Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Forward (+)

15623869 .. 15628942

Gene Structure 5074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCGGGCCTCGTTCCTCCTCCACCCACTGCTCCTGATACTCCCAAAGAGGATGAGCGAACCGATTACTTCAATCTTCCCTGCCCTATCGCCTACGATGAGATCTCCCGCGAAGCTTACATGTCTTTGAAGCCAGAGCTTTTCGAGGGGCTGCGCATCGATTTCACCAAGGGCCTCAATCAGAAGTTCTCTCTCAGTCACAGTGTGTCCATGGGACCCACGGAGGTTCCTTCGCAGTCTCCTGAAACTATTAAAATTCCCACTGCTCAGTATGAGTTTGGTGCCAATTTTTTGGACCCAAAGCTGATGCTTGTCGGGAGAGTATTGACTGATGGGAGGCTTACTGCGAGATTAAAGGGTGATTTAACTGATAATCTTTCTTTGAAGGCTAATGCTCAGCTTACCAACGAGCCACACATGTCACATGGCATGGCAAGTTTTGATTACAAGGGTAGAGATTTCAGGTCACAGTTTCAGCTAGGGAATGGTGCACTGTTTGGTGCTAACTATATTCAGAGTGTGACCCGCAATCTGTCCTTGGGTGGTGAAGTGTTTTGGGCTGGTCAGCATCGGAAGTCTGGTATTGGCTATGCTGCTCGTTACAACACAGACAATATGGTTGCCACAGGGCAAGTTGCTAGTACCGGAGTTGTTGCTATGAGCTATGTTCAGAAGGTGAATGATAAGGTCTCTCTAGCATCAGATTTTATGTACAACTACTTATCAAGAGAGGCGACAGCTAGTCTCGGTTATGATTACATTCTTCGACAGTGTCGTCTTAGGGGAAAGATTGATTCCAATGGTGTAGCTGCTGCCTTTTTGGAAGAGCGACTAAATATGGGTCTTAATTTTATTCTTTCTGCAGAGATTGATCACAGAAGGAAAGACTACAAATTTGGGTTCGGATTGACTGTTGGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

308

Amino Acids

33.99

Weight (kDa)

