Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Reverse (-)

36338342 .. 36344856

Gene Structure 6515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG164300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGATATCTTTCTACAACACTTGTTTAATCGTGACTCTGCCCTGTTAAAAATTGGTGTTATGCAGCTGATGCTTGTCGGGAGAGTATTGACTGATGGGAGACTCAATGCGAGAGTAAAGTGTGATTTAACCGAGAATCTTTCTTTGAAGGCTAATTCTCAGCTTACCAACGAGCCACACATGTCACATGGCATGGCCAGTTTTGATTACAAGGGTAAAGATTTCCGGTCACAGTTTCAACTAGGGAATGGTGCATTGTTTGGTGCAAACTATATTCAGAGTGTAACCCCCAATCTGTCCGTGGGTGGTGAAGTGTTTTGGGCTGGTCAGCATCGGAAGTCTGGTATTGGCTATGCTGCTCGATACAATACAGACAAGATGGTTGCCACAGGGCAGGTTGCTAGTACTGGAGTTGTTGCTATGAGCTATGTTCAGAAGGTGTCTGATAAGGTTTCTCTAGCATCAGATTTCATGTACAACTACTTATCAAGAGACGTGACAGCTAGCTTCGGTTATGATTACATTCTGCGACAGTGTCGTCTTAGAGGAAAGATTGATTCCAATGGAGTAGCTGCTGCCTTTTTGGAAGAGCGACTAAATATGGGTCTTAATTTTATTCTTTCTGCAGAGATTGATCATAGAAAGAAAGACTACAAATTTGGGTTTGGATTGACTGTTGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

228

Amino Acids

25.31

Weight (kDa)

9.15

Isoelectric Point (pI)

