Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Reverse (-)

58614771 .. 58618509

Gene Structure 3739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG447800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGGGTGTTACTAGTACGAAGCAGAGCGAGGCAGCCGAGAAAGTCGACTACCGCAACCTGCCCTGCCCCATACCCTATGAAGAAATCCACCGCGAAGCCATGATGTCTTTAAAGCCAGACCTTTTTGAGGGGATGCGCTTTGACTTCACCAAAGGACTAAATCACAAGTTCTTCCTTAGCCACAGTGTATTCATGGGACCTACAACCATTCCTTCTCAAACTCCTGAAACCATAAAAATCCCTACTGCTAACTATGAGTTTGGTGCAAATTTCATAGACCACCCAAAGTGCCTGCTTTCTGGGAGAGTAATGACAGATGGAAGACTCAGTGCAAGAGTGAAGTATGACTTGAGTGACAATTTCACTTTGAAGGCTAATGCTCAGCTTACAAATGAGCCACATATGTCTCATGGCATTGTCAATGTTGATTACAAGGGTTCAGACCACAGAGCCCAAGTTCAGATGGGAAATGGGACCCTAATTGGGGCGAATTACGTCCAGTCTGTGACTCCACATTTCTCTTTGGGTGGCGAAGTATTTTGGGCTGGTCAGCATCGAAAATCGGGTATCAGTTATGGGGCACGATTCAACACTGACAAGATGGTTGCTACGGGGCAGGTTGCTAGCACTGGAATGGTTGCATTGAACTATGTCCAGCGAGTGTCTGAGAAGGTTTCACTAGCATCAGACTTCATGTACAATTACATGTCAAGCGATGTCACAGCAAGTTTTGGCTATGATTACATTTTCAGACAGAGTCGTATTAGAGGAAAGATTGATACCAATGGCTGCACAGCTGCTTTTCTGGAAGAGAGATTAACTATGGGTCTTAATTTTATTCTTTCTGCAGAGATAGATCACATGAAGAAAGACTACAAATTTGGGTTTGGGATGACAGTTGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

303

Amino Acids

33.78

Weight (kDa)

7.15

Isoelectric Point (pI)

