Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Forward (+)

2310414 .. 2317106

Gene Structure 6693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGGGCCTCGTTCCTCCTCCTCCTCCAACCGCCGCGGCTGATACTATTCCGAAGCCGAAGGAGGATGAGAAAGTGGATTACTTGAATCTTCCTTGCCCTATTCCCTATGAGGAGATCCACCGTGAAGCTCTCATGTCTTTAAAGCCGGAACTGTTTGAGGGGATGCGCTTTGATTTCACCAAAGGACTCAATCAGAGGTTCTCACTCAGTCACAGCGTGTTCATGGGACCTACCGAGGTTCCTTCACAATCTCCCGAAACTATTAAAATTCCCACTGCTCACTATGAGTTTGGTGCCAACTTTATAGATCCAAAGTTGATGCTTTTTGGGAGAATCATGACTGATGGGAGGCTTAATGCAAGAGTAAAGTGTGATTTATCTGAGAATCTTACTTTGAAGGCCAATTCTCAGCTTACCAACGAGCCTCACATGTCGCATGGCATGGTCAATTTTGATTACAAGGGAAAAGATTACAGGTCACAGTTTCAACTAGGAAATGGTGCACTGTTTGGAGCAAACTACATTCAGAGTGTGACCCCCCATCTCGCTTTGGGTGGTGAAGTGTTCTGGGCCGGTCAGCATCGGAAGTCTGGTATTGGCTATGCTGCTCGGTATAACACAGAAAAGATGGTTGCCACAGGGCAAGTCGCTAGCACTGGAATGGTTGCTCTTAGCTATGTACAAAAGGTTTCTGATAAGGTTTCTCTCGCATCAGATTTCATGTACAACTACATGTCAAGAGATGTCACAGCTAGTTTTGGTTATGATTACATTCTTCGACAGTGCCGTCTTAGAGGAAAGATTGATTCCAATGGCACCGTAGCTGCATTTTTGGAAGAGCGACTAAATATGGGTCTTAATTTTGTTCTTTCTGCAGAGATTGATCACAGAAAGAAAGACTACAAATTCGGGTTTGGGTTGACTGTGGGAGAACTCTCTCTTTATTTTTCCATTCGAGTTGAACTAGAGATCCCTGTATACTTAATCTCGGGTAACATTATCGCAGGGCGGCATCGGTTGAGCCAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

345

Amino Acids

38.5

Weight (kDa)

