Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Reverse (-)

29705346 .. 29711144

Gene Structure 5799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG148300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCGGGCCTCGTTCCTCCTCCACCCACTGCTCCTGATACTCCCAAACAGAATGAGAGAGTCGATTACCTCAATCTCCCTTGCCCTATTCCCTACGACGAGATCTCCCGCGAAGCTTACATGTCTTTAAAGCCAGAGCTTTTCGAGGGGATGCGAATCGATTTTACCAAAGGTCTCAATCAGAAGTTCTCACTCAGTCACAGTGTGACCATGGGACCTACAGAGGTTCCTTCCCAATCTACTGAAACTATTAAAATTCCCACTGCTCAGTATGAGTTTGGTGCCAATTTTTTGGACCCAAAGCTGATGCTTGTCGGGAGAGTATTGACTGATGGGAGGCTCAATGCGAGAGTAAAGTGTGATTTAACCGAGAATCTTTCTTTGAAGGCTAATTCTCAGCTTACCAACGAGCCACACATGTCACATGGCATGGCTAGTTTTGATTACAAGGGTAAAGATTTCCGGTCACAGTTTCAACTAGGGAATGGTGCATTGTTTGGTGCAAACTATATTCAGAGTGTAACCCCCAATCTGTCCGTGGGTGGTGAAGTGTTTTGGGCTGGTCAGCATCGGAAGTCTGGTATTGGCTATGCTGCTCGATACAATACAGACAAGATGGTTGCCACAGGGCAGGTTGCTAGTACTGGAGTTGTTGCTATGAGCTATGTTCAGAAGGTGTCTGATAAGGTTTCTCTAGCATCAGATTTCATGTACAACTACTTATCAAGAGACGTGACAGCTAGCTTCGGTTATGATTACATTCTGCGACAGTGTCGTCTTAGAGGAAAGATTGATTCCAATGGAGTAGCTGCTGCCTTTTTGGAAGAGCGACTAAATATGGGTCTTAATTTTATTCTTTCTGCAGAGATTGATCATAGAAAGAAAGACTACAAATTTGGGTTTGGATTGACTGTTGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

307

Amino Acids

33.99

Weight (kDa)

7.68

Isoelectric Point (pI)

