Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Forward (+)

15662627 .. 15669808

Gene Structure 7182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G180200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCGGCCCTTGTTCCTCCTCCTCCTCCAACCACTGCGGCTGATACTACCCAGAAGCCGAAAGAGGATGAGAAAGTTGATTACTTTAATCTTCCTTGTCCTATCCCCTACGAGGAGATCCATCGTGAAGCTCTCATGTCTTTAAAGCCAGAACTTTTTGAGGGGATGCGCTTCGATTTTACCAAAGGACTCAACCAGAGATTCTCACTCAGTCACAGCGTGTTCATGGGACCTATGGAGGTTCCTTCACAATCTCCGGAAACTATTAAAATTCCTACTGCTCACTATGAGTTTGGTGCCAATTTTATAGATCCAAAGTTGATGCTTTTTGGGAGAATAATGACTGATGGGAGGCTTAATGCAAGAGTAAAGTGTGATTTATCTGAGAATCTTACTTTGAAGGCTAATTCTCAGCTTACTAATGAGCCACACATGTCACATGGCATGGTCAATTTTGATTACAAGGGCAAAGATTACAGGTCACAATTTCAGTTAGGCAATGGTGCATTATTTGGAGCAAACTACATTCAGAGCGTGACTCCCCATCTGTCTTTGGGTGGTGAAGTATTTTGGGCTGGTCAGCATCGGAAGTCTGGTATTGGCTATGCTGCTCGATACAACACTGACAAGATGGTTGCCACAGGGCAAGTCGCTAGCACTGGAATGGTTGCTCTGAGCTATGTACAAAAAGTTTCTGAGAAGGTTTCTCTAGCATCGGATTTCATGTACAACTACATGTCACGAGACGTCACAGCTAGTTTTGGTTATGATTACATTCTTCGACAGTGCCGTCTTAGAGGAAAGATTGATTCCAATGGCACCGTGGCTGCATTTTTGGAAGAGCGACTAAATATGGGTCTTAATTTTGTCCTTTCTGCAGAGATTGATCACAGAAAGAAAGACTACAAATTTGGGTTTGGATTGACTGTTGGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

313

Amino Acids

34.95

Weight (kDa)

