Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Forward (+)

144438 .. 148170

Gene Structure 3733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1002300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGGGTGTTGTGCTTCCAGGTCCAGGTACAGGTACTACCGCGGGAAGGGAGGCAGCGGGGAGCAAGACTCGGACTGAGAAAGTGGACTACACGAACCTGCCTTGCCCCATTACTTATGAAGAAATCCACCACGAAGCTATCATGTCTTTACGGCCACAACTTTTTGAGGGAATGCGCTTTGATTTTTTCAAAAGACTCGACCACAAGTTCTCCCTTAGCCACAGTTTCTCCATGGGACCTGTGACAATTCCTCGTCAATCTGCCGAAATCTTAAAGGTCCCTACTGCCAACTATGAGTTTGGTGCAAATTTTATAGACCACCCAAAGTTGATGCTTGTTGGGAGGGTATTAACAGACGGGAGACTTAATGCAAGAGTCAAGTATGACTTGACTAACAACCTCACTCTCAAGACTAATGCTCAGCTCACAAATGAGCCGCACATGTCTAATGCCATGGTCAATTTGGACTACAAGGGTTCAGACTACAGATCCCAGATTACATTGGTGACTCCTCATTTTTCTTTGGGTGGTGAAGTATTTTGGGCCAGCCAGCATCGAAAGTCAGGTATCGGTTATGCGGCTCGGTTCAACACTGAAAAGATGGTTGCCACAGGGCAGGTTGCTAGCACTGGAATGCTTGCATTGAGCTATGTTCAGAAAGTATCTGACAAGGTTTCACTAGCGTCAGACCTCATGTACAACCACATGTCAAGAGATGTCACAGCAAGTGTTGGCTATGATTACGTCTTCAGACAGAGTCGTGTTAGAGGGAAGATTGATTCCAATGGCTGCACGGCTGCTTATCTTGAAGAGAGATTAAATACGGGTCTTAAGTTTATTCTTTCTGCGGAGATCGATCACAAGAAGAAAGACTACAAATTGGGGTGTGGGATTACACTAGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

304

Amino Acids

33.63

Weight (kDa)

9.07

Isoelectric Point (pI)