28.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	28 - 300	3.8e-65	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	774
Acc36I	ACCTGC	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	5, 109
AcsI	RAATTY	2 cut(s)	255, 893
AdeI	CACNNNGTG	1 cut(s)	205
AfaI	GTAC	2 cut(s)	643, 713
AflIII	ACRYGT	2 cut(s)	120, 417
AgsI	TTSAA	2 cut(s)	385, 476
AjiI	CACGTC	1 cut(s)	733
AluBI	AGCT	8 cut(s)	116, 139, 304, 400, 663, 740, 744, 809
AluI	AGCT	8 cut(s)	116, 139, 304, 400, 663, 740, 744, 809
Alw26I	GTCTC	2 cut(s)	179, 723
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	3 cut(s)	593, 809, 812
ApoI	RAATTY	2 cut(s)	255, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
AspS9I	GGNCC	3 cut(s)	7, 215, 295
AsuHPI	GGTGA	1 cut(s)	557
AsuNHI	GCTAGC	1 cut(s)	740
AvaII	GGWCC	2 cut(s)	215, 295
BanI	GGYRCC	1 cut(s)	281
BbvI	GCAGC	3 cut(s)	580, 796, 799
BccI	CCATC	2 cut(s)	326, 610
BclI	TGATCA	1 cut(s)	871
BcoDI	GTCTC	2 cut(s)	179, 723
BfaI	CTAG	5 cut(s)	435, 479, 639, 695, 741
BfmI	CTRYAG	2 cut(s)	219, 861
BfuAI	ACCTGC	1 cut(s)	622
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	3 cut(s)	594, 810, 813
BlsI	GCNGC	3 cut(s)	595, 811, 814
BmcAI	AGTACT	1 cut(s)	643
Bme18I	GGWCC	2 cut(s)	215, 295
BmgBI	CACGTC	1 cut(s)	733
BmgT120I	GGNCC	3 cut(s)	7, 215, 295
BmiI	GGNNCC	4 cut(s)	216, 228, 283, 297
BmsI	GCATC	4 cut(s)	141, 297, 577, 707
BmtI	GCTAGC	1 cut(s)	744
BpmI	CTGGAG	1 cut(s)	666
Bsa29I	ATCGAT	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	210, 537
BsaWI	WCCGGW	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	1 cut(s)	649
Bse8I	GATNNNNATC	1 cut(s)	155
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	210, 537
BseGI	GGATG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	155
BseMII	CTCAG	3 cut(s)	208, 281, 410
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	580, 796, 799
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	228
BsmAI	GTCTC	2 cut(s)	179, 723
BsmBI	CGTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	9
Bso31I	GGTCTC	1 cut(s)	179
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	2 cut(s)	102, 871
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	2 cut(s)	5, 109
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	3 cut(s)	207, 280, 409
BspDI	ATCGAT	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	4 cut(s)	216, 228, 283, 297
BspMAI	CTGCAG	1 cut(s)	865
BspMI	ACCTGC	1 cut(s)	622
BspOI	GCTAGC	1 cut(s)	744
BspQI	GCTCTTC	1 cut(s)	819
BspT107I	GGYRCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	2 cut(s)	210, 537
BssMI	GATC	2 cut(s)	102, 871
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	4 cut(s)	203, 471, 771, 913
Bst6I	CTCTTC	1 cut(s)	819
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	7, 742
BstDEI	CTNAG	4 cut(s)	194, 267, 396, 779
BstDSI	CCRYGG	2 cut(s)	210, 537
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	105, 874
BstMAI	GTCTC	2 cut(s)	179, 723
BstMBI	GATC	2 cut(s)	102, 871
BstNSI	RCATGY	2 cut(s)	124, 421
BstSFI	CTRYAG	2 cut(s)	219, 861
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	580, 796, 799
BstX2I	RGATCY	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	9
BsuTUI	ATCGAT	1 cut(s)	159
BtgI	CCRYGG	2 cut(s)	210, 537
BtrI	CACGTC	1 cut(s)	733
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	2 cut(s)	27, 261
BtsIMutI	CAGTG	4 cut(s)	27, 208, 261, 776
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	2 cut(s)	7, 742
Cfr13I	GGNCC	3 cut(s)	7, 215, 295
ClaI	ATCGAT	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	642, 712
CviAII	CATG	6 cut(s)	121, 211, 418, 425, 430, 709
CviQI	GTAC	2 cut(s)	642, 712
DdeI	CTNAG	4 cut(s)	194, 267, 396, 779
DpnI	GATC	2 cut(s)	104, 873
DpnII	GATC	2 cut(s)	102, 871
DraI	TTTAAA	1 cut(s)	129
DraIII	CACNNNGTG	1 cut(s)	205
DrdI	GACNNNNNNGTC	1 cut(s)	774
DseDI	GACNNNNNNGTC	1 cut(s)	774
Eam1104I	CTCTTC	1 cut(s)	819
EarI	CTCTTC	1 cut(s)	819
Eco130I	CCWWGG	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	215, 295
EcoO109I	RGGNCCY	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	723