7.09

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	789
AatII	GACGTC	1 cut(s)	750
AccB1I	GGYRCC	2 cut(s)	296, 818
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	2 cut(s)	5, 38
AclWI	GGATC	2 cut(s)	112, 305
AcsI	RAATTY	2 cut(s)	270, 908
AcyI	GRCGYC	1 cut(s)	747
AdeI	CACNNNGTG	1 cut(s)	220
AfaI	GTAC	2 cut(s)	684, 728
AfiI	CCNNNNNNNGG	1 cut(s)	112
AflIII	ACRYGT	2 cut(s)	432, 735
AgsI	TTSAA	1 cut(s)	400
AluBI	AGCT	4 cut(s)	131, 415, 678, 755
AluI	AGCT	4 cut(s)	131, 415, 678, 755
Alw26I	GTCTC	1 cut(s)	738
AlwI	GGATC	2 cut(s)	112, 305
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	608, 827
ApoI	RAATTY	2 cut(s)	270, 908
ArsI	GACNNNNNNTTYG	2 cut(s)	893, 925
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	7, 230
AsuHPI	GGTGA	1 cut(s)	572
AsuNHI	GCTAGC	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	230
BanI	GGYRCC	2 cut(s)	296, 818
BauI	CACGAG	1 cut(s)	741
BbvI	GCAGC	2 cut(s)	595, 814
BccI	CCATC	4 cut(s)	129, 341, 552, 625
BceAI	ACGGC	1 cut(s)	774
BclI	TGATCA	1 cut(s)	886
BcoDI	GTCTC	1 cut(s)	738
BfaI	CTAG	3 cut(s)	654, 710, 756
BfmI	CTRYAG	1 cut(s)	876
BisI	GCNGC	4 cut(s)	6, 39, 609, 828
BlsI	GCNGC	4 cut(s)	7, 40, 610, 829
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	7, 230
BmiI	GGNNCC	4 cut(s)	231, 243, 298, 820
BmsI	GCATC	4 cut(s)	156, 312, 592, 722
BmtI	GCTAGC	1 cut(s)	657
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
BsaHI	GRCGYC	1 cut(s)	747
BsaJI	CCNNGG	1 cut(s)	822
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	664
Bse3DI	GCAATG	1 cut(s)	505
BseAI	TCCGGA	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	822
BseGI	GGATG	2 cut(s)	73, 171
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	5 cut(s)	223, 375, 425, 665, 687
BseNI	ACTGG	1 cut(s)	664
BseRI	GAGGAG	4 cut(s)	9, 12, 15, 128
BseXI	GCAGC	2 cut(s)	595, 814
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	2 cut(s)	296, 818
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	738
BsmBI	CGTCTC	1 cut(s)	738
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	256
Bsp1407I	TGTACA	2 cut(s)	682, 726
Bsp143I	GATC	3 cut(s)	117, 310, 886
BspACI	CCGC	2 cut(s)	5, 38
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	5 cut(s)	222, 376, 424, 666, 688
BspEI	TCCGGA	1 cut(s)	256
BspLI	GGNNCC	4 cut(s)	231, 243, 298, 820
BspMAI	CTGCAG	1 cut(s)	880
BspOI	GCTAGC	1 cut(s)	657
BspPI	GGATC	2 cut(s)	112, 305
BspQI	GCTCTTC	1 cut(s)	834
BspT107I	GGYRCC	2 cut(s)	296, 818
BsrDI	GCAATG	1 cut(s)	505
BsrGI	TGTACA	2 cut(s)	682, 726
BsrI	ACTGG	1 cut(s)	664
BssECI	CCNNGG	1 cut(s)	822
BssMI	GATC	3 cut(s)	117, 310, 886
BssNI	GRCGYC	1 cut(s)	747
BssSI	CACGAG	1 cut(s)	741
Bst2BI	CACGAG	1 cut(s)	741
Bst4CI	ACNGT	3 cut(s)	786, 823, 928
Bst6I	CTCTTC	1 cut(s)	834
BstACI	GRCGYC	1 cut(s)	747
BstAUI	TGTACA	2 cut(s)	682, 726
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	6 cut(s)	209, 384, 411, 674, 696, 794
BstDSI	CCRYGG	1 cut(s)	822
BstF5I	GGATG	2 cut(s)	73, 171
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	3 cut(s)	120, 313, 889
BstMAI	GTCTC	1 cut(s)	738
BstMBI	GATC	3 cut(s)	117, 310, 886
BstNSI	RCATGY	2 cut(s)	436, 739
BstSFI	CTRYAG	1 cut(s)	876
BstV1I	GCAGC	2 cut(s)	595, 814
BstX2I	RGATCY	2 cut(s)	117, 310
BstYI	RGATCY	2 cut(s)	117, 310
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	822
BtsCI	GGATG	2 cut(s)	73, 171
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	4 cut(s)	33, 621, 657, 791
Cac8I	GCNNGC	1 cut(s)	655
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	7, 230
Csp6I	GTAC	2 cut(s)	683, 727
CviAII	CATG	7 cut(s)	136, 226, 433, 440, 445, 724, 736
CviQI	GTAC	2 cut(s)	683, 727
DdeI	CTNAG	6 cut(s)	209, 384, 411, 674, 696, 794
DpnI	GATC	3 cut(s)	119, 312, 888
DpnII	GATC	3 cut(s)	117, 310, 886
DraI	TTTAAA	1 cut(s)	144
DraIII	CACNNNGTG	1 cut(s)	220
DrdI	GACNNNNNNGTC	1 cut(s)	789
DseDI	GACNNNNNNGTC	1 cut(s)	789
Eam1104I	CTCTTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	834
Eco47I	GGWCC	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	738
FaeI	CATG	7 cut(s)	139, 229, 436, 443, 448, 727, 739
