTCCCGCCACACCATGTTCAGCGCCGCCGGGAGCAGGAGGACCTCAGTGGAGAGGTATGATATATGTAGAGACGAGTGGGTGGCCATGGAAGAGATGCCGAGCTTTCGGGCCGGGTGTGTGGGGTTCTTTGCTAGAGATGTGGAGGAGAGGGAATTTTGGGTGATGGGCGGGTACAGCCAGGCCAGGACTATATCGGAGGTGGTACCGGTGGACGAGTATTACCGGAATGCGGTGGTGGTGGAATTGACGAATCGGAATAGTGATGGCAAGAGGAGGGAGACATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

178

Amino Acids

20.01

Weight (kDa)

5.4

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	3 cut(s)	168, 187, 189
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	3 cut(s)	164, 422, 453
AfiI	CCNNNNNNNGG	4 cut(s)	156, 189, 282, 478
AflIII	ACRYGT	1 cut(s)	530
AgeI	ACCGGT	1 cut(s)	454
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	3 cut(s)	155, 426, 431
AluBI	AGCT	2 cut(s)	195, 351
AluI	AGCT	2 cut(s)	195, 351
Alw26I	GTCTC	2 cut(s)	312, 521
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	5 cut(s)	25, 56, 330, 357, 429
ApaI	GGGCCC	1 cut(s)	60
ApoI	RAATTY	1 cut(s)	401
AsiGI	ACCGGT	1 cut(s)	454
Asp718I	GGTACC	1 cut(s)	451
AspLEI	GCGC	3 cut(s)	170, 189, 272
AspS9I	GGNCC	4 cut(s)	56, 57, 288, 357
AsuC2I	CCSGG	2 cut(s)	277, 361
AsuHPI	GGTGA	2 cut(s)	136, 421
AvaII	GGWCC	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	2 cut(s)	60, 92
BbvCI	CCTCAGC	1 cut(s)	65
BccI	CCATC	2 cut(s)	406, 506
BceAI	ACGGC	2 cut(s)	40, 100
BciT130I	CCWGG	3 cut(s)	157, 428, 433
BcnI	CCSGG	2 cut(s)	277, 361
BcoDI	GTCTC	2 cut(s)	312, 521
BfaI	CTAG	2 cut(s)	240, 381
BfoI	RGCGCY	1 cut(s)	273
BisI	GCNGC	2 cut(s)	70, 273
BlsI	GCNGC	2 cut(s)	71, 274
Bme1390I	CCNGG	5 cut(s)	157, 277, 361, 428, 433
Bme18I	GGWCC	1 cut(s)	288
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	4 cut(s)	56, 57, 288, 357
BmiI	GGNNCC	6 cut(s)	58, 59, 91, 213, 250, 453
BmrFI	CCNGG	5 cut(s)	157, 277, 361, 428, 433
BmsI	GCATC	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	65
BpuMI	CCSGG	2 cut(s)	277, 361
BsaJI	CCNNGG	2 cut(s)	156, 333
BsaWI	WCCGGW	2 cut(s)	454, 471
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 74, 104
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 189, 282, 478
Bse118I	RCCGGY	1 cut(s)	454
BseBI	CCWGG	3 cut(s)	157, 428, 433
BseDI	CCNNGG	2 cut(s)	156, 333
BseLI	CCNNNNNNNGG	4 cut(s)	156, 189, 282, 478
BseMII	CTCAG	2 cut(s)	79, 306
BseRI	GAGGAG	2 cut(s)	407, 535
BseSI	GKGCMC	1 cut(s)	60
Bsh1236I	CGCG	3 cut(s)	168, 187, 189
Bsh1285I	CGRYCG	2 cut(s)	54, 102
BshFI	GGCC	5 cut(s)	27, 58, 332, 359, 431
BshNI	GGYRCC	1 cut(s)	451
BshTI	ACCGGT	1 cut(s)	454
BsiEI	CGRYCG	2 cut(s)	54, 102
BsiSI	CCGG	4 cut(s)	276, 360, 455, 472
BslI	CCNNNNNNNGG	4 cut(s)	156, 189, 282, 478
BsmAI	GTCTC	2 cut(s)	312, 521
BsmBI	CGTCTC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	5 cut(s)	27, 58, 332, 359, 431
Bsp120I	GGGCCC	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	60, 92
Bsp143I	GATC	2 cut(s)	51, 99
Bsp19I	CCATGG	1 cut(s)	333
BspANI	GGCC	5 cut(s)	27, 58, 332, 359, 431
BspCNI	CTCAG	2 cut(s)	78, 305
BspFNI	CGCG	3 cut(s)	168, 187, 189
BspLI	GGNNCC	6 cut(s)	58, 59, 91, 213, 250, 453
BspT107I	GGYRCC	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	454
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	156, 333
BssMI	GATC	2 cut(s)	51, 99
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	3 cut(s)	157, 428, 433
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	2 cut(s)	83, 333
BstDEI	CTNAG	2 cut(s)	65, 292
BstDSI	CCRYGG	1 cut(s)	333
BstFNI	CGCG	3 cut(s)	168, 187, 189
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	3 cut(s)	170, 189, 272
BstKTI	GATC	2 cut(s)	54, 102
BstMAI	GTCTC	2 cut(s)	312, 521
BstMBI	GATC	2 cut(s)	51, 99
BstMCI	CGRYCG	2 cut(s)	54, 102
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 423
BstNI	CCWGG	3 cut(s)	157, 428, 433
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	5 cut(s)	155, 275, 359, 426, 431
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	3 cut(s)	168, 187, 189
BsuRI	GGCC	5 cut(s)	27, 58, 332, 359, 431
BtgI	CCRYGG	1 cut(s)	333
BtrI	CACGTC	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	300
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	3 cut(s)	170, 189, 272
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	4 cut(s)	56, 57, 288, 357