7.72

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	33 - 305	3e-67	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	789
AccB1I	GGYRCC	2 cut(s)	296, 818
AccI	GTMKAC	1 cut(s)	981
AccII	CGCG	1 cut(s)	38
AciI	CCGC	5 cut(s)	5, 33, 36, 38, 1012
AclWI	GGATC	3 cut(s)	112, 305, 967
AcsI	RAATTY	2 cut(s)	270, 908
AdeI	CACNNNGTG	1 cut(s)	220
AfaI	GTAC	2 cut(s)	684, 728
AflIII	ACRYGT	2 cut(s)	432, 735
AgsI	TTSAA	4 cut(s)	88, 400, 491, 965
AloI	GAACNNNNNNTCC	2 cut(s)	957, 989
AluBI	AGCT	5 cut(s)	131, 415, 678, 755, 827
AluI	AGCT	5 cut(s)	131, 415, 678, 755, 827
Alw21I	GWGCWC	1 cut(s)	508
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	3 cut(s)	112, 305, 967
Ama87I	CYCGRG	1 cut(s)	991
AoxI	GGCC	3 cut(s)	7, 402, 573
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	2 cut(s)	608, 827
ApoI	RAATTY	2 cut(s)	270, 908
ArsI	GACNNNNNNTTYG	2 cut(s)	893, 925
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	3 cut(s)	7, 230, 573
AsuHPI	GGTGA	2 cut(s)	172, 572
AsuNHI	GCTAGC	1 cut(s)	653
AvaI	CYCGRG	1 cut(s)	991
AvaII	GGWCC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	508
BanI	GGYRCC	2 cut(s)	296, 818
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	595, 814
BccI	CCATC	3 cut(s)	341, 552, 625
BceAI	ACGGC	1 cut(s)	774
BclI	TGATCA	1 cut(s)	886
BfaI	CTAG	4 cut(s)	494, 654, 756, 968
BfmI	CTRYAG	1 cut(s)	876
BisI	GCNGC	5 cut(s)	36, 39, 609, 828, 1013
BlsI	GCNGC	5 cut(s)	37, 40, 610, 829, 1014
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	991
BmgT120I	GGNCC	3 cut(s)	7, 230, 573
BmiI	GGNNCC	4 cut(s)	231, 243, 298, 820
BmsI	GCATC	5 cut(s)	156, 312, 592, 722, 1024
BmtI	GCTAGC	1 cut(s)	657
BsaJI	CCNNGG	2 cut(s)	36, 237
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	2 cut(s)	664, 1027
BseDI	CCNNGG	2 cut(s)	36, 237
BseGI	GGATG	2 cut(s)	73, 171
BseMII	CTCAG	3 cut(s)	223, 375, 425
BseNI	ACTGG	2 cut(s)	664, 1027
BseRI	GAGGAG	4 cut(s)	9, 12, 15, 128
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	2 cut(s)	595, 814
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	9, 404, 575
BshNI	GGYRCC	2 cut(s)	296, 818
BsiHKAI	GWGCWC	1 cut(s)	508
BsiHKCI	CYCGRG	1 cut(s)	991
BsiSI	CCGG	2 cut(s)	149, 576
BslFI	GGGAC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	3 cut(s)	9, 404, 575
BsoBI	CYCGRG	1 cut(s)	991
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp1407I	TGTACA	2 cut(s)	682, 726
Bsp143I	GATC	4 cut(s)	117, 310, 886, 972
BspACI	CCGC	5 cut(s)	5, 33, 36, 38, 1012
BspANI	GGCC	3 cut(s)	9, 404, 575
BspCNI	CTCAG	3 cut(s)	222, 376, 424
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	4 cut(s)	231, 243, 298, 820
BspMAI	CTGCAG	1 cut(s)	880
BspOI	GCTAGC	1 cut(s)	657
BspPI	GGATC	3 cut(s)	112, 305, 967
BspQI	GCTCTTC	1 cut(s)	834
BspT107I	GGYRCC	2 cut(s)	296, 818
BsrFI	RCCGGY	1 cut(s)	575
BsrGI	TGTACA	2 cut(s)	682, 726
BsrI	ACTGG	2 cut(s)	664, 1027
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	2 cut(s)	36, 237
