Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Reverse (-)

66030444 .. 66034103

Gene Structure 3660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00387360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCTTTAAAGCCAGACCTTTTTGAGGGGATGCGCTTTGACTTCACCAAAGGACTAAATCACAAGTTCTTCCTTAGCCACAGTGTATTCATGGGACCTACAACCATTCCTTCTCAAACTCCTGAAACCATAAAAATCCCTACTGCTAACTATGAGTTTGGTGCAAATTTCATAGACCACCCAAAGTGCCTGCTTTCTGGGAGAGTAATGACAGATGGAAGACTCAGTGCAAGAGTGAAGTATGACTTGAGTGACAATTTCACTTTGAAGGCTAATGCTCAGCTTACAAATGAGCCACATATGTCTCATGGCATTGTCAATGTTGATTACAAGGGTTCAGACCACAGAGCCCAAGTTCAAATGGGAAATGGGACCCTAATTGGGGCGAATTACGTCCAGTCTGTGACTCCACATTTCTCTTTGGGTGGCGAAGTATTTTGGGCTGGTCAGCATCGAAAATCGGGTATCAGTTATGGGGCACGATTCAATACTGACAAGATGGTTGCTACGGGGCAGGTTGCTAGCACTGGAATGGTTGCATTGAACTATGTCCAGCGAGTGTCTGAGAAGGTTTCACTAGCATCAGACTTCATGTACAATTACATGTCAAGCGATGTCACAGCAAGTTTTGGCTATGATTACATTTTCAGACAGAGTCGTATTAGAGGAAAGATTGACACCAATGGCTGCACAGCTGCTTTTCTGGAAGAGAGATTAACTATGGGTCTTAATTTTATTCTTTCTGCAGAGATAGATCACATGAAGAAAGACTACAAATTTGGGTTTGGGATGACAGTTGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

268

Amino Acids

29.83

Weight (kDa)

8.41

Isoelectric Point (pI)

