Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Reverse (-)

32617879 .. 32622995

Gene Structure 5117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G350100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCGGGTCTTGTACCTCCAGGTACTACCACGCGAAGCAAGGCTGCGGAGACGAAGCCTATGAACGAGAAACTGGACTACACAAACCTGCCTTGCCCCATACCCTATGAAGAAATCAACCGTGAAGCTCTCATGTCTTTACGGCCAGAATGTTTTGAGGGGATGCGCTTTGATTTCACTAAAGGACTCAATCAGAAGTTCTCCCTTAGCCACAGTGTACTCATGGGACCTATGACAGTTCCTTCTCAGTCTCCTGAAACCATAAAAATCCCTACTGCTCACTATGAGTTTGGTGCAAATTTTATAGACCACCCAAAGTTGATGCTTTTCGGGAGGGTATTAACAGATGGGAGACTTAATGCTAGAGTGAAGTATGACTTGACTGACAATCTCACTTTGAAGGCTAATGCTCAGCTTACAAATGAGCCGCACATGTCTCATGGCATGGCCAGTTTTGATTACAAGGGCTCAGACTACAGATCCCAGATTCAAGTGGGAAATGGGGCCTTATTGCAAGCAAGTTACATCCAGTCGGTGACTCCACATTTCTCTTTGGGTGGTGAAGTATTCTGGGCTGGTCAGCATCAAAAATCAGGCATCGGTTATGCGGCGCGGTTCAACACTGAGAAAATGGTTGCCACAGGACAGGTTGCTAGCACTGGAATGGTTGCTTTGAGCTACGTTCAGAAACTATCCGAAAAGGTTTCACTAGCATCAGACCTCATGTACAACCACACGTCAAGAGATGTCACAGCAAGTGTTGGCTATGATTACGTCCTCAGACAGAGTCGTCTTAGAGGGAAGATTGATTCCAATGGCCGCACGGCTGCTTTTCTTGAAGAGAGATTAAGTATGGGTCTTAAGTTTATTCTTTCTGCAGAGATGGATCACAAGAAGAAAGACTACAAATTCGGGTTTGGGTTGGCGGCAGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

313

Amino Acids

34.56

Weight (kDa)

