Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Forward (+)

54824078 .. 54830163

Gene Structure 6086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0377600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGATGACTGGGAACTGATCCAAAGGAACATGTTTGACTGGGAACAGATCCGGAAGAAGAAGAACGGTGTCATGAAGCGTAGGACCAAACGTCCTGGAGGCGAGCAATTCACTATCCAGGCGAGCTTGGAGACGGAGTTGGAGACTTGGAGTCCATGGTTGCGGGGTCTGCAACGAGCTAAACCCGTTGCAAACTACCTGATCCCGGATTCAGGAGTTGACGTGCTGAAGTGGCTTGATGGGTGCCCGGATGGGTCAGTGATCTACATTTGTTTTGGGAGTCAGAAGTTGCTAAATAGGCAACAAATGGAGGTGTTGGCTTCCGGGCTCGAAAAGAGTGGAGTTCGATTTGTGTGGGCTGTGAAAGAGGGCTCGGCCCAACAGATTGAGGAAGGGCTCGGAGTTGTACCTGATGGGCTTGAGGAAAGGGTTGCCGGCCGAGGAGTGTTGATAAAGAGTTGGGTCCCCCAGGTGTTGATCCTGAGTCATCAGGCCGTAGGTGGATTTATCAGCCACTATGGGTGGAACTCTGTGCTCGAAGCTATGGTTTCGGTGGGTGAGGGTGCTAATGGGATACCCGACCCGGCCCATTTGGCAAAGATGATCCATGAGTCACTGACTGAGAACATACCTGAAAAGGTGAGTGCAAGGGTGCTTAGGGACAAGGCATTTGGTGCTGTGAGAAATGGTGGGAGCTCTTCCAAGCATTTGGATGAGCTTGTGAAAGAATTGGGCCAGCTTAAAGTAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

251

Amino Acids

27.85

Weight (kDa)