27.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	36 - 296	5.4e-54	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	108, 610
AccII	CGCG	1 cut(s)	44
AciI	CCGC	7 cut(s)	5, 42, 44, 59, 440, 581, 851
AclWI	GGATC	1 cut(s)	486
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	736
AfaI	GTAC	3 cut(s)	31, 37, 701
AfiI	CCNNNNNNNGG	3 cut(s)	26, 32, 48
AflII	CTTAAG	1 cut(s)	833
AflIII	ACRYGT	2 cut(s)	444, 708
AgsI	TTSAA	3 cut(s)	193, 592, 812
AjnI	CCWGG	2 cut(s)	19, 25
AluBI	AGCT	3 cut(s)	140, 427, 651
AluI	AGCT	3 cut(s)	140, 427, 651
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	486
AoxI	GGCC	2 cut(s)	155, 546
ApeKI	GCWGC	3 cut(s)	56, 792, 800
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	4 cut(s)	23, 239, 280, 546
AsuHPI	GGTGA	2 cut(s)	520, 545
AsuNHI	GCTAGC	1 cut(s)	626
AvaII	GGWCC	3 cut(s)	23, 239, 280
BarI	GAAGNNNNNNTAC	2 cut(s)	860, 892
BbsI	GAAGAC	1 cut(s)	742
BbvI	GCAGC	3 cut(s)	68, 779, 787
BccI	CCATC	1 cut(s)	598
BceAI	ACGGC	2 cut(s)	170, 813
BciT130I	CCWGG	2 cut(s)	21, 27
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	3 cut(s)	627, 683, 902
BfmI	CTRYAG	1 cut(s)	487
BfrI	CTTAAG	1 cut(s)	833
BfuAI	ACCTGC	2 cut(s)	108, 610
BisI	GCNGC	5 cut(s)	57, 440, 582, 793, 801
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	5 cut(s)	58, 441, 583, 794, 802
Bme1390I	CCNGG	2 cut(s)	21, 27
Bme18I	GGWCC	3 cut(s)	23, 239, 280
BmgT120I	GGNCC	4 cut(s)	23, 239, 280, 546
BmiI	GGNNCC	2 cut(s)	240, 282
BmrFI	CCNGG	2 cut(s)	21, 27
BmsI	GCATC	2 cut(s)	324, 565
BmtI	GCTAGC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	742
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
Bpu10I	CCTNAGC	1 cut(s)	218
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	858
BsaJI	CCNNGG	3 cut(s)	42, 234, 456
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 215, 227, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 32, 48
Bse1I	ACTGG	1 cut(s)	637
BseBI	CCWGG	2 cut(s)	21, 27
BseCI	ATCGAT	1 cut(s)	858
BseDI	CCNNGG	3 cut(s)	42, 234, 456
BseLI	CCNNNNNNNGG	3 cut(s)	26, 32, 48
BseMII	CTCAG	2 cut(s)	69, 437
BseNI	ACTGG	1 cut(s)	637
BseRI	GAGGAG	1 cut(s)	504
BseXI	GCAGC	3 cut(s)	68, 779, 787
BsgI	GTGCAG	1 cut(s)	778
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	157, 548
BshVI	ATCGAT	1 cut(s)	858
BslFI	GGGAC	2 cut(s)	252, 266
BslI	CCNNNNNNNGG	3 cut(s)	26, 32, 48
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	2 cut(s)	252, 266
BsmI	GAATGC	2 cut(s)	180, 642
BsnI	GGCC	2 cut(s)	157, 548
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	3 cut(s)	491, 855, 859
Bsp1720I	GCTNAGC	1 cut(s)	423
Bsp19I	CCATGG	2 cut(s)	234, 456
BspACI	CCGC	7 cut(s)	5, 42, 44, 59, 440, 581, 851
BspANI	GGCC	2 cut(s)	157, 548
BspCNI	CTCAG	2 cut(s)	70, 436
BspDI	ATCGAT	1 cut(s)	858
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	2 cut(s)	240, 282
BspMI	ACCTGC	2 cut(s)	108, 610
BspOI	GCTAGC	1 cut(s)	630
BspPI	GGATC	1 cut(s)	486
BspTI	CTTAAG	1 cut(s)	833
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	637