21.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	19 - 221	1e-52	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	537
Acc36I	ACCTGC	1 cut(s)	385
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	656
AfaI	GTAC	2 cut(s)	406, 476
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	148, 239
AjiI	CACGTC	1 cut(s)	496
AluBI	AGCT	6 cut(s)	67, 163, 426, 503, 507, 572
AluI	AGCT	6 cut(s)	67, 163, 426, 503, 507, 572
Alw26I	GTCTC	2 cut(s)	94, 486
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	4 cut(s)	64, 356, 572, 575
ApoI	RAATTY	1 cut(s)	656
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
AsuHPI	GGTGA	1 cut(s)	320
AsuNHI	GCTAGC	1 cut(s)	503
BalI	TGGCCA	1 cut(s)	197
BbvI	GCAGC	4 cut(s)	76, 343, 559, 562
BccI	CCATC	2 cut(s)	89, 373
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	94, 486
BfaI	CTAG	4 cut(s)	242, 402, 458, 504
BfmI	CTRYAG	1 cut(s)	624
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	4 cut(s)	65, 357, 573, 576
BlsI	GCNGC	4 cut(s)	66, 358, 574, 577
BmcAI	AGTACT	1 cut(s)	406
BmgBI	CACGTC	1 cut(s)	496
BmsI	GCATC	3 cut(s)	60, 340, 470
BmtI	GCTAGC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	225
Bse1I	ACTGG	2 cut(s)	198, 412
BseDI	CCNNGG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	198, 412
BseXI	GCAGC	4 cut(s)	76, 343, 559, 562
BshFI	GGCC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	94, 486
BsmBI	CGTCTC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	197
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	1 cut(s)	634
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	172
BspMAI	CTGCAG	1 cut(s)	628
BspMI	ACCTGC	1 cut(s)	385
BspOI	GCTAGC	1 cut(s)	507
BspQI	GCTCTTC	1 cut(s)	582
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	198, 412
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	634
Bst4CI	ACNGT	3 cut(s)	234, 534, 676
Bst6I	CTCTTC	1 cut(s)	582
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstAUI	TGTACA	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	505
BstDEI	CTNAG	2 cut(s)	159, 542
BstDSI	CCRYGG	1 cut(s)	300
BstKTI	GATC	1 cut(s)	637
BstMAI	GTCTC	2 cut(s)	94, 486
BstMBI	GATC	1 cut(s)	634
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	4 cut(s)	76, 343, 559, 562
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	539
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	405, 475
CviAII	CATG	4 cut(s)	181, 188, 193, 472
CviQI	GTAC	2 cut(s)	405, 475
DdeI	CTNAG	2 cut(s)	159, 542
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
DrdI	GACNNNNNNGTC	1 cut(s)	537
DseDI	GACNNNNNNGTC	1 cut(s)	537
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	7
Esp3I	CGTCTC	1 cut(s)	486
FaeI	CATG	4 cut(s)	184, 191, 196, 475
FatI	CATG	4 cut(s)	180, 187, 192, 471
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	4 cut(s)	65, 357, 573, 576
Fsp4HI	GCNGC	4 cut(s)	65, 357, 573, 576
FspBI	CTAG	4 cut(s)	242, 402, 458, 504
GluI	GCNGC	4 cut(s)	65, 357, 573, 576
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	226
Hin1II	CATG	4 cut(s)	184, 191, 196, 475
HinfI	GANTC	4 cut(s)	35, 102, 136, 557
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	1 cut(s)	320
Hpy188I	TCNGA	5 cut(s)	279, 336, 435, 445, 466
Hpy188III	TCNNGA	3 cut(s)	32, 79, 489
HpyAV	CCTTC	2 cut(s)	142, 430
HpyCH4III	ACNGT	3 cut(s)	234, 534, 676
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	4 cut(s)	64, 254, 266, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	2 cut(s)	159, 542
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	4 cut(s)	184, 191, 196, 475
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	1 cut(s)	634
LguI	GCTCTTC	1 cut(s)	582
LpnPI	CCDG	8 cut(s)	56, 211, 239, 309, 327, 375, 380, 393
Lsp1109I	GCAGC	4 cut(s)	76, 343, 559, 562
LweI	GCATC	3 cut(s)	60, 340, 470
MaeI	CTAG	4 cut(s)	242, 402, 458, 504
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	5 cut(s)	32, 183, 228, 283, 496
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MboII	GAAGA	1 cut(s)	599
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	4 cut(s)	51, 154, 610, 656
MluNI	TGGCCA	1 cut(s)	197
MlyI	GAGTC	2 cut(s)	29, 96
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	1 cut(s)	539
Mox20I	TGGCCA	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	4 cut(s)	27, 47, 128, 609
Msp20I	TGGCCA	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	1 cut(s)	634
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	4 cut(s)	184, 191, 196, 475
NmuCI	GTSAC	4 cut(s)	32, 183, 228, 496
NspI	RCATGY	1 cut(s)	184
PciI	ACATGT	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	136, 557
PflFI	GACNNNGTC	1 cut(s)	534
PkrI	GCNGC	4 cut(s)	66, 358, 574, 577
PleI	GAGTC	2 cut(s)	29, 96
PpsI	GAGTC	2 cut(s)	29, 96
PscI	ACATGT	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	628
PsyI	GACNNNGTC	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	2 cut(s)	406, 476
RsaNI	GTAC	2 cut(s)	405, 475
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	4 cut(s)	27, 47, 128, 609
SatI	GCNGC	4 cut(s)	65, 357, 573, 576
Sau3AI	GATC	1 cut(s)	634
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	2 cut(s)	29, 96
SfaNI	GCATC	3 cut(s)	60, 340, 470
SfcI	CTRYAG	1 cut(s)	624
Sse9I	AATT	4 cut(s)	51, 154, 610, 656
SspMI	CTAG	4 cut(s)	242, 402, 458, 504
TaaI	ACNGT	3 cut(s)	234, 534, 676
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	1 cut(s)	361
TasI	AATT	4 cut(s)	51, 154, 610, 656
TatI	WGTACW	2 cut(s)	404, 474
TfiI	GAWTC	2 cut(s)	136, 557
Tru1I	TTAA	4 cut(s)	27, 47, 128, 609
Tru9I	TTAA	4 cut(s)	27, 47, 128, 609
TscAI	CASTG	1 cut(s)	539
TseFI	GTSAC	4 cut(s)	32, 183, 228, 496
TseI	GCWGC	4 cut(s)	64, 356, 572, 575
Tsp45I	GTSAC	4 cut(s)	32, 183, 228, 496
TspDTI	ATGAA	1 cut(s)	460
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	539
Tth111I	GACNNNGTC	1 cut(s)	534
XapI	RAATTY	1 cut(s)	656
XceI	RCATGY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XspI	CTAG	4 cut(s)	242, 402, 458, 504
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.