21.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	23 - 296	3.4e-61	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	69, 610
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	96
AciI	CCGC	3 cut(s)	5, 55, 94
AcsI	RAATTY	2 cut(s)	271, 881
AfaI	GTAC	2 cut(s)	19, 701
AfiI	CCNNNNNNNGG	3 cut(s)	130, 486, 487
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	3 cut(s)	373, 592, 649
AhlI	ACTAGT	1 cut(s)	14
AluBI	AGCT	2 cut(s)	388, 800
AluI	AGCT	2 cut(s)	388, 800
Alw26I	GTCTC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	35, 792, 800
ApoI	RAATTY	2 cut(s)	271, 881
ArsI	GACNNNNNNTTYG	2 cut(s)	866, 898
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	200, 477
AsuHPI	GGTGA	1 cut(s)	142
AsuNHI	GCTAGC	1 cut(s)	626
AvaII	GGWCC	2 cut(s)	200, 477
BaeGI	GKGCMC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	457
BarI	GAAGNNNNNNTAC	2 cut(s)	860, 892
BbsI	GAAGAC	1 cut(s)	331
BbvI	GCAGC	3 cut(s)	47, 779, 787
BccI	CCATC	3 cut(s)	314, 460, 598
BcoDI	GTCTC	1 cut(s)	414
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	3 cut(s)	15, 627, 683
BfmI	CTRYAG	1 cut(s)	849
BfuAI	ACCTGC	2 cut(s)	69, 610
BisI	GCNGC	3 cut(s)	36, 793, 801
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	3 cut(s)	37, 794, 802
Bme18I	GGWCC	2 cut(s)	200, 477
BmgT120I	GGNCC	2 cut(s)	200, 477
BmiI	GGNNCC	3 cut(s)	201, 478, 479
BmsI	GCATC	3 cut(s)	126, 565, 695
BmtI	GCTAGC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 486, 487
Bse1I	ACTGG	2 cut(s)	502, 637
BseGI	GGATG	2 cut(s)	141, 900
BseLI	CCNNNNNNNGG	3 cut(s)	130, 486, 487
BseMII	CTCAG	3 cut(s)	343, 398, 660
BseNI	ACTGG	2 cut(s)	502, 637
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	3 cut(s)	47, 779, 787
BsgI	GTGCAG	1 cut(s)	778
Bsh1236I	CGCG	1 cut(s)	96
BslFI	GGGAC	2 cut(s)	213, 490
BslI	CCNNNNNNNGG	3 cut(s)	130, 486, 487
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	2 cut(s)	213, 490
Bsp1286I	GDGCHC	2 cut(s)	457, 586
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	1 cut(s)	859
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	3 cut(s)	5, 55, 94
BspCNI	CTCAG	3 cut(s)	342, 397, 661
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	3 cut(s)	201, 478, 479
BspMAI	CTGCAG	1 cut(s)	853
BspMI	ACCTGC	2 cut(s)	69, 610
BspOI	GCTAGC	1 cut(s)	630
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	2 cut(s)	502, 637
BssMI	GATC	1 cut(s)	859
Bst4CI	ACNGT	2 cut(s)	188, 901
Bst6I	CTCTTC	1 cut(s)	807
BstAUI	TGTACA	1 cut(s)	699
BstC8I	GCNNGC	2 cut(s)	296, 628
BstDEI	CTNAG	4 cut(s)	179, 329, 384, 669
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	141, 900
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	1 cut(s)	862
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	1 cut(s)	859
BstNSI	RCATGY	1 cut(s)	712
BstSFI	CTRYAG	1 cut(s)	849
BstSLI	GKGCMC	1 cut(s)	586
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	3 cut(s)	47, 779, 787
BstV2I	GAAGAC	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	732
BtsCI	GGATG	2 cut(s)	141, 900
BtsIMutI	CAGTG	4 cut(s)	193, 337, 594, 630
BveI	ACCTGC	2 cut(s)	69, 610
Cac8I	GCNNGC	2 cut(s)	296, 628
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	200, 477
Csp6I	GTAC	2 cut(s)	18, 700
CviAII	CATG	6 cut(s)	103, 196, 413, 697, 709, 865
CviQI	GTAC	2 cut(s)	18, 700
DdeI	CTNAG	4 cut(s)	179, 329, 384, 669
DpnI	GATC	1 cut(s)	861
DpnII	GATC	1 cut(s)	859
DraI	TTTAAA	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Eco24I	GRGCYC	1 cut(s)	457
Eco47I	GGWCC	2 cut(s)	200, 477
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoO109I	RGGNCCY	2 cut(s)	200, 477
EcoT38I	GRGCYC	1 cut(s)	457
FaeI	CATG	6 cut(s)	106, 199, 416, 700, 712, 868
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	2 cut(s)	213, 490
FatI	CATG	6 cut(s)	102, 195, 412, 696, 708, 864