BssECI	CCNNGG	3 cut(s)	42, 234, 456
BssMI	GATC	3 cut(s)	491, 855, 859
BssT1I	CCWWGG	2 cut(s)	234, 456
Bst2UI	CCWGG	2 cut(s)	21, 27
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	807
BstAFI	CTTAAG	1 cut(s)	833
BstAUI	TGTACA	1 cut(s)	699
BstC8I	GCNNGC	4 cut(s)	550, 554, 628, 642
BstDEI	CTNAG	3 cut(s)	78, 218, 423
BstDSI	CCRYGG	3 cut(s)	42, 234, 456
BstFNI	CGCG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	3 cut(s)	494, 858, 862
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	3 cut(s)	491, 855, 859
BstNI	CCWGG	2 cut(s)	21, 27
BstNSI	RCATGY	2 cut(s)	448, 712
BstSCI	CCNGG	2 cut(s)	19, 25
BstSFI	CTRYAG	1 cut(s)	487
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	3 cut(s)	68, 779, 787
BstV2I	GAAGAC	1 cut(s)	742
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
Bsu15I	ATCGAT	1 cut(s)	858
BsuRI	GGCC	2 cut(s)	157, 548
BsuTUI	ATCGAT	1 cut(s)	858
BtgI	CCRYGG	3 cut(s)	42, 234, 456
BtsIMutI	CAGTG	2 cut(s)	594, 630
BveI	ACCTGC	2 cut(s)	108, 610
Cac8I	GCNNGC	4 cut(s)	550, 554, 628, 642
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	4 cut(s)	23, 239, 280, 546
Cfr42I	CCGCGG	1 cut(s)	45
ClaI	ATCGAT	1 cut(s)	858
CseI	GACGC	1 cut(s)	675
Csp6I	GTAC	3 cut(s)	30, 36, 700
CviAII	CATG	6 cut(s)	145, 235, 445, 457, 697, 709
CviQI	GTAC	3 cut(s)	30, 36, 700
DdeI	CTNAG	3 cut(s)	78, 218, 423
DpnI	GATC	3 cut(s)	493, 857, 861
DpnII	GATC	3 cut(s)	491, 855, 859
EaeI	YGGCCR	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Eco130I	CCWWGG	2 cut(s)	234, 456
Eco47I	GGWCC	3 cut(s)	23, 239, 280
Eco57I	CTGAAG	1 cut(s)	736
EcoO109I	RGGNCCY	2 cut(s)	239, 280
EcoRII	CCWGG	2 cut(s)	19, 25
EcoT14I	CCWWGG	2 cut(s)	234, 456
ErhI	CCWWGG	2 cut(s)	234, 456
FaeI	CATG	6 cut(s)	148, 238, 448, 460, 700, 712
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	2 cut(s)	252, 266
FatI	CATG	6 cut(s)	144, 234, 444, 456, 696, 708
FauI	CCCGC	2 cut(s)	37, 52
Fnu4HI	GCNGC	5 cut(s)	57, 440, 582, 793, 801
Fsp4HI	GCNGC	5 cut(s)	57, 440, 582, 793, 801
FspBI	CTAG	3 cut(s)	627, 683, 902
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	5 cut(s)	57, 440, 582, 793, 801
HaeIII	GGCC	2 cut(s)	157, 548
HgaI	GACGC	1 cut(s)	675
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	6 cut(s)	148, 238, 448, 460, 700, 712
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HinfI	GANTC	6 cut(s)	70, 198, 378, 511, 760, 782
HphI	GGTGA	2 cut(s)	520, 545
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	6 cut(s)	75, 484, 660, 670, 691, 755
Hpy188III	TCNNGA	3 cut(s)	412, 714, 809
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	4 cut(s)	308, 374, 644, 795
HpyF3I	CTNAG	3 cut(s)	78, 218, 423
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	6 cut(s)	148, 238, 448, 460, 700, 712
HspAI	GCGC	1 cut(s)	178
KspI	CCGCGG	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	491, 855, 859
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	3 cut(s)	68, 779, 787
LweI	GCATC	2 cut(s)	324, 565
MaeI	CTAG	3 cut(s)	627, 683, 902