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	7 cut(s)	135, 225, 432, 439, 444, 723, 735
FbaI	TGATCA	1 cut(s)	886
Fnu4HI	GCNGC	4 cut(s)	6, 39, 609, 828
FokI	GGATG	2 cut(s)	80, 178
Fsp4HI	GCNGC	4 cut(s)	6, 39, 609, 828
FspBI	CTAG	3 cut(s)	654, 710, 756
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	4 cut(s)	6, 39, 609, 828
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	257
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	747
Hin1II	CATG	7 cut(s)	139, 229, 436, 443, 448, 727, 739
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	5 cut(s)	189, 201, 388, 538, 809
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	572
Hpy188I	TCNGA	6 cut(s)	385, 531, 588, 675, 697, 718
Hpy188III	TCNNGA	3 cut(s)	125, 257, 741
HpyAV	CCTTC	3 cut(s)	255, 394, 694
HpyCH4III	ACNGT	3 cut(s)	786, 823, 928
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	4 cut(s)	362, 506, 830, 878
HpyF3I	CTNAG	6 cut(s)	209, 384, 411, 674, 696, 794
HpySE526I	ACGT	1 cut(s)	747
Hsp92I	GRCGYC	1 cut(s)	747
Hsp92II	CATG	7 cut(s)	139, 229, 436, 443, 448, 727, 739
HspAI	GCGC	1 cut(s)	169
Kpn2I	TCCGGA	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	886
Kzo9I	GATC	3 cut(s)	117, 310, 886
LguI	GCTCTTC	1 cut(s)	834
LmnI	GCTCC	1 cut(s)	515
LpnPI	CCDG	9 cut(s)	65, 162, 209, 270, 463, 561, 579, 627, 645
Lsp1109I	GCAGC	2 cut(s)	595, 814
LweI	GCATC	4 cut(s)	156, 312, 592, 722
MaeI	CTAG	3 cut(s)	654, 710, 756
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	6 cut(s)	212, 435, 480, 535, 738, 748
MalI	GATC	3 cut(s)	119, 312, 888
MboI	GATC	3 cut(s)	117, 310, 886
MboII	GAAGA	3 cut(s)	83, 770, 851
MflI	RGATCY	2 cut(s)	117, 310
MluCI	AATT	7 cut(s)	270, 301, 406, 451, 485, 862, 908
MlyI	GAGTC	2 cut(s)	183, 532
MmeI	TCCRAC	1 cut(s)	53
MroI	TCCGGA	1 cut(s)	256
MseI	TTAA	5 cut(s)	87, 143, 267, 357, 861
MslI	CAYNNNNRTG	1 cut(s)	662
MspI	CCGG	1 cut(s)	257
NdeII	GATC	3 cut(s)	117, 310, 886
NheI	GCTAGC	1 cut(s)	653
NlaIII	CATG	7 cut(s)	139, 229, 436, 443, 448, 727, 739
NlaIV	GGNNCC	4 cut(s)	231, 243, 298, 820
NmuCI	GTSAC	6 cut(s)	212, 435, 480, 535, 738, 748
NspI	RCATGY	2 cut(s)	436, 739
PciI	ACATGT	2 cut(s)	432, 735
PciSI	GCTCTTC	1 cut(s)	834
PcsI	WCGNNNNNNNCGW	1 cut(s)	787
PfeI	GAWTC	3 cut(s)	201, 388, 809
PkrI	GCNGC	4 cut(s)	7, 40, 610, 829
PleI	GAGTC	2 cut(s)	183, 532
PpsI	GAGTC	2 cut(s)	183, 532
PpuMI	RGGWCCY	1 cut(s)	230
PscI	ACATGT	2 cut(s)	432, 735
Psp5II	RGGWCCY	1 cut(s)	230
PspN4I	GGNNCC	4 cut(s)	231, 243, 298, 820
PspPI	GGNCC	2 cut(s)	7, 230
PspPPI	RGGWCCY	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	880
PsuI	RGATCY	2 cut(s)	117, 310
RsaI	GTAC	2 cut(s)	684, 728
RsaNI	GTAC	2 cut(s)	683, 727
RseI	CAYNNNNRTG	1 cut(s)	662
SapI	GCTCTTC	1 cut(s)	834
SaqAI	TTAA	5 cut(s)	87, 143, 267, 357, 861
SatI	GCNGC	4 cut(s)	6, 39, 609, 828
Sau3AI	GATC	3 cut(s)	117, 310, 886
Sau96I	GGNCC	2 cut(s)	7, 230
SchI	GAGTC	2 cut(s)	183, 532
SetI	ASST	9 cut(s)	133, 235, 243, 417, 482, 680, 705, 750, 757
SfaNI	GCATC	4 cut(s)	156, 312, 592, 722
SfcI	CTRYAG	1 cut(s)	876
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	662
Sse9I	AATT	7 cut(s)	270, 301, 406, 451, 485, 862, 908
SsiI	CCGC	2 cut(s)	5, 38
SspMI	CTAG	3 cut(s)	654, 710, 756
TaaI	ACNGT	3 cut(s)	786, 823, 928
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	3 cut(s)	174, 613, 781
TasI	AATT	7 cut(s)	270, 301, 406, 451, 485, 862, 908
TatI	WGTACW	2 cut(s)	682, 726
TauI	GCSGC	2 cut(s)	8, 41
TfiI	GAWTC	3 cut(s)	201, 388, 809
Tru1I	TTAA	5 cut(s)	87, 143, 267, 357, 861
Tru9I	TTAA	5 cut(s)	87, 143, 267, 357, 861
TscAI	CASTG	4 cut(s)	40, 628, 664, 791
TseFI	GTSAC	6 cut(s)	212, 435, 480, 535, 738, 748
TseI	GCWGC	2 cut(s)	608, 827
Tsp45I	GTSAC	6 cut(s)	212, 435, 480, 535, 738, 748
TspDTI	ATGAA	2 cut(s)	214, 712
TspRI	CASTG	4 cut(s)	40, 628, 664, 791
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	2 cut(s)	270, 908
XceI	RCATGY	2 cut(s)	436, 739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	820
XspI	CTAG	3 cut(s)	654, 710, 756
ZraI	GACGTC	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.