8.85

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	789
Acc36I	ACCTGC	1 cut(s)	96
AccII	CGCG	2 cut(s)	34, 613
AciI	CCGC	7 cut(s)	5, 47, 428, 608, 613, 820, 926
AclWI	GGATC	2 cut(s)	474, 894
AcoI	YGGCCR	3 cut(s)	143, 447, 817
AcsI	RAATTY	2 cut(s)	298, 908
AfaI	GTAC	4 cut(s)	15, 25, 219, 728
AflII	CTTAAG	1 cut(s)	860
AflIII	ACRYGT	2 cut(s)	432, 735
AgsI	TTSAA	4 cut(s)	400, 491, 619, 839
AjiI	CACGTC	1 cut(s)	738
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	3 cut(s)	128, 415, 678
AluI	AGCT	3 cut(s)	128, 415, 678
Alw26I	GTCTC	4 cut(s)	44, 255, 346, 441
AlwI	GGATC	2 cut(s)	474, 894
AoxI	GGCC	4 cut(s)	143, 447, 504, 817
ApeKI	GCWGC	2 cut(s)	44, 827
ApoI	RAATTY	2 cut(s)	298, 908
ArsI	GACNNNNNNTTYG	2 cut(s)	893, 925
AspLEI	GCGC	2 cut(s)	168, 613
AspS9I	GGNCC	2 cut(s)	227, 504
AsuHPI	GGTGA	2 cut(s)	547, 572
AsuNHI	GCTAGC	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	470
BarI	GAAGNNNNNNTAC	2 cut(s)	887, 919
BbvI	GCAGC	2 cut(s)	31, 814
BccI	CCATC	2 cut(s)	341, 877
BceAI	ACGGC	2 cut(s)	158, 840
BciT130I	CCWGG	1 cut(s)	21
BcoDI	GTCTC	4 cut(s)	44, 255, 346, 441
BfaI	CTAG	3 cut(s)	363, 654, 710
BfmI	CTRYAG	2 cut(s)	475, 876
BfrI	CTTAAG	1 cut(s)	860
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	6 cut(s)	45, 428, 609, 820, 828, 927
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	6 cut(s)	46, 429, 610, 821, 829, 928
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	738
BmgT120I	GGNCC	2 cut(s)	227, 504
BmiI	GGNNCC	2 cut(s)	228, 505
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	5 cut(s)	153, 312, 592, 606, 722
BmtI	GCTAGC	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	206
Bpu1102I	GCTNAGC	1 cut(s)	411
Bse1I	ACTGG	4 cut(s)	78, 450, 529, 664
BseBI	CCWGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	168, 525
BseMII	CTCAG	5 cut(s)	260, 425, 483, 615, 793
BseNI	ACTGG	4 cut(s)	78, 450, 529, 664
BseXI	GCAGC	2 cut(s)	31, 814
Bsh1236I	CGCG	2 cut(s)	34, 613
BshFI	GGCC	4 cut(s)	145, 449, 506, 819
BslFI	GGGAC	1 cut(s)	240
BsmAI	GTCTC	4 cut(s)	44, 255, 346, 441
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	4 cut(s)	145, 449, 506, 819
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp1407I	TGTACA	1 cut(s)	726
Bsp143I	GATC	2 cut(s)	479, 886
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	7 cut(s)	5, 47, 428, 608, 613, 820, 926
BspANI	GGCC	4 cut(s)	145, 449, 506, 819
BspCNI	CTCAG	5 cut(s)	259, 424, 482, 616, 792
BspFNI	CGCG	2 cut(s)	34, 613
BspLI	GGNNCC	2 cut(s)	228, 505
BspMAI	CTGCAG	1 cut(s)	880
BspMI	ACCTGC	1 cut(s)	96
BspOI	GCTAGC	1 cut(s)	657
BspPI	GGATC	2 cut(s)	474, 894
BspTI	CTTAAG	1 cut(s)	860
BsrGI	TGTACA	1 cut(s)	726
BsrI	ACTGG	4 cut(s)	78, 450, 529, 664
BssMI	GATC	2 cut(s)	479, 886
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	122, 215, 238
Bst6I	CTCTTC	1 cut(s)	834
BstAFI	CTTAAG	1 cut(s)	860
BstAUI	TGTACA	1 cut(s)	726
BstC8I	GCNNGC	2 cut(s)	516, 655
BstDEI	CTNAG	7 cut(s)	206, 246, 411, 469, 624, 779, 794
BstF5I	GGATG	2 cut(s)	168, 525
BstFNI	CGCG	2 cut(s)	34, 613
BstHHI	GCGC	2 cut(s)	168, 613
BstKTI	GATC	2 cut(s)	482, 889
BstMAI	GTCTC	4 cut(s)	44, 255, 346, 441
BstMBI	GATC	2 cut(s)	479, 886
BstNI	CCWGG	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	19
BstSFI	CTRYAG	2 cut(s)	475, 876
BstUI	CGCG	2 cut(s)	34, 613
BstV1I	GCAGC	2 cut(s)	31, 814
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BsuRI	GGCC	4 cut(s)	145, 449, 506, 819
BtrI	CACGTC	1 cut(s)	738
BtsCI	GGATG	2 cut(s)	168, 525
BtsIMutI	CAGTG	3 cut(s)	220, 621, 657
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	2 cut(s)	516, 655
CfoI	GCGC	2 cut(s)	168, 613
Cfr13I	GGNCC	2 cut(s)	227, 504
Csp6I	GTAC	4 cut(s)	14, 24, 218, 727
CviAII	CATG	6 cut(s)	133, 223, 433, 440, 445, 724
CviQI	GTAC	4 cut(s)	14, 24, 218, 727
DdeI	CTNAG	7 cut(s)	206, 246, 411, 469, 624, 779, 794
DpnI	GATC	2 cut(s)	481, 888
DpnII	GATC	2 cut(s)	479, 886
DrdI	GACNNNNNNGTC	1 cut(s)	789
DseDI	GACNNNNNNGTC	1 cut(s)	789
EaeI	YGGCCR	3 cut(s)	143, 447, 817
Eam1104I	CTCTTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	834
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	227
EcoO109I	RGGNCCY	2 cut(s)	227, 504