BssMI	GATC	4 cut(s)	117, 310, 886, 972
BssNAI	GTATAC	1 cut(s)	982
Bst1107I	GTATAC	1 cut(s)	982
Bst4CI	ACNGT	7 cut(s)	125, 156, 486, 510, 786, 823, 928
Bst6I	CTCTTC	1 cut(s)	834
BstAUI	TGTACA	2 cut(s)	682, 726
BstC8I	GCNNGC	2 cut(s)	7, 655
BstDEI	CTNAG	5 cut(s)	209, 384, 411, 674, 794
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	73, 171
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	4 cut(s)	120, 313, 889, 975
BstMBI	GATC	4 cut(s)	117, 310, 886, 972
BstNSI	RCATGY	2 cut(s)	436, 739
BstSFI	CTRYAG	1 cut(s)	876
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	595, 814
BstX2I	RGATCY	3 cut(s)	117, 310, 972
BstYI	RGATCY	3 cut(s)	117, 310, 972
BstZ17I	GTATAC	1 cut(s)	982
BsuRI	GGCC	3 cut(s)	9, 404, 575
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	73, 171
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	4 cut(s)	276, 506, 657, 791
Cac8I	GCNNGC	2 cut(s)	7, 655
CciI	TCATGA	1 cut(s)	339
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	3 cut(s)	7, 230, 573
Cfr42I	CCGCGG	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	683, 727
CviAII	CATG	8 cut(s)	136, 226, 340, 433, 440, 445, 724, 736
CviQI	GTAC	2 cut(s)	683, 727
DdeI	CTNAG	5 cut(s)	209, 384, 411, 674, 794
DpnI	GATC	4 cut(s)	119, 312, 888, 974
DpnII	GATC	4 cut(s)	117, 310, 886, 972
DraI	TTTAAA	1 cut(s)	144
DraIII	CACNNNGTG	1 cut(s)	220
DrdI	GACNNNNNNGTC	1 cut(s)	789
DseDI	GACNNNNNNGTC	1 cut(s)	789
Eam1104I	CTCTTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	834
Eco47I	GGWCC	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	991
EcoO109I	RGGNCCY	1 cut(s)	230
FaeI	CATG	8 cut(s)	139, 229, 343, 436, 443, 448, 727, 739
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	8 cut(s)	135, 225, 339, 432, 439, 444, 723, 735
FbaI	TGATCA	1 cut(s)	886
FblI	GTMKAC	1 cut(s)	981
Fnu4HI	GCNGC	5 cut(s)	36, 39, 609, 828, 1013
FokI	GGATG	2 cut(s)	80, 178
Fsp4HI	GCNGC	5 cut(s)	36, 39, 609, 828, 1013
FspBI	CTAG	4 cut(s)	494, 654, 756, 968
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	5 cut(s)	36, 39, 609, 828, 1013
HaeIII	GGCC	3 cut(s)	9, 404, 575
HapII	CCGG	2 cut(s)	149, 576
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	8 cut(s)	139, 229, 343, 436, 443, 448, 727, 739
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	924
HindII	GTYRAC	1 cut(s)	924
HinfI	GANTC	5 cut(s)	88, 189, 336, 388, 809
HpaII	CCGG	2 cut(s)	149, 576
HphI	GGTGA	2 cut(s)	172, 572
Hpy166II	GTNNAC	3 cut(s)	506, 924, 982
Hpy188I	TCNGA	7 cut(s)	54, 198, 385, 531, 588, 697, 718
Hpy188III	TCNNGA	3 cut(s)	257, 340, 741
Hpy8I	GTNNAC	3 cut(s)	506, 924, 982
HpyAV	CCTTC	3 cut(s)	55, 255, 394
HpyCH4III	ACNGT	7 cut(s)	125, 156, 486, 510, 786, 823, 928
HpyCH4V	TGCA	4 cut(s)	362, 506, 830, 878
HpyF3I	CTNAG	5 cut(s)	209, 384, 411, 674, 794
Hsp92II	CATG	8 cut(s)	139, 229, 343, 436, 443, 448, 727, 739
HspAI	GCGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	886
KspI	CCGCGG	1 cut(s)	39
Kzo9I	GATC	4 cut(s)	117, 310, 886, 972