FaeI	CATG	6 cut(s)	124, 214, 421, 428, 433, 712
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	6 cut(s)	120, 210, 417, 424, 429, 708
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	871
Fnu4HI	GCNGC	3 cut(s)	594, 810, 813
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	3 cut(s)	594, 810, 813
FspBI	CTAG	5 cut(s)	435, 479, 639, 695, 741
GluI	GCNGC	3 cut(s)	594, 810, 813
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	463
Hin1II	CATG	6 cut(s)	124, 214, 421, 428, 433, 712
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	4 cut(s)	60, 156, 373, 794
HpaII	CCGG	1 cut(s)	463
HphI	GGTGA	1 cut(s)	557
Hpy188I	TCNGA	6 cut(s)	183, 516, 573, 672, 682, 703
Hpy188III	TCNNGA	3 cut(s)	35, 316, 726
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	240, 379, 667
HpyCH4III	ACNGT	4 cut(s)	203, 471, 771, 913
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	3 cut(s)	491, 503, 863
HpyF3I	CTNAG	4 cut(s)	194, 267, 396, 779
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	6 cut(s)	124, 214, 421, 428, 433, 712
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	2 cut(s)	102, 871
LguI	GCTCTTC	1 cut(s)	819
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	8 cut(s)	48, 147, 476, 546, 564, 612, 617, 630
Lsp1109I	GCAGC	3 cut(s)	580, 796, 799
LweI	GCATC	4 cut(s)	141, 297, 577, 707
MaeI	CTAG	5 cut(s)	435, 479, 639, 695, 741
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	6 cut(s)	197, 205, 420, 465, 520, 733
MalI	GATC	2 cut(s)	104, 873
MboI	GATC	2 cut(s)	102, 871
MboII	GAAGA	1 cut(s)	836
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	5 cut(s)	255, 286, 391, 847, 893
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	895
MnlI	CCTC	8 cut(s)	20, 27, 30, 80, 139, 217, 330, 776
MseI	TTAA	4 cut(s)	128, 252, 365, 846
MspI	CCGG	1 cut(s)	463
MvnI	CGCG	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	102, 871
NheI	GCTAGC	1 cut(s)	740
NlaIII	CATG	6 cut(s)	124, 214, 421, 428, 433, 712
NlaIV	GGNNCC	4 cut(s)	216, 228, 283, 297
NmuCI	GTSAC	5 cut(s)	197, 205, 420, 465, 733
NspI	RCATGY	2 cut(s)	124, 421
PciI	ACATGT	2 cut(s)	120, 417
PciSI	GCTCTTC	1 cut(s)	819
PfeI	GAWTC	3 cut(s)	156, 373, 794
PflFI	GACNNNGTC	1 cut(s)	771
PkrI	GCNGC	3 cut(s)	595, 811, 814
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	215
PscI	ACATGT	2 cut(s)	120, 417
Psp5II	RGGWCCY	1 cut(s)	215
PspN4I	GGNNCC	4 cut(s)	216, 228, 283, 297
PspPI	GGNCC	3 cut(s)	7, 215, 295
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	865
PsuI	RGATCY	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	771
RsaI	GTAC	2 cut(s)	643, 713
RsaNI	GTAC	2 cut(s)	642, 712
SapI	GCTCTTC	1 cut(s)	819
SaqAI	TTAA	4 cut(s)	128, 252, 365, 846
SatI	GCNGC	3 cut(s)	594, 810, 813
Sau3AI	GATC	2 cut(s)	102, 871
Sau96I	GGNCC	3 cut(s)	7, 215, 295
ScaI	AGTACT	1 cut(s)	643
SchI	GAGTC	1 cut(s)	69
SfaNI	GCATC	4 cut(s)	141, 297, 577, 707
SfcI	CTRYAG	2 cut(s)	219, 861
SinI	GGWCC	2 cut(s)	215, 295
Sse9I	AATT	5 cut(s)	255, 286, 391, 847, 893
SsiI	CCGC	2 cut(s)	5, 109
SspMI	CTAG	5 cut(s)	435, 479, 639, 695, 741
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	4 cut(s)	203, 471, 771, 913
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	4 cut(s)	63, 144, 159, 598
TasI	AATT	5 cut(s)	255, 286, 391, 847, 893
TatI	WGTACW	2 cut(s)	641, 711
TfiI	GAWTC	3 cut(s)	156, 373, 794
Tru1I	TTAA	4 cut(s)	128, 252, 365, 846
Tru9I	TTAA	4 cut(s)	128, 252, 365, 846
TscAI	CASTG	4 cut(s)	34, 208, 268, 776
TseFI	GTSAC	5 cut(s)	197, 205, 420, 465, 733
TseI	GCWGC	3 cut(s)	593, 809, 812
Tsp45I	GTSAC	5 cut(s)	197, 205, 420, 465, 733
TspDTI	ATGAA	1 cut(s)	697
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	4 cut(s)	34, 208, 268, 776
Tth111I	GACNNNGTC	1 cut(s)	771
VpaK11BI	GGWCC	2 cut(s)	215, 295
XapI	RAATTY	2 cut(s)	255, 893
XceI	RCATGY	2 cut(s)	124, 421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XspI	CTAG	5 cut(s)	435, 479, 639, 695, 741
ZrmI	AGTACT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.