Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Forward (+)

54817554 .. 54818348

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0377400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGTCCTGTGAAGTGTGCTTACTTAGCACTGCTGCTGTTTCTCTCTGCTGCATGCCTGTGGAAGACCTCCGACGCACATTCCCCTCGTCAATTAGAGGGGAATGCTGCTGTGACAAGAATTCAAGCTGTTTCGACCGTAAATGGAGATCATATTCAAATGGTCAGTCCTCCTGATATTGCTACCAAGGAGAACAGGCTAGGAGGAAGGAAACTGGCGGTTCAGAAAGTTAAAGCGGTGAATGGTGCGACTGCTGTAAGGAGCTCAAACCAGCTTGAAGGGAACTGTGGTGGTGATCAAGTGAAGCAGGGTAGTCATGTAGAGTGTAACCAACAAAGTGGTACTGGATTTGAGGGAGTTGATGAGTCTGGTTTTGTAGCTTTTAATGAGGATTACCATGCTCCAAGGCACCACCCGCCTAAGAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

143

Amino Acids

15.25

Weight (kDa)

7.74

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	408
AciI	CCGC	3 cut(s)	218, 236, 416
AcsI	RAATTY	1 cut(s)	120
AfaI	GTAC	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	125, 158, 278
AluBI	AGCT	4 cut(s)	128, 264, 274, 380
AluI	AGCT	4 cut(s)	128, 264, 274, 380
Alw21I	GWGCWC	1 cut(s)	266
ApeKI	GCWGC	3 cut(s)	34, 50, 107
ApoI	RAATTY	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	151, 183
AspS9I	GGNCC	1 cut(s)	5
AsuHPI	GGTGA	2 cut(s)	250, 305
AvaII	GGWCC	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	266
BarI	GAAGNNNNNNTAC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	3 cut(s)	21, 37, 94
BclI	TGATCA	1 cut(s)	295
BfaI	CTAG	1 cut(s)	200
BisI	GCNGC	3 cut(s)	35, 51, 108
BlsI	GCNGC	3 cut(s)	36, 52, 109
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	2 cut(s)	6, 410
BpiI	GAAGAC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	186, 404
Bse1I	ACTGG	2 cut(s)	219, 349
BseDI	CCNNGG	2 cut(s)	186, 404
BseNI	ACTGG	2 cut(s)	219, 349
BseXI	GCAGC	3 cut(s)	21, 37, 94
Bsh1285I	CGRYCG	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	408
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	148, 295
BspACI	CCGC	3 cut(s)	218, 236, 416
BspLI	GGNNCC	2 cut(s)	6, 410
BspT107I	GGYRCC	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	219, 349
BssECI	CCNNGG	2 cut(s)	186, 404
BssMI	GATC	2 cut(s)	148, 295
BssT1I	CCWWGG	2 cut(s)	186, 404
Bst4CI	ACNGT	2 cut(s)	139, 287
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	25, 420
BstKTI	GATC	2 cut(s)	151, 298
BstMBI	GATC	2 cut(s)	148, 295
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 415
BstNSI	RCATGY	1 cut(s)	57
BstV1I	GCAGC	3 cut(s)	21, 37, 94
BstV2I	GAAGAC	1 cut(s)	71
BstXI	CCANNNNNNTGG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	5
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	3 cut(s)	54, 317, 398
CviJI	RGCY	5 cut(s)	128, 199, 264, 274, 380
CviKI_1	RGCY	5 cut(s)	128, 199, 264, 274, 380
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	2 cut(s)	25, 420
DpnI	GATC	2 cut(s)	150, 297
DpnII	GATC	2 cut(s)	148, 295
Ecl136II	GAGCTC	1 cut(s)	264
Eco130I	CCWWGG	2 cut(s)	186, 404
Eco24I	GRGCYC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	5
Eco53kI	GAGCTC	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	186, 404
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	2 cut(s)	186, 404
FaeI	CATG	3 cut(s)	57, 320, 401
FaiI	YATR	4 cut(s)	55, 153, 318, 399
FatI	CATG	3 cut(s)	53, 316, 397
FauI	CCCGC	1 cut(s)	423
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	35, 51, 108
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	35, 51, 108
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	3 cut(s)	35, 51, 108
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	3 cut(s)	57, 320, 401
HinfI	GANTC	1 cut(s)	365
HphI	GGTGA	2 cut(s)	250, 305
Hpy188I	TCNGA	2 cut(s)	73, 225
Hpy188III	TCNNGA	1 cut(s)	173
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	201, 272
HpyCH4III	ACNGT	2 cut(s)	139, 287
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 415
HpyF3I	CTNAG	2 cut(s)	25, 420
Hsp92II	CATG	3 cut(s)	57, 320, 401
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	148, 295
LmnI	GCTCC	2 cut(s)	261, 406
LpnPI	CCDG	9 cut(s)	21, 71, 181, 186, 200, 284, 293, 330, 354
Lsp1109I	GCAGC	3 cut(s)	21, 37, 94
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	112, 326
MalI	GATC	2 cut(s)	150, 297
MboI	GATC	2 cut(s)	148, 295
MboII	GAAGA	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	2 cut(s)	92, 120
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	7 cut(s)	79, 91, 96, 180, 197, 346, 382
MseI	TTAA	2 cut(s)	231, 384
MslI	CAYNNNNRTG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	26, 415
NdeII	GATC	2 cut(s)	148, 295
NlaIII	CATG	3 cut(s)	57, 320, 401
NlaIV	GGNNCC	2 cut(s)	6, 410
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	57
PaeI	GCATGC	1 cut(s)	57
PctI	GAATGC	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	36, 52, 109
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	5
Psp124BI	GAGCTC	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	6, 410
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	58
SacI	GAGCTC	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	231, 384
SatI	GCNGC	3 cut(s)	35, 51, 108
Sau3AI	GATC	2 cut(s)	148, 295
Sau96I	GGNCC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	5 cut(s)	71, 130, 266, 276, 382
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	58
SphI	GCATGC	1 cut(s)	57
Sse9I	AATT	2 cut(s)	92, 120
SsiI	CCGC	3 cut(s)	218, 236, 416
SspMI	CTAG	1 cut(s)	200
SstI	GAGCTC	1 cut(s)	266
StyI	CCWWGG	2 cut(s)	186, 404
TaaI	ACNGT	2 cut(s)	139, 287
TaqI	TCGA	1 cut(s)	134
TasI	AATT	2 cut(s)	92, 120
Tru1I	TTAA	2 cut(s)	231, 384
Tru9I	TTAA	2 cut(s)	231, 384
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	34, 50, 107
Tsp45I	GTSAC	1 cut(s)	112
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	57
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.