7.77

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	86 - 183	3.3e-10	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AccIII	TCCGGA	1 cut(s)	51
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	5 cut(s)	13, 43, 196, 472, 598
AcoI	YGGCCR	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	205, 212
AflIII	ACRYGT	1 cut(s)	30
AhdI	GACNNNNNGTC	2 cut(s)	90, 150
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	3 cut(s)	94, 117, 468
AluBI	AGCT	6 cut(s)	126, 179, 542, 696, 718, 739
AluI	AGCT	6 cut(s)	126, 179, 542, 696, 718, 739
Alw21I	GWGCWC	2 cut(s)	537, 698
Alw26I	GTCTC	2 cut(s)	125, 137
AlwI	GGATC	5 cut(s)	13, 43, 196, 472, 598
Aor13HI	TCCGGA	1 cut(s)	51
AoxI	GGCC	5 cut(s)	375, 436, 492, 585, 733
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AspS9I	GGNCC	5 cut(s)	84, 376, 463, 586, 733
AsuC2I	CCSGG	4 cut(s)	206, 248, 325, 584
AsuHPI	GGTGA	2 cut(s)	569, 652
AvaII	GGWCC	2 cut(s)	84, 463
BaeGI	GKGCMC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	243
BanII	GRGCYC	4 cut(s)	330, 374, 399, 698
Bbv12I	GWGCWC	2 cut(s)	537, 698
BccI	CCATC	3 cut(s)	233, 245, 407
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	3 cut(s)	96, 119, 470
BciVI	GTATCC	1 cut(s)	567
BcnI	CCSGG	4 cut(s)	206, 248, 325, 584
BcoDI	GTCTC	2 cut(s)	125, 137
BfuI	GTATCC	1 cut(s)	567
BglI	GCCNNNNNGGC	1 cut(s)	593
Bme1390I	CCNGG	7 cut(s)	96, 119, 206, 248, 325, 470, 584
Bme18I	GGWCC	2 cut(s)	84, 463
BmeRI	GACNNNNNGTC	2 cut(s)	90, 150
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	5 cut(s)	84, 376, 463, 586, 733
BmiI	GGNNCC	3 cut(s)	245, 464, 465
BmrFI	CCNGG	7 cut(s)	96, 119, 206, 248, 325, 470, 584
BmrI	ACTGGG	2 cut(s)	19, 49
BmuI	ACTGGG	2 cut(s)	19, 49
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	4 cut(s)	206, 248, 325, 584
BsaJI	CCNNGG	3 cut(s)	155, 439, 468
BsaWI	WCCGGW	1 cut(s)	51
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 207, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 212
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	14, 44
BseAI	TCCGGA	1 cut(s)	51
BseBI	CCWGG	3 cut(s)	96, 119, 470
BseDI	CCNNGG	3 cut(s)	155, 439, 468
BseGI	GGATG	3 cut(s)	10, 256, 718
BseLI	CCNNNNNNNGG	2 cut(s)	205, 212
BseMII	CTCAG	2 cut(s)	473, 612
BseNI	ACTGG	2 cut(s)	14, 44
BseRI	GAGGAG	1 cut(s)	456
BseSI	GKGCMC	1 cut(s)	248
BseX3I	CGGCCG	1 cut(s)	436
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	5 cut(s)	377, 438, 494, 587, 735
BshNI	GGYRCC	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	2 cut(s)	537, 698
BsiSI	CCGG	6 cut(s)	52, 206, 248, 324, 435, 584
BslFI	GGGAC	2 cut(s)	449, 674
BslI	CCNNNNNNNGG	2 cut(s)	205, 212
BsmAI	GTCTC	2 cut(s)	125, 137
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	2 cut(s)	449, 674
BsnI	GGCC	5 cut(s)	377, 438, 494, 587, 735
Bsp1286I	GDGCHC	6 cut(s)	248, 330, 374, 399, 537, 698
Bsp13I	TCCGGA	1 cut(s)	51
Bsp143I	GATC	6 cut(s)	18, 48, 201, 261, 477, 603
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	5 cut(s)	377, 438, 494, 587, 735
BspCNI	CTCAG	2 cut(s)	474, 613
BspEI	TCCGGA	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	3 cut(s)	245, 464, 465
BspPI	GGATC	5 cut(s)	13, 43, 196, 472, 598
BspQI	GCTCTTC	1 cut(s)	703
BspT107I	GGYRCC	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	14, 44
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	3 cut(s)	155, 439, 468
BssMI	GATC	6 cut(s)	18, 48, 201, 261, 477, 603
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	3 cut(s)	96, 119, 470
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	703
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstC8I	GCNNGC	4 cut(s)	104, 124, 436, 737
BstDEI	CTNAG	3 cut(s)	482, 621, 656
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	3 cut(s)	10, 256, 718
BstKTI	GATC	6 cut(s)	21, 51, 204, 264, 480, 606
BstMAI	GTCTC	2 cut(s)	125, 137
BstMBI	GATC	6 cut(s)	18, 48, 201, 261, 477, 603
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	5 cut(s)	169, 232, 298, 593, 674
BstNI	CCWGG	3 cut(s)	96, 119, 470
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	7 cut(s)	94, 117, 204, 246, 323, 468, 582
BstSLI	GKGCMC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	436
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	5 cut(s)	377, 438, 494, 587, 735
BtgI	CCRYGG	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	10, 256, 718
BtsIMutI	CAGTG	2 cut(s)	264, 614
Cac8I	GCNNGC	4 cut(s)	104, 124, 436, 737
CciI	TCATGA	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	5 cut(s)	84, 376, 463, 586, 733
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	4 cut(s)	31, 73, 156, 608
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	3 cut(s)	482, 621, 656
DpnI	GATC	6 cut(s)	20, 50, 203, 263, 479, 605