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	3 cut(s)	244, 508, 721
MalI	GATC	3 cut(s)	493, 857, 861
MboI	GATC	3 cut(s)	491, 855, 859
MboII	GAAGA	5 cut(s)	134, 742, 787, 824, 880
MflI	RGATCY	1 cut(s)	491
MluCI	AATT	4 cut(s)	249, 310, 463, 881
MlyI	GAGTC	5 cut(s)	64, 192, 387, 505, 769
MnlI	CCTC	8 cut(s)	46, 163, 264, 339, 413, 525, 704, 764
MseI	TTAA	5 cut(s)	275, 353, 369, 821, 834
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	2 cut(s)	44, 59
MspCI	CTTAAG	1 cut(s)	833
MspR9I	CCNGG	2 cut(s)	21, 27
Mva1269I	GAATGC	2 cut(s)	180, 642
MvaI	CCWGG	2 cut(s)	21, 27
MvnI	CGCG	1 cut(s)	44
NcoI	CCATGG	2 cut(s)	234, 456
NdeII	GATC	3 cut(s)	491, 855, 859
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	6 cut(s)	148, 238, 448, 460, 700, 712
NlaIV	GGNNCC	2 cut(s)	240, 282
NmuCI	GTSAC	3 cut(s)	244, 508, 721
NspI	RCATGY	2 cut(s)	448, 712
PciI	ACATGT	2 cut(s)	444, 708
PctI	GAATGC	2 cut(s)	180, 642
PfeI	GAWTC	1 cut(s)	782
PflFI	GACNNNGTC	1 cut(s)	759
PkrI	GCNGC	5 cut(s)	58, 441, 583, 794, 802
PleI	GAGTC	5 cut(s)	64, 192, 386, 505, 768
PpsI	GAGTC	5 cut(s)	64, 192, 386, 505, 768
PpuMI	RGGWCCY	2 cut(s)	239, 280
PscI	ACATGT	2 cut(s)	444, 708
Psp5II	RGGWCCY	2 cut(s)	239, 280
Psp6I	CCWGG	2 cut(s)	19, 25
PspGI	CCWGG	2 cut(s)	19, 25
PspN4I	GGNNCC	2 cut(s)	240, 282
PspPI	GGNCC	4 cut(s)	23, 239, 280, 546
PspPPI	RGGWCCY	2 cut(s)	239, 280
PsuI	RGATCY	1 cut(s)	491
PsyI	GACNNNGTC	1 cut(s)	759
RsaI	GTAC	3 cut(s)	31, 37, 701
RsaNI	GTAC	3 cut(s)	30, 36, 700
RseI	CAYNNNNRTG	1 cut(s)	635
SacII	CCGCGG	1 cut(s)	45
SaqAI	TTAA	5 cut(s)	275, 353, 369, 821, 834
SatI	GCNGC	5 cut(s)	57, 440, 582, 793, 801
Sau3AI	GATC	3 cut(s)	491, 855, 859
Sau96I	GGNCC	4 cut(s)	23, 239, 280, 546
SchI	GAGTC	5 cut(s)	64, 192, 387, 505, 769
ScrFI	CCNGG	2 cut(s)	21, 27
SfaNI	GCATC	2 cut(s)	324, 565
SfcI	CTRYAG	1 cut(s)	487
Sfr303I	CCGCGG	1 cut(s)	45
SgrBI	CCGCGG	1 cut(s)	45
SinI	GGWCC	3 cut(s)	23, 239, 280
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	2 cut(s)	410, 833
SmoI	CTYRAG	2 cut(s)	410, 833
Sse9I	AATT	4 cut(s)	249, 310, 463, 881
SsiI	CCGC	7 cut(s)	5, 42, 44, 59, 440, 581, 851
SspMI	CTAG	3 cut(s)	627, 683, 902
StyD4I	CCNGG	2 cut(s)	19, 25
StyI	CCWWGG	2 cut(s)	234, 456
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	3 cut(s)	201, 559, 858
TasI	AATT	4 cut(s)	249, 310, 463, 881
TatI	WGTACW	1 cut(s)	699
TauI	GCSGC	2 cut(s)	442, 584
TfiI	GAWTC	1 cut(s)	782
Tru1I	TTAA	5 cut(s)	275, 353, 369, 821, 834
Tru9I	TTAA	5 cut(s)	275, 353, 369, 821, 834
TscAI	CASTG	2 cut(s)	601, 637
TseFI	GTSAC	3 cut(s)	244, 508, 721
TseI	GCWGC	3 cut(s)	56, 792, 800
Tsp45I	GTSAC	3 cut(s)	244, 508, 721
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	601, 637
Tth111I	GACNNNGTC	1 cut(s)	759
Vha464I	CTTAAG	1 cut(s)	833
VpaK11BI	GGWCC	3 cut(s)	23, 239, 280
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	2 cut(s)	448, 712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XspI	CTAG	3 cut(s)	627, 683, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.