Csp6I	GTAC	3 cut(s)	163, 421, 452
CspAI	ACCGGT	1 cut(s)	454
CviAII	CATG	3 cut(s)	262, 334, 531
CviQI	GTAC	3 cut(s)	163, 421, 452
DdeI	CTNAG	2 cut(s)	65, 292
DpnI	GATC	2 cut(s)	53, 101
DpnII	GATC	2 cut(s)	51, 99
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	83, 333
EarI	CTCTTC	2 cut(s)	83, 333
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	2 cut(s)	60, 92
Eco47I	GGWCC	1 cut(s)	288
EcoO109I	RGGNCCY	2 cut(s)	57, 288
EcoRII	CCWGG	3 cut(s)	155, 426, 431
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	2 cut(s)	60, 92
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	3 cut(s)	265, 337, 534
FaiI	YATR	7 cut(s)	263, 306, 311, 313, 335, 440, 532
FatI	CATG	3 cut(s)	261, 333, 530
FauI	CCCGC	4 cut(s)	182, 192, 260, 410
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	70, 273
FriOI	GRGCYC	2 cut(s)	60, 92
Fsp4HI	GCNGC	2 cut(s)	70, 273
FspBI	CTAG	2 cut(s)	240, 381
GlaI	GCGC	3 cut(s)	169, 188, 271
GluI	GCNGC	2 cut(s)	70, 273
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	5 cut(s)	27, 58, 332, 359, 431
HapII	CCGG	4 cut(s)	276, 360, 455, 472
HhaI	GCGC	3 cut(s)	170, 189, 272
Hin1II	CATG	3 cut(s)	265, 337, 534
Hin6I	GCGC	3 cut(s)	168, 187, 270
HinP1I	GCGC	3 cut(s)	168, 187, 270
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	2 cut(s)	218, 499
HpaI	GTTAAC	1 cut(s)	180
HpaII	CCGG	4 cut(s)	276, 360, 455, 472
HphI	GGTGA	2 cut(s)	136, 421
Hpy166II	GTNNAC	3 cut(s)	22, 180, 460
Hpy188I	TCNGA	3 cut(s)	223, 445, 504
Hpy188III	TCNNGA	3 cut(s)	49, 97, 215
Hpy8I	GTNNAC	3 cut(s)	22, 180, 460
Hpy99I	CGWCG	2 cut(s)	121, 124
HpyAV	CCTTC	2 cut(s)	103, 202
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 423
HpyF3I	CTNAG	2 cut(s)	65, 292
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	265, 337, 534
HspAI	GCGC	3 cut(s)	168, 187, 270
KpnI	GGTACC	1 cut(s)	455
KspAI	GTTAAC	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	51, 99
LmnI	GCTCC	3 cut(s)	95, 192, 279
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	2 cut(s)	240, 381
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	8, 46, 151
MalI	GATC	2 cut(s)	53, 101
MboI	GATC	2 cut(s)	51, 99
MboII	GAAGA	2 cut(s)	70, 350
MhlI	GDGCHC	2 cut(s)	60, 92
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	2 cut(s)	401, 491
MluNI	TGGCCA	1 cut(s)	332
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	69
MspI	CCGG	4 cut(s)	276, 360, 455, 472
MspR9I	CCNGG	5 cut(s)	157, 277, 361, 428, 433
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	3 cut(s)	157, 428, 433
MvnI	CGCG	3 cut(s)	168, 187, 189
MwoI	GCNNNNNNNGC	2 cut(s)	252, 423
NciI	CCSGG	2 cut(s)	277, 361
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	2 cut(s)	51, 99
NlaIII	CATG	3 cut(s)	265, 337, 534
NlaIV	GGNNCC	6 cut(s)	58, 59, 91, 213, 250, 453
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	534
PciI	ACATGT	1 cut(s)	530
PctI	GAATGC	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	218, 499
PinAI	ACCGGT	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	71, 274
Ple19I	CGATCG	2 cut(s)	54, 102
PpuMI	RGGWCCY	1 cut(s)	288
PscI	ACATGT	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	288
Psp6I	CCWGG	3 cut(s)	155, 426, 431
PspGI	CCWGG	3 cut(s)	155, 426, 431
PspN4I	GGNNCC	6 cut(s)	58, 59, 91, 213, 250, 453
PspOMI	GGGCCC	1 cut(s)	56
PspPI	GGNCC	4 cut(s)	56, 57, 288, 357
PspPPI	RGGWCCY	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	221
PvuI	CGATCG	2 cut(s)	54, 102
RsaI	GTAC	3 cut(s)	164, 422, 453
RsaNI	GTAC	3 cut(s)	163, 421, 452
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	70, 273
Sau3AI	GATC	2 cut(s)	51, 99
Sau96I	GGNCC	4 cut(s)	56, 57, 288, 357
ScrFI	CCNGG	5 cut(s)	157, 277, 361, 428, 433
SduI	GDGCHC	2 cut(s)	60, 92
SfaNI	GCATC	1 cut(s)	333
SinI	GGWCC	1 cut(s)	288
Sse9I	AATT	2 cut(s)	401, 491
SspMI	CTAG	2 cut(s)	240, 381
StyD4I	CCNGG	5 cut(s)	155, 275, 359, 426, 431
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	81, 102
TasI	AATT	2 cut(s)	401, 491
TauI	GCSGC	2 cut(s)	72, 275
TfiI	GAWTC	2 cut(s)	218, 499
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	288
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	2 cut(s)	240, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.