17.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	7 - 261	1.3e-56	Eukaryotic porin
MDM10	PF12519	130 - 225	9.8e-06	Mitochondrial distribution and morphology protein 10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	505
AcsI	RAATTY	2 cut(s)	166, 776
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	3 cut(s)	25, 381, 382
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	4 cut(s)	268, 359, 487, 544
AluBI	AGCT	2 cut(s)	283, 695
AluI	AGCT	2 cut(s)	283, 695
Alw26I	GTCTC	1 cut(s)	309
ApeKI	GCWGC	2 cut(s)	687, 695
ApoI	RAATTY	2 cut(s)	166, 776
ArsI	GACNNNNNNTTYG	2 cut(s)	761, 793
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	95, 372
AsuHPI	GGTGA	1 cut(s)	37
AsuNHI	GCTAGC	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	95, 372
BaeGI	GKGCMC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	352
BarI	GAAGNNNNNNTAC	2 cut(s)	755, 787
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	674, 682
BccI	CCATC	2 cut(s)	209, 493
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	2 cut(s)	522, 578
BfmI	CTRYAG	1 cut(s)	744
BfuAI	ACCTGC	1 cut(s)	505
BisI	GCNGC	2 cut(s)	688, 696
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	2 cut(s)	689, 697
Bme18I	GGWCC	2 cut(s)	95, 372
BmgT120I	GGNCC	2 cut(s)	95, 372
BmiI	GGNNCC	3 cut(s)	96, 373, 374
BmsI	GCATC	3 cut(s)	21, 460, 590
BmtI	GCTAGC	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	74
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 381, 382
Bse1I	ACTGG	2 cut(s)	397, 532
BseGI	GGATG	2 cut(s)	36, 795
BseLI	CCNNNNNNNGG	3 cut(s)	25, 381, 382
BseMII	CTCAG	3 cut(s)	238, 293, 555
BseNI	ACTGG	2 cut(s)	397, 532
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	2 cut(s)	674, 682
BsgI	GTGCAG	1 cut(s)	673
BslFI	GGGAC	2 cut(s)	108, 385
BslI	CCNNNNNNNGG	3 cut(s)	25, 381, 382
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	2 cut(s)	108, 385
Bsp1286I	GDGCHC	2 cut(s)	352, 481
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	1 cut(s)	754
Bsp1720I	GCTNAGC	1 cut(s)	279
BspCNI	CTCAG	3 cut(s)	237, 292, 556
BspLI	GGNNCC	3 cut(s)	96, 373, 374
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	505
BspOI	GCTAGC	1 cut(s)	525
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	397, 532
BssMI	GATC	1 cut(s)	754
Bst4CI	ACNGT	2 cut(s)	83, 796
Bst6I	CTCTTC	1 cut(s)	702
BstAUI	TGTACA	1 cut(s)	594
BstC8I	GCNNGC	2 cut(s)	191, 523
BstDEI	CTNAG	4 cut(s)	74, 224, 279, 564
BstENI	CCTNNNNNAGG	1 cut(s)	23
BstF5I	GGATG	2 cut(s)	36, 795
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	757
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	754
BstNSI	RCATGY	1 cut(s)	607
BstSFI	CTRYAG	1 cut(s)	744
BstSLI	GKGCMC	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	674, 682
BstV2I	GAAGAC	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	2 cut(s)	36, 795
BtsIMutI	CAGTG	3 cut(s)	88, 232, 525
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	2 cut(s)	191, 523
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	95, 372
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	5 cut(s)	91, 308, 592, 604, 760
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	4 cut(s)	74, 224, 279, 564
DpnI	GATC	1 cut(s)	756
DpnII	GATC	1 cut(s)	754
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
Eco24I	GRGCYC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	95, 372
EcoNI	CCTNNNNNAGG	1 cut(s)	23
EcoO109I	RGGNCCY	2 cut(s)	95, 372
EcoT38I	GRGCYC	1 cut(s)	352
FaeI	CATG	5 cut(s)	94, 311, 595, 607, 763
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	2 cut(s)	108, 385
FatI	CATG	5 cut(s)	90, 307, 591, 603, 759
FauNDI	CATATG	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	688, 696
FokI	GGATG	2 cut(s)	43, 802
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	2 cut(s)	688, 696
FspBI	CTAG	2 cut(s)	522, 578
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	2 cut(s)	688, 696
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	5 cut(s)	94, 311, 595, 607, 763
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	4 cut(s)	222, 406, 483, 655
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	4 cut(s)	340, 565, 586, 650
Hpy188III	TCNNGA	2 cut(s)	122, 704
HpyAV	CCTTC	3 cut(s)	120, 262, 562
HpyCH4III	ACNGT	2 cut(s)	83, 796
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	5 cut(s)	164, 230, 539, 690, 746
HpyF3I	CTNAG	4 cut(s)	74, 224, 279, 564
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	5 cut(s)	94, 311, 595, 607, 763
HspAI	GCGC	1 cut(s)	34
KflI	GGGWCCC	1 cut(s)	372
Kzo9I	GATC	1 cut(s)	754
Lsp1109I	GCAGC	2 cut(s)	674, 682
LweI	GCATC	3 cut(s)	21, 460, 590
MaeI	CTAG	2 cut(s)	522, 578
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	3 cut(s)	251, 403, 616
MalI	GATC	1 cut(s)	756
MboI	GATC	1 cut(s)	754
MboII	GAAGA	4 cut(s)	61, 231, 719, 775
MhlI	GDGCHC	2 cut(s)	352, 481
MluCI	AATT	7 cut(s)	166, 256, 378, 388, 598, 730, 776
MlyI	GAGTC	3 cut(s)	216, 400, 664
MmeI	TCCRAC	1 cut(s)	778
MnlI	CCTC	2 cut(s)	19, 659
MseI	TTAA	3 cut(s)	8, 716, 729
MslI	CAYNNNNRTG	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	695
NdeI	CATATG	1 cut(s)	300
NdeII	GATC	1 cut(s)	754
NheI	GCTAGC	1 cut(s)	521
NlaIII	CATG	5 cut(s)	94, 311, 595, 607, 763
NlaIV	GGNNCC	3 cut(s)	96, 373, 374
NmuCI	GTSAC	3 cut(s)	251, 403, 616
NspI	RCATGY	1 cut(s)	607
PciI	ACATGT	1 cut(s)	603
PfeI	GAWTC	1 cut(s)	483
PflFI	GACNNNGTC	1 cut(s)	654
PkrI	GCNGC	2 cut(s)	689, 697
PleI	GAGTC	3 cut(s)	216, 400, 663
PpsI	GAGTC	3 cut(s)	216, 400, 663
PpuMI	RGGWCCY	2 cut(s)	95, 372
PscI	ACATGT	1 cut(s)	603
Psp5II	RGGWCCY	2 cut(s)	95, 372
PspN4I	GGNNCC	3 cut(s)	96, 373, 374
PspPI	GGNCC	2 cut(s)	95, 372
PspPPI	RGGWCCY	2 cut(s)	95, 372
PstI	CTGCAG	1 cut(s)	748
PsyI	GACNNNGTC	1 cut(s)	654
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	1 cut(s)	530
SaqAI	TTAA	3 cut(s)	8, 716, 729
SatI	GCNGC	2 cut(s)	688, 696
Sau3AI	GATC	1 cut(s)	754
Sau96I	GGNCC	2 cut(s)	95, 372
SchI	GAGTC	3 cut(s)	216, 400, 664
SduI	GDGCHC	2 cut(s)	352, 481
SetI	ASST	7 cut(s)	21, 100, 285, 396, 519, 573, 697
SfaNI	GCATC	3 cut(s)	21, 460, 590
SfcI	CTRYAG	1 cut(s)	744
SinI	GGWCC	2 cut(s)	95, 372
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	7 cut(s)	166, 256, 378, 388, 598, 730, 776
SspMI	CTAG	2 cut(s)	522, 578
TaaI	ACNGT	2 cut(s)	83, 796
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	454
TasI	AATT	7 cut(s)	166, 256, 378, 388, 598, 730, 776
TatI	WGTACW	1 cut(s)	594
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	3 cut(s)	8, 716, 729
Tru9I	TTAA	3 cut(s)	8, 716, 729
TscAI	CASTG	3 cut(s)	88, 232, 532
TseFI	GTSAC	3 cut(s)	251, 403, 616
TseI	GCWGC	2 cut(s)	687, 695
Tsp45I	GTSAC	3 cut(s)	251, 403, 616
TspDTI	ATGAA	4 cut(s)	79, 160, 580, 776
TspRI	CASTG	3 cut(s)	88, 232, 532
Tth111I	GACNNNGTC	1 cut(s)	654
VpaK11BI	GGWCC	2 cut(s)	95, 372
XagI	CCTNNNNNAGG	1 cut(s)	23
XapI	RAATTY	2 cut(s)	166, 776
XceI	RCATGY	1 cut(s)	607
XspI	CTAG	2 cut(s)	522, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.