6.54

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	28 - 300	6.1e-65	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	774
Acc16I	TGCGCA	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	1 cut(s)	111
AciI	CCGC	3 cut(s)	5, 109, 526
AcsI	RAATTY	2 cut(s)	255, 893
AdeI	CACNNNGTG	1 cut(s)	205
AfaI	GTAC	2 cut(s)	643, 713
AflIII	ACRYGT	2 cut(s)	120, 417
AgsI	TTSAA	3 cut(s)	73, 130, 385
AhdI	GACNNNNNGTC	1 cut(s)	741
AluBI	AGCT	8 cut(s)	116, 139, 304, 400, 478, 663, 740, 809
AluI	AGCT	8 cut(s)	116, 139, 304, 400, 478, 663, 740, 809
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	3 cut(s)	243, 694, 749
Alw44I	GTGCAC	1 cut(s)	489
AoxI	GGCC	2 cut(s)	7, 172
ApaLI	GTGCAC	1 cut(s)	489
ApeKI	GCWGC	4 cut(s)	151, 593, 809, 812
ApoI	RAATTY	2 cut(s)	255, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	4 cut(s)	7, 172, 215, 295
AsuHPI	GGTGA	4 cut(s)	157, 371, 557, 688
AvaII	GGWCC	2 cut(s)	215, 295
BaeGI	GKGCMC	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	4 cut(s)	138, 580, 796, 799
BccI	CCATC	1 cut(s)	326
BclI	TGATCA	1 cut(s)	871
BcoDI	GTCTC	3 cut(s)	243, 694, 749
BfaI	CTAG	4 cut(s)	479, 639, 695, 741
BfmI	CTRYAG	1 cut(s)	861
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	4 cut(s)	152, 594, 810, 813
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	4 cut(s)	153, 595, 811, 814
Bme18I	GGWCC	2 cut(s)	215, 295
BmeRI	GACNNNNNGTC	1 cut(s)	741
BmgT120I	GGNCC	4 cut(s)	7, 172, 215, 295
BmiI	GGNNCC	5 cut(s)	216, 217, 228, 283, 297
BmsI	GCATC	4 cut(s)	165, 297, 577, 707
Bpu1102I	GCTNAGC	1 cut(s)	396
Bsa29I	ATCGAT	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	694
BsaJI	CCNNGG	4 cut(s)	168, 210, 219, 537
BsaWI	WCCGGW	1 cut(s)	644
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	4 cut(s)	168, 210, 219, 537
BseGI	GGATG	1 cut(s)	58
BseMII	CTCAG	3 cut(s)	208, 281, 410
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	4 cut(s)	138, 580, 796, 799
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	9, 174
BshNI	GGYRCC	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	228
BsmAI	GTCTC	3 cut(s)	243, 694, 749
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	9, 174
Bso31I	GGTCTC	1 cut(s)	694
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	2 cut(s)	102, 871
Bsp1720I	GCTNAGC	1 cut(s)	396
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	3 cut(s)	5, 109, 526
BspANI	GGCC	2 cut(s)	9, 174
BspCNI	CTCAG	3 cut(s)	207, 280, 409
BspDI	ATCGAT	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	5 cut(s)	216, 217, 228, 283, 297
BspMAI	CTGCAG	1 cut(s)	865
BspQI	GCTCTTC	1 cut(s)	819
BspT107I	GGYRCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	694
BsrGI	TGTACA	1 cut(s)	711
BssECI	CCNNGG	4 cut(s)	168, 210, 219, 537
BssMI	GATC	2 cut(s)	102, 871
BssT1I	CCWWGG	3 cut(s)	168, 210, 537
Bst4CI	ACNGT	5 cut(s)	203, 471, 495, 771, 913
Bst6I	CTCTTC	1 cut(s)	819
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	4 cut(s)	194, 267, 396, 779
BstDSI	CCRYGG	2 cut(s)	210, 219
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	2 cut(s)	105, 874
BstMAI	GTCTC	3 cut(s)	243, 694, 749
BstMBI	GATC	2 cut(s)	102, 871
BstNSI	RCATGY	2 cut(s)	124, 421
BstSFI	CTRYAG	1 cut(s)	861
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	4 cut(s)	138, 580, 796, 799
BstX2I	RGATCY	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	9, 174
BsuTUI	ATCGAT	1 cut(s)	159
BtgI	CCRYGG	2 cut(s)	210, 219
BtsCI	GGATG	1 cut(s)	58
BtsI	GCAGTG	2 cut(s)	27, 261
BtsIMutI	CAGTG	5 cut(s)	27, 208, 261, 491, 776
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	4 cut(s)	7, 172, 215, 295
ClaI	ATCGAT	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	642, 712
CviAII	CATG	5 cut(s)	121, 211, 418, 425, 430
CviQI	GTAC	2 cut(s)	642, 712
DdeI	CTNAG	4 cut(s)	194, 267, 396, 779
DpnI	GATC	2 cut(s)	104, 873
DpnII	GATC	2 cut(s)	102, 871
DraIII	CACNNNGTG	1 cut(s)	205
DrdI	GACNNNNNNGTC	1 cut(s)	774
DriI	GACNNNNNGTC	1 cut(s)	741
DseDI	GACNNNNNNGTC	1 cut(s)	774
Eam1104I	CTCTTC	1 cut(s)	819
Eam1105I	GACNNNNNGTC	1 cut(s)	741
EarI	CTCTTC	1 cut(s)	819