EcoRII	CCWGG	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	470
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	6 cut(s)	136, 226, 436, 443, 448, 727
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	6 cut(s)	132, 222, 432, 439, 444, 723
Fnu4HI	GCNGC	6 cut(s)	45, 428, 609, 820, 828, 927
FokI	GGATG	2 cut(s)	175, 512
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	6 cut(s)	45, 428, 609, 820, 828, 927
FspBI	CTAG	3 cut(s)	363, 654, 710
GlaI	GCGC	2 cut(s)	167, 612
GluI	GCNGC	6 cut(s)	45, 428, 609, 820, 828, 927
HaeIII	GGCC	4 cut(s)	145, 449, 506, 819
HhaI	GCGC	2 cut(s)	168, 613
Hin1II	CATG	6 cut(s)	136, 226, 436, 443, 448, 727
Hin6I	GCGC	2 cut(s)	166, 611
HinP1I	GCGC	2 cut(s)	166, 611
HinfI	GANTC	5 cut(s)	186, 487, 538, 787, 809
HphI	GGTGA	2 cut(s)	547, 572
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	6 cut(s)	195, 472, 687, 697, 718, 782
Hpy188III	TCNNGA	4 cut(s)	254, 331, 741, 836
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	252, 394
HpyCH4III	ACNGT	3 cut(s)	122, 215, 238
HpyCH4IV	ACGT	3 cut(s)	681, 737, 774
HpyCH4V	TGCA	3 cut(s)	296, 514, 878
HpyF3I	CTNAG	7 cut(s)	206, 246, 411, 469, 624, 779, 794
HpySE526I	ACGT	3 cut(s)	681, 737, 774
Hsp92II	CATG	6 cut(s)	136, 226, 436, 443, 448, 727
HspAI	GCGC	2 cut(s)	166, 611
Kzo9I	GATC	2 cut(s)	479, 886
Lsp1109I	GCAGC	2 cut(s)	31, 814
LweI	GCATC	5 cut(s)	153, 312, 592, 606, 722
MaeI	CTAG	3 cut(s)	363, 654, 710
MaeII	ACGT	3 cut(s)	681, 737, 774
MaeIII	GTNAC	3 cut(s)	521, 535, 748
MalI	GATC	2 cut(s)	481, 888
MboI	GATC	2 cut(s)	479, 886
MboII	GAAGA	4 cut(s)	122, 814, 851, 907
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	1 cut(s)	470
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	2 cut(s)	298, 908
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	3 cut(s)	180, 532, 796
MnlI	CCTC	6 cut(s)	27, 151, 327, 731, 788, 791
Mox20I	TGGCCA	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	4 cut(s)	341, 357, 848, 861
MslI	CAYNNNNRTG	1 cut(s)	662
Msp20I	TGGCCA	1 cut(s)	449
MspCI	CTTAAG	1 cut(s)	860
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
MvnI	CGCG	2 cut(s)	34, 613
NdeII	GATC	2 cut(s)	479, 886
NheI	GCTAGC	1 cut(s)	653
NlaIII	CATG	6 cut(s)	136, 226, 436, 443, 448, 727
NlaIV	GGNNCC	2 cut(s)	228, 505
NmuCI	GTSAC	2 cut(s)	535, 748
NspI	RCATGY	1 cut(s)	436
PciI	ACATGT	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	487, 809
PflFI	GACNNNGTC	1 cut(s)	786
PkrI	GCNGC	6 cut(s)	46, 429, 610, 821, 829, 928
PleI	GAGTC	3 cut(s)	180, 532, 795
PpsI	GAGTC	3 cut(s)	180, 532, 795
PpuMI	RGGWCCY	1 cut(s)	227
PscI	ACATGT	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	228, 505
PspPI	GGNCC	2 cut(s)	227, 504
PspPPI	RGGWCCY	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	880
PsuI	RGATCY	1 cut(s)	479
PsyI	GACNNNGTC	1 cut(s)	786
RsaI	GTAC	4 cut(s)	15, 25, 219, 728
RsaNI	GTAC	4 cut(s)	14, 24, 218, 727
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	4 cut(s)	341, 357, 848, 861
SatI	GCNGC	6 cut(s)	45, 428, 609, 820, 828, 927
Sau3AI	GATC	2 cut(s)	479, 886
Sau96I	GGNCC	2 cut(s)	227, 504
SchI	GAGTC	3 cut(s)	180, 532, 796
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	470
SfaNI	GCATC	5 cut(s)	153, 312, 592, 606, 722
SfcI	CTRYAG	2 cut(s)	475, 876
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	860
SmoI	CTYRAG	1 cut(s)	860
Sse9I	AATT	2 cut(s)	298, 908
SsiI	CCGC	7 cut(s)	5, 47, 428, 608, 613, 820, 926
SspMI	CTAG	3 cut(s)	363, 654, 710
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	3 cut(s)	122, 215, 238
TaiI	ACGT	3 cut(s)	684, 740, 777
TasI	AATT	2 cut(s)	298, 908
TatI	WGTACW	2 cut(s)	217, 726
TauI	GCSGC	4 cut(s)	430, 611, 822, 929
TfiI	GAWTC	2 cut(s)	487, 809
Tru1I	TTAA	4 cut(s)	341, 357, 848, 861
Tru9I	TTAA	4 cut(s)	341, 357, 848, 861
TscAI	CASTG	3 cut(s)	220, 628, 664
TseFI	GTSAC	2 cut(s)	535, 748
TseI	GCWGC	2 cut(s)	44, 827
Tsp45I	GTSAC	2 cut(s)	535, 748
TspDTI	ATGAA	2 cut(s)	77, 123
TspRI	CASTG	3 cut(s)	220, 628, 664
Tth111I	GACNNNGTC	1 cut(s)	786
Vha464I	CTTAAG	1 cut(s)	860
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	2 cut(s)	298, 908
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	3 cut(s)	363, 654, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.