DpnII	GATC	6 cut(s)	18, 48, 201, 261, 477, 603
DriI	GACNNNNNGTC	2 cut(s)	90, 150
EaeI	YGGCCR	1 cut(s)	436
EagI	CGGCCG	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	703
Eam1105I	GACNNNNNGTC	2 cut(s)	90, 150
EarI	CTCTTC	1 cut(s)	703
Ecl136II	GAGCTC	1 cut(s)	696
EclXI	CGGCCG	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	4 cut(s)	330, 374, 399, 698
Eco47I	GGWCC	2 cut(s)	84, 463
Eco52I	CGGCCG	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	696
Eco57I	CTGAAG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	696
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRII	CCWGG	3 cut(s)	94, 117, 468
EcoT14I	CCWWGG	1 cut(s)	155
EcoT38I	GRGCYC	4 cut(s)	330, 374, 399, 698
ErhI	CCWWGG	1 cut(s)	155
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	4 cut(s)	34, 76, 159, 611
FaiI	YATR	7 cut(s)	32, 74, 157, 519, 545, 609, 629
FaqI	GGGAC	2 cut(s)	449, 674
FatI	CATG	4 cut(s)	30, 72, 155, 607
FauI	CCCGC	1 cut(s)	156
FokI	GGATG	3 cut(s)	17, 263, 725
FriOI	GRGCYC	4 cut(s)	330, 374, 399, 698
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	5 cut(s)	377, 438, 494, 587, 735
HapII	CCGG	6 cut(s)	52, 206, 248, 324, 435, 584
Hin1II	CATG	4 cut(s)	34, 76, 159, 611
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	5 cut(s)	151, 209, 280, 484, 611
HpaII	CCGG	6 cut(s)	52, 206, 248, 324, 435, 584
HphI	GGTGA	2 cut(s)	569, 652
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	285, 401
Hpy188III	TCNNGA	4 cut(s)	52, 73, 213, 481
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	2 cut(s)	91, 222
HpyCH4V	TGCA	3 cut(s)	172, 191, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	169, 232, 298, 593, 674
HpyF3I	CTNAG	3 cut(s)	482, 621, 656
HpySE526I	ACGT	2 cut(s)	91, 222
Hsp92II	CATG	4 cut(s)	34, 76, 159, 611
KflI	GGGWCCC	1 cut(s)	463
Kpn2I	TCCGGA	1 cut(s)	51
KroI	GCCGGC	1 cut(s)	434
KroNI	GCCGGC	1 cut(s)	436
Kzo9I	GATC	6 cut(s)	18, 48, 201, 261, 477, 603
LguI	GCTCTTC	1 cut(s)	703
LmnI	GCTCC	1 cut(s)	693
MaeII	ACGT	2 cut(s)	91, 222
MaeIII	GTNAC	2 cut(s)	612, 745
MalI	GATC	6 cut(s)	20, 50, 203, 263, 479, 605
MboI	GATC	6 cut(s)	18, 48, 201, 261, 477, 603
MboII	GAAGA	4 cut(s)	67, 70, 73, 690
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	6 cut(s)	248, 330, 374, 399, 537, 698
MluCI	AATT	2 cut(s)	107, 728
MlyI	GAGTC	4 cut(s)	160, 289, 493, 620
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	7 cut(s)	92, 304, 361, 382, 415, 434, 553
MroI	TCCGGA	1 cut(s)	51
MroNI	GCCGGC	1 cut(s)	434
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	1 cut(s)	711
MspI	CCGG	6 cut(s)	52, 206, 248, 324, 435, 584
MspR9I	CCNGG	7 cut(s)	96, 119, 206, 248, 325, 470, 584
MvaI	CCWGG	3 cut(s)	96, 119, 470
MwoI	GCNNNNNNNGC	5 cut(s)	169, 232, 298, 593, 674
NaeI	GCCGGC	1 cut(s)	436
NciI	CCSGG	4 cut(s)	206, 248, 325, 584
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	6 cut(s)	18, 48, 201, 261, 477, 603
NgoMIV	GCCGGC	1 cut(s)	434
NlaIII	CATG	4 cut(s)	34, 76, 159, 611
NlaIV	GGNNCC	3 cut(s)	245, 464, 465
NmeAIII	GCCGAG	2 cut(s)	353, 464
NmuCI	GTSAC	1 cut(s)	612
NspI	RCATGY	1 cut(s)	34
PagI	TCATGA	1 cut(s)	72
PciI	ACATGT	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	703
PdiI	GCCGGC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	209
PfoI	TCCNGGA	2 cut(s)	94, 204
PleI	GAGTC	4 cut(s)	159, 288, 492, 619
PpsI	GAGTC	4 cut(s)	159, 288, 492, 619
PpuMI	RGGWCCY	1 cut(s)	463
PscI	ACATGT	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	698
Psp5II	RGGWCCY	1 cut(s)	463
Psp6I	CCWGG	3 cut(s)	94, 117, 468
PspGI	CCWGG	3 cut(s)	94, 117, 468
PspN4I	GGNNCC	3 cut(s)	245, 464, 465
PspPI	GGNCC	5 cut(s)	84, 376, 463, 586, 733
PspPPI	RGGWCCY	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
RseI	CAYNNNNRTG	1 cut(s)	711
SacI	GAGCTC	1 cut(s)	698
SapI	GCTCTTC	1 cut(s)	703
SaqAI	TTAA	1 cut(s)	741
Sau3AI	GATC	6 cut(s)	18, 48, 201, 261, 477, 603
Sau96I	GGNCC	5 cut(s)	84, 376, 463, 586, 733
SchI	GAGTC	4 cut(s)	160, 289, 493, 620
ScrFI	CCNGG	7 cut(s)	96, 119, 206, 248, 325, 470, 584
SduI	GDGCHC	6 cut(s)	248, 330, 374, 399, 537, 698
SinI	GGWCC	2 cut(s)	84, 463
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	2 cut(s)	107, 728
SsiI	CCGC	1 cut(s)	163
SstI	GAGCTC	1 cut(s)	698
StyD4I	CCNGG	7 cut(s)	94, 117, 204, 246, 323, 468, 582
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	2 cut(s)	94, 225
TaqI	TCGA	3 cut(s)	330, 346, 537
TasI	AATT	2 cut(s)	107, 728
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	2 cut(s)	264, 621
TseFI	GTSAC	1 cut(s)	612
Tsp45I	GTSAC	1 cut(s)	612
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	264, 621
VpaK11BI	GGWCC	2 cut(s)	84, 463
XceI	RCATGY	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.