LguI	GCTCTTC	1 cut(s)	834
LmnI	GCTCC	1 cut(s)	515
LpnPI	CCDG	9 cut(s)	162, 463, 556, 579, 589, 627, 645, 990, 993
Lsp1109I	GCAGC	2 cut(s)	595, 814
LweI	GCATC	5 cut(s)	156, 312, 592, 722, 1024
MaeI	CTAG	4 cut(s)	494, 654, 756, 968
MaeIII	GTNAC	5 cut(s)	212, 480, 535, 748, 995
MalI	GATC	4 cut(s)	119, 312, 888, 974
MboI	GATC	4 cut(s)	117, 310, 886, 972
MboII	GAAGA	3 cut(s)	83, 770, 851
MflI	RGATCY	3 cut(s)	117, 310, 972
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	5 cut(s)	270, 406, 451, 862, 908
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	53
MseI	TTAA	5 cut(s)	143, 267, 357, 861, 986
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	2 cut(s)	149, 576
MvnI	CGCG	1 cut(s)	38
NdeII	GATC	4 cut(s)	117, 310, 886, 972
NheI	GCTAGC	1 cut(s)	653
NlaIII	CATG	8 cut(s)	139, 229, 343, 436, 443, 448, 727, 739
NlaIV	GGNNCC	4 cut(s)	231, 243, 298, 820
NmuCI	GTSAC	4 cut(s)	212, 480, 535, 748
NspI	RCATGY	2 cut(s)	436, 739
PagI	TCATGA	1 cut(s)	339
PciI	ACATGT	2 cut(s)	432, 735
PciSI	GCTCTTC	1 cut(s)	834
PcsI	WCGNNNNNNNCGW	1 cut(s)	787
PfeI	GAWTC	4 cut(s)	88, 336, 388, 809
PkrI	GCNGC	5 cut(s)	37, 40, 610, 829, 1014
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PpuMI	RGGWCCY	1 cut(s)	230
PscI	ACATGT	2 cut(s)	432, 735
Psp5II	RGGWCCY	1 cut(s)	230
PspN4I	GGNNCC	4 cut(s)	231, 243, 298, 820
PspPI	GGNCC	3 cut(s)	7, 230, 573
PspPPI	RGGWCCY	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	880
PsuI	RGATCY	3 cut(s)	117, 310, 972
RsaI	GTAC	2 cut(s)	684, 728
RsaNI	GTAC	2 cut(s)	683, 727
RseI	CAYNNNNRTG	1 cut(s)	662
SacII	CCGCGG	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	834
SaqAI	TTAA	5 cut(s)	143, 267, 357, 861, 986
SatI	GCNGC	5 cut(s)	36, 39, 609, 828, 1013
Sau3AI	GATC	4 cut(s)	117, 310, 886, 972
Sau96I	GGNCC	3 cut(s)	7, 230, 573
SchI	GAGTC	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	508
SfaNI	GCATC	5 cut(s)	156, 312, 592, 722, 1024
SfcI	CTRYAG	1 cut(s)	876
Sfr303I	CCGCGG	1 cut(s)	39
SgrBI	CCGCGG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	662
Sse9I	AATT	5 cut(s)	270, 406, 451, 862, 908
SsiI	CCGC	5 cut(s)	5, 33, 36, 38, 1012
SspMI	CTAG	4 cut(s)	494, 654, 756, 968
TaaI	ACNGT	7 cut(s)	125, 156, 486, 510, 786, 823, 928
TaqI	TCGA	2 cut(s)	781, 958
TasI	AATT	5 cut(s)	270, 406, 451, 862, 908
TatI	WGTACW	2 cut(s)	682, 726
TauI	GCSGC	3 cut(s)	38, 41, 1015
TfiI	GAWTC	4 cut(s)	88, 336, 388, 809
Tru1I	TTAA	5 cut(s)	143, 267, 357, 861, 986
Tru9I	TTAA	5 cut(s)	143, 267, 357, 861, 986
TscAI	CASTG	4 cut(s)	283, 513, 664, 791
TseFI	GTSAC	4 cut(s)	212, 480, 535, 748
TseI	GCWGC	2 cut(s)	608, 827
Tsp45I	GTSAC	4 cut(s)	212, 480, 535, 748
TspDTI	ATGAA	2 cut(s)	214, 712
TspRI	CASTG	4 cut(s)	283, 513, 664, 791
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	2 cut(s)	270, 908
XceI	RCATGY	2 cut(s)	436, 739
XmiI	GTMKAC	1 cut(s)	981
XspI	CTAG	4 cut(s)	494, 654, 756, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.