Eco130I	CCWWGG	3 cut(s)	168, 210, 537
Eco31I	GGTCTC	1 cut(s)	694
Eco47I	GGWCC	2 cut(s)	215, 295
EcoO109I	RGGNCCY	2 cut(s)	172, 215
EcoT14I	CCWWGG	3 cut(s)	168, 210, 537
ErhI	CCWWGG	3 cut(s)	168, 210, 537
FaeI	CATG	5 cut(s)	124, 214, 421, 428, 433
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	5 cut(s)	120, 210, 417, 424, 429
FauI	CCCGC	2 cut(s)	116, 533
FbaI	TGATCA	1 cut(s)	871
Fnu4HI	GCNGC	4 cut(s)	152, 594, 810, 813
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	4 cut(s)	152, 594, 810, 813
FspBI	CTAG	4 cut(s)	479, 639, 695, 741
FspI	TGCGCA	1 cut(s)	155
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	4 cut(s)	152, 594, 810, 813
HaeIII	GGCC	2 cut(s)	9, 174
HapII	CCGG	1 cut(s)	645
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	5 cut(s)	124, 214, 421, 428, 433
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	1 cut(s)	794
HpaII	CCGG	1 cut(s)	645
HphI	GGTGA	4 cut(s)	157, 371, 557, 688
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	6 cut(s)	183, 516, 573, 672, 703, 905
Hpy188III	TCNNGA	4 cut(s)	35, 242, 316, 726
Hpy8I	GTNNAC	1 cut(s)	491
HpyAV	CCTTC	4 cut(s)	240, 379, 667, 873
HpyCH4III	ACNGT	5 cut(s)	203, 471, 495, 771, 913
HpyCH4V	TGCA	2 cut(s)	491, 863
HpyF3I	CTNAG	4 cut(s)	194, 267, 396, 779
Hsp92II	CATG	5 cut(s)	124, 214, 421, 428, 433
HspAI	GCGC	1 cut(s)	154
KflI	GGGWCCC	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	2 cut(s)	102, 871
LguI	GCTCTTC	1 cut(s)	819
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	9 cut(s)	48, 94, 147, 255, 448, 546, 564, 612, 658
Lsp1109I	GCAGC	4 cut(s)	138, 580, 796, 799
LweI	GCATC	4 cut(s)	165, 297, 577, 707
MaeI	CTAG	4 cut(s)	479, 639, 695, 741
MaeIII	GTNAC	5 cut(s)	197, 420, 465, 520, 599
MalI	GATC	2 cut(s)	104, 873
MboI	GATC	2 cut(s)	102, 871
MboII	GAAGA	3 cut(s)	68, 755, 836
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	4 cut(s)	255, 286, 847, 893
MnlI	CCTC	9 cut(s)	20, 27, 30, 43, 139, 185, 217, 330, 724
MseI	TTAA	4 cut(s)	252, 353, 365, 846
MspI	CCGG	1 cut(s)	645
MvnI	CGCG	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	102, 871
NlaIII	CATG	5 cut(s)	124, 214, 421, 428, 433
NlaIV	GGNNCC	5 cut(s)	216, 217, 228, 283, 297
NmuCI	GTSAC	4 cut(s)	197, 420, 465, 520
NsbI	TGCGCA	1 cut(s)	155
NspI	RCATGY	2 cut(s)	124, 421
PciI	ACATGT	2 cut(s)	120, 417
PciSI	GCTCTTC	1 cut(s)	819
PcsI	WCGNNNNNNNCGW	1 cut(s)	772
PfeI	GAWTC	1 cut(s)	794
PflFI	GACNNNGTC	1 cut(s)	771
PkrI	GCNGC	4 cut(s)	153, 595, 811, 814
PpuMI	RGGWCCY	1 cut(s)	215
PscI	ACATGT	2 cut(s)	120, 417
Psp5II	RGGWCCY	1 cut(s)	215
PspN4I	GGNNCC	5 cut(s)	216, 217, 228, 283, 297
PspPI	GGNCC	4 cut(s)	7, 172, 215, 295
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	865
PsuI	RGATCY	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	771
RsaI	GTAC	2 cut(s)	643, 713
RsaNI	GTAC	2 cut(s)	642, 712
SapI	GCTCTTC	1 cut(s)	819
SaqAI	TTAA	4 cut(s)	252, 353, 365, 846
SatI	GCNGC	4 cut(s)	152, 594, 810, 813
Sau3AI	GATC	2 cut(s)	102, 871
Sau96I	GGNCC	4 cut(s)	7, 172, 215, 295
SduI	GDGCHC	1 cut(s)	493
SfaNI	GCATC	4 cut(s)	165, 297, 577, 707
SfcI	CTRYAG	1 cut(s)	861
SinI	GGWCC	2 cut(s)	215, 295
Sse9I	AATT	4 cut(s)	255, 286, 847, 893
SsiI	CCGC	3 cut(s)	5, 109, 526
SspMI	CTAG	4 cut(s)	479, 639, 695, 741
StyI	CCWWGG	3 cut(s)	168, 210, 537
TaaI	ACNGT	5 cut(s)	203, 471, 495, 771, 913
TaqI	TCGA	3 cut(s)	144, 159, 766
TasI	AATT	4 cut(s)	255, 286, 847, 893
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	1 cut(s)	794
Tru1I	TTAA	4 cut(s)	252, 353, 365, 846
Tru9I	TTAA	4 cut(s)	252, 353, 365, 846
TscAI	CASTG	5 cut(s)	34, 208, 268, 498, 776
TseFI	GTSAC	4 cut(s)	197, 420, 465, 520
TseI	GCWGC	4 cut(s)	151, 593, 809, 812
Tsp45I	GTSAC	4 cut(s)	197, 420, 465, 520
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	5 cut(s)	34, 208, 268, 498, 776
Tth111I	GACNNNGTC	1 cut(s)	771
VneI	GTGCAC	1 cut(s)	489
VpaK11BI	GGWCC	2 cut(s)	215, 295
XapI	RAATTY	2 cut(s)	255, 893
XceI	RCATGY	2 cut(s)	124, 421
XspI	CTAG	4 cut(s)	479, 639, 695, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.