FauNDI	CATATG	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	36, 793, 801
FokI	GGATG	2 cut(s)	148, 907
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	3 cut(s)	36, 793, 801
FspBI	CTAG	3 cut(s)	15, 627, 683
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	3 cut(s)	36, 793, 801
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	6 cut(s)	106, 199, 416, 700, 712, 868
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	4 cut(s)	327, 511, 588, 760
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	5 cut(s)	445, 465, 670, 691, 755
Hpy188III	TCNNGA	2 cut(s)	227, 809
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	225, 367, 667
HpyCH4III	ACNGT	2 cut(s)	188, 901
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	5 cut(s)	269, 335, 644, 795, 851
HpyF3I	CTNAG	4 cut(s)	179, 329, 384, 669
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	6 cut(s)	106, 199, 416, 700, 712, 868
HspAI	GCGC	1 cut(s)	139
KflI	GGGWCCC	1 cut(s)	477
Kzo9I	GATC	1 cut(s)	859
Lsp1109I	GCAGC	3 cut(s)	47, 779, 787
LweI	GCATC	3 cut(s)	126, 565, 695
MaeI	CTAG	3 cut(s)	15, 627, 683
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	4 cut(s)	10, 356, 508, 721
MalI	GATC	1 cut(s)	861
MboI	GATC	1 cut(s)	859
MboII	GAAGA	5 cut(s)	95, 166, 336, 824, 880
MhlI	GDGCHC	2 cut(s)	457, 586
MluCI	AATT	7 cut(s)	271, 361, 483, 493, 703, 835, 881
MlyI	GAGTC	3 cut(s)	321, 505, 769
MmeI	TCCRAC	1 cut(s)	883
MnlI	CCTC	3 cut(s)	25, 124, 764
MseI	TTAA	3 cut(s)	113, 821, 834
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	1 cut(s)	800
MvnI	CGCG	1 cut(s)	96
NdeI	CATATG	1 cut(s)	405
NdeII	GATC	1 cut(s)	859
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	6 cut(s)	106, 199, 416, 700, 712, 868
NlaIV	GGNNCC	3 cut(s)	201, 478, 479
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	3 cut(s)	356, 508, 721
NspI	RCATGY	1 cut(s)	712
PciI	ACATGT	1 cut(s)	708
PfeI	GAWTC	1 cut(s)	588
PflFI	GACNNNGTC	1 cut(s)	759
PkrI	GCNGC	3 cut(s)	37, 794, 802
PleI	GAGTC	3 cut(s)	321, 505, 768
PpsI	GAGTC	3 cut(s)	321, 505, 768
PpuMI	RGGWCCY	2 cut(s)	200, 477
PscI	ACATGT	1 cut(s)	708
Psp5II	RGGWCCY	2 cut(s)	200, 477
PspN4I	GGNNCC	3 cut(s)	201, 478, 479
PspPI	GGNCC	2 cut(s)	200, 477
PspPPI	RGGWCCY	2 cut(s)	200, 477
PstI	CTGCAG	1 cut(s)	853
PsyI	GACNNNGTC	1 cut(s)	759
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	2 cut(s)	19, 701
RsaNI	GTAC	2 cut(s)	18, 700
RseI	CAYNNNNRTG	1 cut(s)	635
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	113, 821, 834
SatI	GCNGC	3 cut(s)	36, 793, 801
Sau3AI	GATC	1 cut(s)	859
Sau96I	GGNCC	2 cut(s)	200, 477
SchI	GAGTC	3 cut(s)	321, 505, 769
SduI	GDGCHC	2 cut(s)	457, 586
SetI	ASST	8 cut(s)	63, 126, 205, 390, 501, 624, 678, 802
SfaNI	GCATC	3 cut(s)	126, 565, 695
SfcI	CTRYAG	1 cut(s)	849
SinI	GGWCC	2 cut(s)	200, 477
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	7 cut(s)	271, 361, 483, 493, 703, 835, 881
SsiI	CCGC	3 cut(s)	5, 55, 94
SspMI	CTAG	3 cut(s)	15, 627, 683
TaaI	ACNGT	2 cut(s)	188, 901
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	2 cut(s)	48, 559
TasI	AATT	7 cut(s)	271, 361, 483, 493, 703, 835, 881
TatI	WGTACW	1 cut(s)	699
TfiI	GAWTC	1 cut(s)	588
Tru1I	TTAA	3 cut(s)	113, 821, 834
Tru9I	TTAA	3 cut(s)	113, 821, 834
TscAI	CASTG	4 cut(s)	193, 337, 601, 637
TseFI	GTSAC	3 cut(s)	356, 508, 721
TseI	GCWGC	3 cut(s)	35, 792, 800
Tsp45I	GTSAC	3 cut(s)	356, 508, 721
TspDTI	ATGAA	5 cut(s)	96, 184, 265, 685, 881
TspRI	CASTG	4 cut(s)	193, 337, 601, 637
Tth111I	GACNNNGTC	1 cut(s)	759
VpaK11BI	GGWCC	2 cut(s)	200, 477
XagI	CCTNNNNNAGG	1 cut(s)	128
XapI	RAATTY	2 cut(s)	271, 881
XceI	RCATGY	1 cut(s)	712
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	3 cut(s)	15, 627, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.